RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 SIP14410 1827 aa5.07□□□□□ -1.6
UPF2-201ENST00000356352 NDUFA1O15239 70 aa5.07□□□□□ -1.6
UPF2-201ENST00000356352 MED14OSP0DP75 135 aa5.07□□□□□ -1.6
UPF2-201ENST00000356352 COX7B2Q8TF08 81 aa5.07□□□□□ -1.6
UPF2-201ENST00000356352 Q9HAA7 133 aa5.07□□□□□ -1.6
UPF2-201ENST00000356352 GNRH2O43555 120 aa5.07□□□□□ -1.6
UPF2-201ENST00000356352 C4orf48Q5BLP8 95 aa5.07□□□□□ -1.6
UPF2-201ENST00000356352 SMIM20Q8N5G0 67 aa5.07□□□□□ -1.6
UPF2-201ENST00000356352 OPRPNQ99935 248 aaPredicted RBP5.07□□□□□ -1.6
UPF2-201ENST00000356352 SLX1AQ9BQ83 275 aa5.07□□□□□ -1.6
UPF2-201ENST00000356352 THSD7BQ9C0I4 1608 aa5.07□□□□□ -1.6
UPF2-201ENST00000356352 MYCNOSP40205 109 aa5.06□□□□□ -1.6
UPF2-201ENST00000356352 UBE2AP49459 152 aa5.06□□□□□ -1.6
UPF2-201ENST00000356352 NTN5Q8WTR8 489 aaPredicted RBP5.06□□□□□ -1.6
UPF2-201ENST00000356352 VSIG2Q96IQ7 327 aa5.06□□□□□ -1.6
UPF2-201ENST00000356352 ZNF747Q9BV97 191 aa5.06□□□□□ -1.6
UPF2-201ENST00000356352 DKK2Q9UBU2 259 aa5.06□□□□□ -1.6
UPF2-201ENST00000356352 ZNF503-AS2A6NEH8 195 aa5.06□□□□□ -1.6
UPF2-201ENST00000356352 RNASE13Q5GAN3 156 aaKnown RBP5.06□□□□□ -1.6
UPF2-201ENST00000356352 DIAPH2-AS1Q14236 149 aa5.06□□□□□ -1.6
UPF2-201ENST00000356352 Q71RC1 249 aaPredicted RBP5.06□□□□□ -1.6
UPF2-201ENST00000356352 A0A0B4J2C4 111 aa5.05□□□□□ -1.6
UPF2-201ENST00000356352 K7EMT4 169 aa5.05□□□□□ -1.6
UPF2-201ENST00000356352 C16orf54Q6UWD8 224 aa5.05□□□□□ -1.6
UPF2-201ENST00000356352 Q8NFD4 153 aa5.05□□□□□ -1.6
UPF2-201ENST00000356352 A0A1B0GX51 115 aa5.05□□□□□ -1.6
UPF2-201ENST00000356352 F8W735 103 aaPredicted RBP5.05□□□□□ -1.6
UPF2-201ENST00000356352 ZFP2Q6ZN57 461 aa5.05□□□□□ -1.6
UPF2-201ENST00000356352 SND1-IT1Q9HBX3 110 aa5.05□□□□□ -1.6
UPF2-201ENST00000356352 SCN5AQ14524 2016 aa5.05□□□□□ -1.6
UPF2-201ENST00000356352 JMJD7-PLA2G4BH0Y9G9 81 aa5.05□□□□□ -1.6
UPF2-201ENST00000356352 H3BMG7 143 aa5.05□□□□□ -1.6
UPF2-201ENST00000356352 C9orf47Q6ZRZ4 202 aa5.05□□□□□ -1.6
UPF2-201ENST00000356352 RP1L1Q8IWN7 2480 aaPredicted RBP5.05□□□□□ -1.6
UPF2-201ENST00000356352 LTBP1Q14766 1721 aa5.05□□□□□ -1.6
UPF2-201ENST00000356352 K7ERJ3 54 aa5.05□□□□□ -1.6
UPF2-201ENST00000356352 C14orf177Q52M58 125 aa5.05□□□□□ -1.6
UPF2-201ENST00000356352 C4orf3Q8WVX3 66 aa5.05□□□□□ -1.6
UPF2-201ENST00000356352 IGLV11-55A0A075B6I3 123 aa5.05□□□□□ -1.6
UPF2-201ENST00000356352 K7EN84 100 aa5.05□□□□□ -1.6
UPF2-201ENST00000356352 NDUFC2O95298 119 aa5.05□□□□□ -1.6
UPF2-201ENST00000356352 HIST2H2BCQ6DN03 193 aa5.05□□□□□ -1.6
UPF2-201ENST00000356352 IGFL2Q6UWQ7 119 aa5.05□□□□□ -1.6
UPF2-201ENST00000356352 I3L2K1 104 aa5.04□□□□□ -1.6
UPF2-201ENST00000356352 ATOX1O00244 68 aa5.04□□□□□ -1.6
UPF2-201ENST00000356352 INSL3P51460 131 aa5.04□□□□□ -1.6
UPF2-201ENST00000356352 SLURP1P55000 103 aa5.04□□□□□ -1.6
UPF2-201ENST00000356352 NREPQ16612 68 aa5.04□□□□□ -1.6
UPF2-201ENST00000356352 C5orf38Q86SI9 138 aa5.04□□□□□ -1.6
UPF2-201ENST00000356352 CTSZQ9UBR2 303 aa5.04□□□□□ -1.6
UPF2-201ENST00000356352 LINC01620Q4KN68 170 aa5.04□□□□□ -1.6
UPF2-201ENST00000356352 APRG1Q8IVJ8 170 aa5.04□□□□□ -1.6
UPF2-201ENST00000356352 SEC16AO15027 2179 aa5.04□□□□□ -1.6
UPF2-201ENST00000356352 DNAJC13O75165 2243 aa5.04□□□□□ -1.6
UPF2-201ENST00000356352 IGHV7-81A0A0B4J1V7 117 aa5.04□□□□□ -1.6
UPF2-201ENST00000356352 IGLL5B9A064 214 aa5.04□□□□□ -1.6
UPF2-201ENST00000356352 WISP1O95388 367 aa5.04□□□□□ -1.6
UPF2-201ENST00000356352 IGHV3-30P01768 117 aa5.04□□□□□ -1.6
UPF2-201ENST00000356352 IGHV3-33P01772 117 aa5.04□□□□□ -1.6
UPF2-201ENST00000356352 IGHV3-30-3P0DP02 117 aa5.04□□□□□ -1.6
UPF2-201ENST00000356352 IGHV3-30-5P0DP03 117 aa5.04□□□□□ -1.6
UPF2-201ENST00000356352 PDE6GP18545 87 aa5.04□□□□□ -1.6
UPF2-201ENST00000356352 WFDC9Q8NEX5 89 aa5.04□□□□□ -1.6
UPF2-201ENST00000356352 SEC61GP60059 68 aa5.03□□□□□ -1.6
UPF2-201ENST00000356352 DAZAP2Q15038 168 aaPredicted RBP5.03□□□□□ -1.6
UPF2-201ENST00000356352 C10orf105Q8TEF2 133 aa5.03□□□□□ -1.6
UPF2-201ENST00000356352 AJUBAQ96IF1 538 aa5.03□□□□□ -1.6
UPF2-201ENST00000356352 C17orf77Q96MU5 243 aa5.03□□□□□ -1.6
UPF2-201ENST00000356352 CABIN1Q9Y6J0 2220 aa5.03□□□□□ -1.6
UPF2-201ENST00000356352 TRBV7-3A0A075B6L6 115 aa5.03□□□□□ -1.6
UPF2-201ENST00000356352 WIPF3A6NGB9 483 aa5.03□□□□□ -1.6
UPF2-201ENST00000356352 PSMB8P28062 276 aa5.03□□□□□ -1.6
UPF2-201ENST00000356352 B9D2Q9BPU9 175 aa5.03□□□□□ -1.6
UPF2-201ENST00000356352 HHLA3Q9XRX5 114 aa5.03□□□□□ -1.6
UPF2-201ENST00000356352 DOCK3Q8IZD9 2030 aa5.03□□□□□ -1.6
UPF2-201ENST00000356352 SPTBP11277 2137 aa5.03□□□□□ -1.6
UPF2-201ENST00000356352 C5orf47Q569G3 176 aa5.03□□□□□ -1.6
UPF2-201ENST00000356352 AMTNQ6UX39 209 aa5.03□□□□□ -1.6
UPF2-201ENST00000356352 DIRC1Q969H9 104 aa5.03□□□□□ -1.6
UPF2-201ENST00000356352 IGHV4-61A0A0C4DH41 118 aa5.02□□□□□ -1.61
UPF2-201ENST00000356352 WI2-2373I1.2A0A1W2PRP0 233 aa5.02□□□□□ -1.61
UPF2-201ENST00000356352 DEFB136Q30KP8 78 aa5.02□□□□□ -1.61
UPF2-201ENST00000356352 KRTAP27-1Q3LI81 207 aa5.02□□□□□ -1.61
UPF2-201ENST00000356352 C5orf56Q8N8D9 126 aa5.02□□□□□ -1.61
UPF2-201ENST00000356352 TIMM17AQ99595 171 aa5.02□□□□□ -1.61
UPF2-201ENST00000356352 ABCA7Q8IZY2 2146 aa5.02□□□□□ -1.61
UPF2-201ENST00000356352 IGLV2-23P01705 113 aa5.02□□□□□ -1.61
UPF2-201ENST00000356352 RSPO1Q2MKA7 263 aaPredicted RBP5.02□□□□□ -1.61
UPF2-201ENST00000356352 GPHB5Q86YW7 130 aa5.02□□□□□ -1.61
UPF2-201ENST00000356352 C11orf53Q8IXP5 236 aa5.02□□□□□ -1.61
UPF2-201ENST00000356352 LYPD6BQ8NI32 183 aa5.02□□□□□ -1.61
UPF2-201ENST00000356352 FANCD2OSQ96PS1 177 aa5.02□□□□□ -1.61
UPF2-201ENST00000356352 SPATA25Q9BR10 227 aa5.02□□□□□ -1.61
UPF2-201ENST00000356352 KIF26BQ2KJY2 2108 aa5.02□□□□□ -1.61
UPF2-201ENST00000356352 TRBV6-1A0A0K0K1D8 114 aa5.02□□□□□ -1.61
UPF2-201ENST00000356352 IGHV4-38-2P0DP08 117 aa5.02□□□□□ -1.61
UPF2-201ENST00000356352 TOMM6Q96B49 74 aa5.02□□□□□ -1.61
UPF2-201ENST00000356352 TET1Q8NFU7 2136 aa5.02□□□□□ -1.61
UPF2-201ENST00000356352 IGHV4-4A0A075B6R2 117 aa5.02□□□□□ -1.61
UPF2-201ENST00000356352 K7EIM0 57 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms