RNA–Protein interactions for RNA: ENST00000394272.7

HDDC3-202, Transcript of HD domain containing 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HDDC3, Length 1,880 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-202ENST00000394272 TMEM136Q6ZRR5 245 aa14.98□□□□□ -0.01
HDDC3-202ENST00000394272 C3orf56Q8N813 242 aa14.98□□□□□ -0.01
HDDC3-202ENST00000394272 TRAPPC1Q9Y5R8 145 aa14.98□□□□□ -0.01
HDDC3-202ENST00000394272 TRAV12-2A0A075B6T6 113 aa14.97□□□□□ -0.01
HDDC3-202ENST00000394272 SNURFLB1AK76 121 aa14.97□□□□□ -0.01
HDDC3-202ENST00000394272 CTRLP40313 264 aa14.97□□□□□ -0.01
HDDC3-202ENST00000394272 WDR73Q6P4I2 378 aa14.97□□□□□ -0.01
HDDC3-202ENST00000394272 FER1L6-AS1Q8NA97 138 aa14.97□□□□□ -0.01
HDDC3-202ENST00000394272 A0A1B0GUT8 65 aa14.97□□□□□ -0.01
HDDC3-202ENST00000394272 ARMS2P0C7Q2 107 aa14.97□□□□□ -0.01
HDDC3-202ENST00000394272 FABP9Q0Z7S8 132 aa14.97□□□□□ -0.01
HDDC3-202ENST00000394272 SHISA2Q6UWI4 295 aa14.97□□□□□ -0.01
HDDC3-202ENST00000394272 LYZL1Q6UWQ5 148 aa14.97□□□□□ -0.01
HDDC3-202ENST00000394272 TMEM158Q8WZ71 300 aa14.97□□□□□ -0.01
HDDC3-202ENST00000394272 FRZBQ92765 325 aa14.97□□□□□ -0.01
HDDC3-202ENST00000394272 TPPP3Q9BW30 176 aa14.97□□□□□ -0.01
HDDC3-202ENST00000394272 TRAV12-3A0A0B4J271 114 aa14.96□□□□□ -0.01
HDDC3-202ENST00000394272 HBBP68871 147 aa14.96□□□□□ -0.01
HDDC3-202ENST00000394272 ANXA2RQ3ZCQ2 193 aa14.96□□□□□ -0.01
HDDC3-202ENST00000394272 C12orf54Q6X4T0 127 aa14.96□□□□□ -0.01
HDDC3-202ENST00000394272 MCRIP2Q9BUT9 160 aaKnown RBP14.96□□□□□ -0.01
HDDC3-202ENST00000394272 NAGKQ9UJ70 344 aa14.96□□□□□ -0.01
HDDC3-202ENST00000394272 CRXO43186 299 aaPredicted RBP14.95□□□□□ -0.02
HDDC3-202ENST00000394272 MT-ND6P03923 174 aa14.95□□□□□ -0.02
HDDC3-202ENST00000394272 CAMPP49913 170 aa14.95□□□□□ -0.02
HDDC3-202ENST00000394272 MUC21Q5SSG8 566 aa14.95□□□□□ -0.02
HDDC3-202ENST00000394272 TRPT1Q86TN4 253 aaKnown RBP14.95□□□□□ -0.02
HDDC3-202ENST00000394272 CNFNQ9BYD5 112 aa14.95□□□□□ -0.02
HDDC3-202ENST00000394272 CMYA5Q8N3K9 4069 aa14.94□□□□□ -0.02
HDDC3-202ENST00000394272 HIST1H2BKO60814 126 aa14.94□□□□□ -0.02
HDDC3-202ENST00000394272 HLA-DQA1P01909 254 aa14.94□□□□□ -0.02
HDDC3-202ENST00000394272 HIST1H2BJP06899 126 aa14.94□□□□□ -0.02
HDDC3-202ENST00000394272 HIST1H2BOP23527 126 aa14.94□□□□□ -0.02
HDDC3-202ENST00000394272 HIST1H2BBP33778 126 aa14.94□□□□□ -0.02
HDDC3-202ENST00000394272 FXYD7P58549 80 aa14.94□□□□□ -0.02
HDDC3-202ENST00000394272 HIST1H2BDP58876 126 aa14.94□□□□□ -0.02
HDDC3-202ENST00000394272 HIST1H2BCP62807 126 aa14.94□□□□□ -0.02
HDDC3-202ENST00000394272 HIST2H2BEQ16778 126 aa14.94□□□□□ -0.02
HDDC3-202ENST00000394272 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.94□□□□□ -0.02
HDDC3-202ENST00000394272 STHQ8IWL8 128 aa14.94□□□□□ -0.02
HDDC3-202ENST00000394272 HIST1H2BHQ93079 126 aa14.94□□□□□ -0.02
HDDC3-202ENST00000394272 HIST1H2BNQ99877 126 aa14.94□□□□□ -0.02
HDDC3-202ENST00000394272 HIST1H2BMQ99879 126 aa14.94□□□□□ -0.02
HDDC3-202ENST00000394272 MRPL18Q9H0U6 180 aaKnown RBP14.94□□□□□ -0.02
HDDC3-202ENST00000394272 COL6A5A8TX70 2615 aa14.94□□□□□ -0.02
HDDC3-202ENST00000394272 TRGC1P0CF51 173 aa14.93□□□□□ -0.02
HDDC3-202ENST00000394272 RIGQ13278 110 aa14.93□□□□□ -0.02
HDDC3-202ENST00000394272 SSBP4Q9BWG4 385 aaPredicted RBP14.93□□□□□ -0.02
HDDC3-202ENST00000394272 F2Z2F3 143 aa14.93□□□□□ -0.02
HDDC3-202ENST00000394272 RAB4BP61018 213 aa14.93□□□□□ -0.02
HDDC3-202ENST00000394272 TDRG1Q3Y452 100 aa14.93□□□□□ -0.02
HDDC3-202ENST00000394272 BORCS7Q96B45 105 aa14.93□□□□□ -0.02
HDDC3-202ENST00000394272 WFDC10AQ9H1F0 79 aa14.93□□□□□ -0.02
HDDC3-202ENST00000394272 A0A1B0GW15 77 aa14.92□□□□□ -0.02
HDDC3-202ENST00000394272 WIPF1O43516 503 aa14.92□□□□□ -0.02
HDDC3-202ENST00000394272 SNAI2O43623 268 aa14.92□□□□□ -0.02
HDDC3-202ENST00000394272 DNLZQ5SXM8 178 aa14.92□□□□□ -0.02
HDDC3-202ENST00000394272 OR5AL1P0C617 328 aa14.91□□□□□ -0.02
HDDC3-202ENST00000394272 RBMY1A1P0DJD3 496 aaKnown RBP14.91□□□□□ -0.02
HDDC3-202ENST00000394272 RBMY1CP0DJD4 496 aa14.91□□□□□ -0.02
HDDC3-202ENST00000394272 RBMY1FQ15415 496 aaKnown RBP14.91□□□□□ -0.02
HDDC3-202ENST00000394272 FAM159AQ6UWV7 190 aa14.91□□□□□ -0.02
HDDC3-202ENST00000394272 GATD1Q8NB37 220 aa14.91□□□□□ -0.02
HDDC3-202ENST00000394272 KCNS1Q96KK3 526 aa14.91□□□□□ -0.02
HDDC3-202ENST00000394272 GNRH2O43555 120 aa14.91□□□□□ -0.02
HDDC3-202ENST00000394272 IGLL1P15814 213 aa14.91□□□□□ -0.02
HDDC3-202ENST00000394272 MUC21A0A0G2JKD1 596 aa14.9□□□□□ -0.02
HDDC3-202ENST00000394272 MUC21A0A140T8X8 626 aa14.9□□□□□ -0.02
HDDC3-202ENST00000394272 SLAQ13239 276 aa14.9□□□□□ -0.02
HDDC3-202ENST00000394272 H3BVH4 76 aa14.89□□□□□ -0.03
HDDC3-202ENST00000394272 ASIPP42127 132 aa14.89□□□□□ -0.03
HDDC3-202ENST00000394272 IGHV1OR15-1A0A075B7D0 117 aa14.89□□□□□ -0.03
HDDC3-202ENST00000394272 S100A8P05109 93 aa14.89□□□□□ -0.03
HDDC3-202ENST00000394272 MED14OSP0DP75 135 aa14.89□□□□□ -0.03
HDDC3-202ENST00000394272 NTF3P20783 257 aa14.89□□□□□ -0.03
HDDC3-202ENST00000394272 APCSP02743 223 aa14.88□□□□□ -0.03
HDDC3-202ENST00000394272 RNASE3P12724 160 aaKnown RBP14.88□□□□□ -0.03
HDDC3-202ENST00000394272 ZNF493Q6ZR52 646 aa14.88□□□□□ -0.03
HDDC3-202ENST00000394272 OR10AG1Q8NH19 301 aa14.88□□□□□ -0.03
HDDC3-202ENST00000394272 SCRT2Q9NQ03 307 aa14.88□□□□□ -0.03
HDDC3-202ENST00000394272 ANK2Q01484 3957 aa14.87□□□□□ -0.03
HDDC3-202ENST00000394272 AMBPP02760 352 aa14.87□□□□□ -0.03
HDDC3-202ENST00000394272 S100A4P26447 101 aaKnown RBP14.87□□□□□ -0.03
HDDC3-202ENST00000394272 SSTP61278 116 aa14.87□□□□□ -0.03
HDDC3-202ENST00000394272 GTSCR1Q86UQ5 136 aa14.87□□□□□ -0.03
HDDC3-202ENST00000394272 IGHV4-4A0A075B6R2 117 aa14.86□□□□□ -0.03
HDDC3-202ENST00000394272 TWIST1Q15672 202 aa14.86□□□□□ -0.03
HDDC3-202ENST00000394272 C20orf144Q9BQM9 153 aa14.86□□□□□ -0.03
HDDC3-202ENST00000394272 MSRB1Q9NZV6 116 aa14.86□□□□□ -0.03
HDDC3-202ENST00000394272 TP53TG3Q9ULZ0 132 aa14.86□□□□□ -0.03
HDDC3-202ENST00000394272 MUC4Q99102 2169 aa14.86□□□□□ -0.03
HDDC3-202ENST00000394272 NUTF2P61970 127 aaKnown RBP14.86□□□□□ -0.03
HDDC3-202ENST00000394272 PRR31Q5SQ13 230 aa14.86□□□□□ -0.03
HDDC3-202ENST00000394272 INSP01308 110 aa14.85□□□□□ -0.03
HDDC3-202ENST00000394272 KIAA1644Q3SXP7 199 aa14.85□□□□□ -0.03
HDDC3-202ENST00000394272 Q8N1Y9 231 aa14.85□□□□□ -0.03
HDDC3-202ENST00000394272 DEFB125Q8N687 156 aa14.85□□□□□ -0.03
HDDC3-202ENST00000394272 XCL2Q9UBD3 114 aa14.85□□□□□ -0.03
HDDC3-202ENST00000394272 IGHV3-16A0A0C4DH30 117 aa14.84□□□□□ -0.03
HDDC3-202ENST00000394272 S100A6P06703 90 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms