RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 PEX7O00628 323 aa16.5■□□□□ 0.23
SHMT1-204ENST00000395682 GCGP01275 180 aa16.5■□□□□ 0.23
SHMT1-204ENST00000395682 CCL18P55774 89 aa16.5■□□□□ 0.23
SHMT1-204ENST00000395682 FAM3BP58499 235 aaPredicted RBP16.5■□□□□ 0.23
SHMT1-204ENST00000395682 SMUG1Q53HV7 270 aa16.5■□□□□ 0.23
SHMT1-204ENST00000395682 TCTE3Q8IZS6 198 aa16.5■□□□□ 0.23
SHMT1-204ENST00000395682 SFT2D1Q8WV19 159 aa16.5■□□□□ 0.23
SHMT1-204ENST00000395682 MBD3L1Q8WWY6 194 aa16.5■□□□□ 0.23
SHMT1-204ENST00000395682 KCNS1Q96KK3 526 aa16.5■□□□□ 0.23
SHMT1-204ENST00000395682 SDF2L1Q9HCN8 221 aa16.5■□□□□ 0.23
SHMT1-204ENST00000395682 IGHV3-16A0A0C4DH30 117 aa16.49■□□□□ 0.23
SHMT1-204ENST00000395682 H3BNG1 76 aa16.49■□□□□ 0.23
SHMT1-204ENST00000395682 IGHV3-53P01767 116 aa16.49■□□□□ 0.23
SHMT1-204ENST00000395682 PPT1P50897 306 aa16.49■□□□□ 0.23
SHMT1-204ENST00000395682 ZFP69Q49AA0 526 aa16.49■□□□□ 0.23
SHMT1-204ENST00000395682 HIST1H2BAQ96A08 127 aa16.49■□□□□ 0.23
SHMT1-204ENST00000395682 TYMSP04818 313 aa16.48■□□□□ 0.23
SHMT1-204ENST00000395682 TPT1P13693 172 aaKnown RBP16.48■□□□□ 0.23
SHMT1-204ENST00000395682 LGALSLQ3ZCW2 172 aaPredicted RBP16.48■□□□□ 0.23
SHMT1-204ENST00000395682 CST9LP1Q5W188 147 aa16.48■□□□□ 0.23
SHMT1-204ENST00000395682 RASL10AQ92737 203 aa16.48■□□□□ 0.23
SHMT1-204ENST00000395682 VSIG2Q96IQ7 327 aa16.48■□□□□ 0.23
SHMT1-204ENST00000395682 MUC4Q99102 2169 aa16.48■□□□□ 0.23
SHMT1-204ENST00000395682 PFN1P07737 140 aaKnown RBP16.47■□□□□ 0.23
SHMT1-204ENST00000395682 DPPA3Q6W0C5 159 aa16.47■□□□□ 0.23
SHMT1-204ENST00000395682 C11orf21Q9P2W6 132 aa16.47■□□□□ 0.23
SHMT1-204ENST00000395682 LINC00588Q9Y4M8 146 aa16.47■□□□□ 0.23
SHMT1-204ENST00000395682 A0A1B0GV50 99 aa16.46■□□□□ 0.23
SHMT1-204ENST00000395682 ARL2-SNX15V9GYD0 113 aa16.46■□□□□ 0.23
SHMT1-204ENST00000395682 NACAE9PAV3 2078 aa16.46■□□□□ 0.22
SHMT1-204ENST00000395682 M0R2P5 195 aa16.45■□□□□ 0.22
SHMT1-204ENST00000395682 PAGE4O60829 102 aa16.45■□□□□ 0.22
SHMT1-204ENST00000395682 FRAS1Q86XX4 4008 aa16.45■□□□□ 0.22
SHMT1-204ENST00000395682 H2AFB1P0C5Y9 115 aa16.44■□□□□ 0.22
SHMT1-204ENST00000395682 FHL2Q14192 279 aa16.44■□□□□ 0.22
SHMT1-204ENST00000395682 HHLA3Q9XRX5 114 aa16.44■□□□□ 0.22
SHMT1-204ENST00000395682 hCG_2014768A0A024R1R8 64 aa16.43■□□□□ 0.22
SHMT1-204ENST00000395682 PAX4O43316 350 aa16.43■□□□□ 0.22
SHMT1-204ENST00000395682 C1QBP02746 253 aa16.43■□□□□ 0.22
SHMT1-204ENST00000395682 SLAQ13239 276 aa16.43■□□□□ 0.22
SHMT1-204ENST00000395682 Q6ZR54 194 aa16.43■□□□□ 0.22
SHMT1-204ENST00000395682 Q86TA4 180 aa16.43■□□□□ 0.22
SHMT1-204ENST00000395682 ZNRF2Q8NHG8 242 aa16.43■□□□□ 0.22
SHMT1-204ENST00000395682 TCEAL7Q9BRU2 100 aa16.43■□□□□ 0.22
SHMT1-204ENST00000395682 PRO0255Q9UI72 69 aa16.43■□□□□ 0.22
SHMT1-204ENST00000395682 SFTA3P0C7M3 94 aa16.42■□□□□ 0.22
SHMT1-204ENST00000395682 ESRGQ1W209 222 aa16.42■□□□□ 0.22
SHMT1-204ENST00000395682 ZNF479Q96JC4 524 aa16.42■□□□□ 0.22
SHMT1-204ENST00000395682 A0A096LPF7 62 aa16.41■□□□□ 0.22
SHMT1-204ENST00000395682 TRGV4A0A0C4DH28 118 aa16.41■□□□□ 0.22
SHMT1-204ENST00000395682 FABP5P3A8MUU1 101 aa16.41■□□□□ 0.22
SHMT1-204ENST00000395682 CRYBA4P53673 196 aa16.41■□□□□ 0.22
SHMT1-204ENST00000395682 EIF5AL1Q6IS14 154 aaKnown RBP16.41■□□□□ 0.22
SHMT1-204ENST00000395682 FMC1Q96HJ9 113 aa16.41■□□□□ 0.22
SHMT1-204ENST00000395682 ZFP30Q9Y2G7 519 aa16.41■□□□□ 0.22
SHMT1-204ENST00000395682 UBE2G1P62253 170 aa16.4■□□□□ 0.22
SHMT1-204ENST00000395682 AKAP14Q86UN6 197 aa16.4■□□□□ 0.22
SHMT1-204ENST00000395682 OR4C5Q8NGB2 326 aa16.4■□□□□ 0.22
SHMT1-204ENST00000395682 TRAV4A0A0B4J268 109 aa16.38■□□□□ 0.21
SHMT1-204ENST00000395682 C9JCJ5 164 aa16.38■□□□□ 0.21
SHMT1-204ENST00000395682 RAB5CP51148 216 aa16.38■□□□□ 0.21
SHMT1-204ENST00000395682 LINC00336Q6ZUF6 198 aa16.38■□□□□ 0.21
SHMT1-204ENST00000395682 ZC2HC1AQ96GY0 325 aa16.38■□□□□ 0.21
SHMT1-204ENST00000395682 ICOSQ9Y6W8 199 aa16.38■□□□□ 0.21
SHMT1-204ENST00000395682 DNAH2Q9P225 4427 aa16.37■□□□□ 0.21
SHMT1-204ENST00000395682 IGKV3D-20A0A0C4DH25 116 aa16.37■□□□□ 0.21
SHMT1-204ENST00000395682 TRBV6-1A0A0K0K1D8 114 aa16.37■□□□□ 0.21
SHMT1-204ENST00000395682 RTL8CO15255 209 aa16.37■□□□□ 0.21
SHMT1-204ENST00000395682 AKR1C3P42330 323 aa16.37■□□□□ 0.21
SHMT1-204ENST00000395682 CRIP1P50238 77 aa16.37■□□□□ 0.21
SHMT1-204ENST00000395682 ZNF876PQ49A33 203 aa16.37■□□□□ 0.21
SHMT1-204ENST00000395682 C9orf85Q96MD7 179 aa16.37■□□□□ 0.21
SHMT1-204ENST00000395682 Q9H8V8 135 aa16.37■□□□□ 0.21
SHMT1-204ENST00000395682 BIRC6Q9NR09 4857 aa16.36■□□□□ 0.21
SHMT1-204ENST00000395682 NBDYA0A0U1RRE5 68 aa16.36■□□□□ 0.21
SHMT1-204ENST00000395682 ORM1P02763 201 aa16.36■□□□□ 0.21
SHMT1-204ENST00000395682 CCL20P78556 96 aa16.36■□□□□ 0.21
SHMT1-204ENST00000395682 COX8CQ7Z4L0 72 aa16.36■□□□□ 0.21
SHMT1-204ENST00000395682 SLC51BQ86UW2 128 aa16.36■□□□□ 0.21
SHMT1-204ENST00000395682 LTAP01374 205 aa16.35■□□□□ 0.21
SHMT1-204ENST00000395682 RNASE3P12724 160 aaKnown RBP16.35■□□□□ 0.21
SHMT1-204ENST00000395682 MRPS16Q9Y3D3 137 aaKnown RBP16.35■□□□□ 0.21
SHMT1-204ENST00000395682 TRAV1-1A0A0B4J248 108 aa16.34■□□□□ 0.21
SHMT1-204ENST00000395682 SULT1A2P50226 295 aa16.34■□□□□ 0.21
SHMT1-204ENST00000395682 MRPL23Q16540 153 aaKnown RBP16.34■□□□□ 0.21
SHMT1-204ENST00000395682 FAM162BQ5T6X4 162 aa16.34■□□□□ 0.21
SHMT1-204ENST00000395682 C1orf134Q5TEV5 83 aa16.34■□□□□ 0.21
SHMT1-204ENST00000395682 SCO2A0A1W2PP80 73 aa16.33■□□□□ 0.2
SHMT1-204ENST00000395682 PGPEP1LA6NFU8 196 aa16.33■□□□□ 0.2
SHMT1-204ENST00000395682 B4DEV8 164 aa16.33■□□□□ 0.2
SHMT1-204ENST00000395682 SH2D1AO60880 128 aa16.33■□□□□ 0.2
SHMT1-204ENST00000395682 S100A9P06702 114 aaKnown RBP16.33■□□□□ 0.2
SHMT1-204ENST00000395682 S100A4P26447 101 aaKnown RBP16.33■□□□□ 0.2
SHMT1-204ENST00000395682 SOHLH1Q5JUK2 328 aa16.33■□□□□ 0.2
SHMT1-204ENST00000395682 UPK3BQ9BT76 320 aa16.33■□□□□ 0.2
SHMT1-204ENST00000395682 GNG13Q9P2W3 67 aa16.33■□□□□ 0.2
SHMT1-204ENST00000395682 ASIPP42127 132 aa16.32■□□□□ 0.2
SHMT1-204ENST00000395682 ZNF674Q2M3X9 581 aa16.32■□□□□ 0.2
SHMT1-204ENST00000395682 PTH2Q96A98 100 aa16.32■□□□□ 0.2
SHMT1-204ENST00000395682 DNAH17Q9UFH2 4485 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms