RNA–Protein interactions for RNA: ENST00000361866.7

COL6A1-201, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL6A1, Length 4,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-201ENST00000361866 CFHR4Q92496 578 aa10.9□□□□□ -0.66
COL6A1-201ENST00000361866 DUX5Q96PT3 197 aa10.9□□□□□ -0.66
COL6A1-201ENST00000361866 BPESC1Q9GZL8 116 aa10.9□□□□□ -0.66
COL6A1-201ENST00000361866 ERG28Q9UKR5 140 aa10.9□□□□□ -0.66
COL6A1-201ENST00000361866 TSPAN13O95857 204 aa10.9□□□□□ -0.66
COL6A1-201ENST00000361866 PAX1P15863 534 aa10.9□□□□□ -0.66
COL6A1-201ENST00000361866 SP5Q6BEB4 398 aaPredicted RBP10.89□□□□□ -0.67
COL6A1-201ENST00000361866 C9orf139Q6ZV77 190 aa10.89□□□□□ -0.67
COL6A1-201ENST00000361866 CEND1Q8N111 149 aa10.89□□□□□ -0.67
COL6A1-201ENST00000361866 MLST8Q9BVC4 326 aa10.89□□□□□ -0.67
COL6A1-201ENST00000361866 PRAC2D3DTV9 90 aa10.89□□□□□ -0.67
COL6A1-201ENST00000361866 F6UB75 175 aa10.89□□□□□ -0.67
COL6A1-201ENST00000361866 OVOL3O00110 214 aa10.89□□□□□ -0.67
COL6A1-201ENST00000361866 CIRBPQ14011 172 aaKnown RBP10.89□□□□□ -0.67
COL6A1-201ENST00000361866 WFDC2Q14508 124 aa10.89□□□□□ -0.67
COL6A1-201ENST00000361866 LINC01559Q495D7 138 aa10.89□□□□□ -0.67
COL6A1-201ENST00000361866 PRSS22Q9GZN4 317 aa10.89□□□□□ -0.67
COL6A1-201ENST00000361866 KAAG1Q9UBP8 84 aa10.89□□□□□ -0.67
COL6A1-201ENST00000361866 TP53TG1Q9Y2A0 90 aa10.89□□□□□ -0.67
COL6A1-201ENST00000361866 OVOL1O14753 267 aa10.89□□□□□ -0.67
COL6A1-201ENST00000361866 CHD8Q9HCK8 2581 aa10.89□□□□□ -0.67
COL6A1-201ENST00000361866 C9JAW5 83 aa10.89□□□□□ -0.67
COL6A1-201ENST00000361866 CD28P10747 220 aa10.89□□□□□ -0.67
COL6A1-201ENST00000361866 C12orf74Q32Q52 190 aa10.89□□□□□ -0.67
COL6A1-201ENST00000361866 C10orf126Q8N4M7 172 aa10.89□□□□□ -0.67
COL6A1-201ENST00000361866 DUX3Q96PT4 197 aa10.89□□□□□ -0.67
COL6A1-201ENST00000361866 CEP192Q8TEP8 1941 aa10.88□□□□□ -0.67
COL6A1-201ENST00000361866 CELSR3Q9NYQ7 3312 aa10.88□□□□□ -0.67
COL6A1-201ENST00000361866 TEX22C9J3V5 150 aa10.88□□□□□ -0.67
COL6A1-201ENST00000361866 H3BUX3 64 aa10.88□□□□□ -0.67
COL6A1-201ENST00000361866 HLA-DRB4P13762 266 aa10.88□□□□□ -0.67
COL6A1-201ENST00000361866 RUSC1-AS1Q66K80 236 aa10.88□□□□□ -0.67
COL6A1-201ENST00000361866 PIMREGQ9BSJ6 248 aa10.88□□□□□ -0.67
COL6A1-201ENST00000361866 RHPN1-AS1Q9BWJ2 59 aa10.88□□□□□ -0.67
COL6A1-201ENST00000361866 HLA-DRB4X5D2U9 266 aa10.88□□□□□ -0.67
COL6A1-201ENST00000361866 F8VRH5 84 aa10.88□□□□□ -0.67
COL6A1-201ENST00000361866 M0R1W7 72 aa10.88□□□□□ -0.67
COL6A1-201ENST00000361866 NPFFO15130 113 aa10.88□□□□□ -0.67
COL6A1-201ENST00000361866 C19orf54Q5BKX5 351 aa10.88□□□□□ -0.67
COL6A1-201ENST00000361866 LINC00477Q96M19 166 aa10.88□□□□□ -0.67
COL6A1-201ENST00000361866 ZNF48Q96MX3 618 aaPredicted RBP10.88□□□□□ -0.67
COL6A1-201ENST00000361866 TMEM95Q3KNT9 176 aa10.88□□□□□ -0.67
COL6A1-201ENST00000361866 MINOS1Q5TGZ0 78 aa10.88□□□□□ -0.67
COL6A1-201ENST00000361866 SMIM2Q9BVW6 85 aa10.88□□□□□ -0.67
COL6A1-201ENST00000361866 MINOS1-NBL1R4GNA1 71 aa10.88□□□□□ -0.67
COL6A1-201ENST00000361866 SPEGQ15772 3267 aa10.88□□□□□ -0.67
COL6A1-201ENST00000361866 ANXA2RQ3ZCQ2 193 aa10.87□□□□□ -0.67
COL6A1-201ENST00000361866 SPXQ9BT56 116 aa10.87□□□□□ -0.67
COL6A1-201ENST00000361866 TOMM7Q9P0U1 55 aa10.87□□□□□ -0.67
COL6A1-201ENST00000361866 SPTBN4Q9H254 2564 aa10.87□□□□□ -0.67
COL6A1-201ENST00000361866 Q8N976 141 aa10.87□□□□□ -0.67
COL6A1-201ENST00000361866 TMEM262E9PQX1 116 aa10.87□□□□□ -0.67
COL6A1-201ENST00000361866 DEFB1P60022 68 aa10.87□□□□□ -0.67
COL6A1-201ENST00000361866 ITLN2Q8WWU7 325 aaPredicted RBP10.87□□□□□ -0.67
COL6A1-201ENST00000361866 MYMXA0A1B0GTQ4 84 aa10.86□□□□□ -0.67
COL6A1-201ENST00000361866 K7ENP7 123 aa10.86□□□□□ -0.67
COL6A1-201ENST00000361866 RNASE1P07998 156 aaKnown RBP10.86□□□□□ -0.67
COL6A1-201ENST00000361866 IGFL3Q6UXB1 125 aa10.86□□□□□ -0.67
COL6A1-201ENST00000361866 SHISA9B4DS77 424 aa10.86□□□□□ -0.67
COL6A1-201ENST00000361866 BOD1L2Q8IYS8 172 aa10.86□□□□□ -0.67
COL6A1-201ENST00000361866 VCYO14598 125 aa10.86□□□□□ -0.67
COL6A1-201ENST00000361866 NAV2Q8IVL1 2488 aa10.86□□□□□ -0.67
COL6A1-201ENST00000361866 MOB4Q9Y3A3 225 aa10.85□□□□□ -0.67
COL6A1-201ENST00000361866 TRBV7-1A0A0A6YYK4 115 aa10.85□□□□□ -0.67
COL6A1-201ENST00000361866 KNCNA6PVL3 124 aa10.85□□□□□ -0.67
COL6A1-201ENST00000361866 IGLV1-47P01700 117 aa10.85□□□□□ -0.67
COL6A1-201ENST00000361866 CRYGCP07315 174 aa10.85□□□□□ -0.67
COL6A1-201ENST00000361866 KLHL30-AS1Q8NEE0 82 aa10.85□□□□□ -0.67
COL6A1-201ENST00000361866 HIVEP3Q5T1R4 2406 aa10.85□□□□□ -0.67
COL6A1-201ENST00000361866 CITED1Q99966 193 aa10.85□□□□□ -0.67
COL6A1-201ENST00000361866 OOSP1A8MZH6 123 aa10.85□□□□□ -0.67
COL6A1-201ENST00000361866 F8W1H4 67 aa10.85□□□□□ -0.67
COL6A1-201ENST00000361866 SIVA1O15304 175 aa10.85□□□□□ -0.67
COL6A1-201ENST00000361866 CTSGP08311 255 aa10.85□□□□□ -0.67
COL6A1-201ENST00000361866 IGFL2Q6UWQ7 119 aa10.84□□□□□ -0.67
COL6A1-201ENST00000361866 RPL39LQ96EH5 51 aaKnown RBP10.84□□□□□ -0.67
COL6A1-201ENST00000361866 LINC01587Q99440 93 aa10.84□□□□□ -0.67
COL6A1-201ENST00000361866 SS18L2Q9UHA2 77 aa10.84□□□□□ -0.67
COL6A1-201ENST00000361866 LAMA1P25391 3075 aa10.84□□□□□ -0.67
COL6A1-201ENST00000361866 WDFY4Q6ZS81 3184 aa10.84□□□□□ -0.67
COL6A1-201ENST00000361866 GNRH2O43555 120 aa10.84□□□□□ -0.67
COL6A1-201ENST00000361866 ZNF80P51504 273 aaPredicted RBP10.84□□□□□ -0.67
COL6A1-201ENST00000361866 C11orf44Q8N8P7 122 aa10.84□□□□□ -0.67
COL6A1-201ENST00000361866 TRAV12-2A0A075B6T6 113 aa10.84□□□□□ -0.67
COL6A1-201ENST00000361866 PRSS29PA6NIE9 313 aa10.84□□□□□ -0.67
COL6A1-201ENST00000361866 SCGB1A1P11684 91 aa10.84□□□□□ -0.67
COL6A1-201ENST00000361866 FAM110DQ8TAY7 271 aaPredicted RBP10.84□□□□□ -0.67
COL6A1-201ENST00000361866 OR13C6PQ8NH95 151 aa10.83□□□□□ -0.68
COL6A1-201ENST00000361866 ZNF625Q96I27 306 aaPredicted RBP10.83□□□□□ -0.68
COL6A1-201ENST00000361866 CCL19Q99731 98 aa10.83□□□□□ -0.68
COL6A1-201ENST00000361866 TRAV26-1A0A087WT03 109 aa10.83□□□□□ -0.68
COL6A1-201ENST00000361866 A0A087WX48 190 aa10.83□□□□□ -0.68
COL6A1-201ENST00000361866 SDHAF1A6NFY7 115 aa10.83□□□□□ -0.68
COL6A1-201ENST00000361866 B5MCH6 92 aa10.83□□□□□ -0.68
COL6A1-201ENST00000361866 IGLL5B9A064 214 aa10.83□□□□□ -0.68
COL6A1-201ENST00000361866 ADARB2-AS1A8MUL3 147 aa10.82□□□□□ -0.68
COL6A1-201ENST00000361866 UBE2L6O14933 153 aa10.82□□□□□ -0.68
COL6A1-201ENST00000361866 TMEM190Q8WZ59 177 aa10.82□□□□□ -0.68
COL6A1-201ENST00000361866 INS-IGF2F8WCM5 200 aa10.82□□□□□ -0.68
COL6A1-201ENST00000361866 KLK9Q9UKQ9 250 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms