RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3A, Length 2,235 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 FOSL1P15407 271 aa16.74■□□□□ 0.27
UPF3A-201ENST00000351487 PSMG4Q5JS54 123 aa16.74■□□□□ 0.27
UPF3A-201ENST00000351487 CELSR1Q9NYQ6 3014 aa16.74■□□□□ 0.27
UPF3A-201ENST00000351487 TRAV26-2A0A0B4J265 109 aa16.74■□□□□ 0.27
UPF3A-201ENST00000351487 MED14OSP0DP75 135 aa16.74■□□□□ 0.27
UPF3A-201ENST00000351487 LCNL1Q6ZST4 164 aa16.74■□□□□ 0.27
UPF3A-201ENST00000351487 OR9G4Q8NGQ1 327 aa16.73■□□□□ 0.27
UPF3A-201ENST00000351487 SPG11Q96JI7 2443 aa16.73■□□□□ 0.27
UPF3A-201ENST00000351487 SIVA1O15304 175 aa16.73■□□□□ 0.27
UPF3A-201ENST00000351487 COL12A1Q99715 3063 aa16.72■□□□□ 0.27
UPF3A-201ENST00000351487 K7EMT4 169 aa16.72■□□□□ 0.27
UPF3A-201ENST00000351487 DEFB1P60022 68 aa16.72■□□□□ 0.27
UPF3A-201ENST00000351487 RPL11P62913 178 aaKnown RBP16.72■□□□□ 0.27
UPF3A-201ENST00000351487 LAGE3Q14657 143 aa16.72■□□□□ 0.27
UPF3A-201ENST00000351487 TM4SF20Q53R12 229 aa16.72■□□□□ 0.27
UPF3A-201ENST00000351487 TMEM97Q5BJF2 176 aa16.72■□□□□ 0.27
UPF3A-201ENST00000351487 SMPXQ9UHP9 88 aa16.72■□□□□ 0.27
UPF3A-201ENST00000351487 J3KRW8 73 aa16.72■□□□□ 0.27
UPF3A-201ENST00000351487 ATP5LO75964 103 aa16.72■□□□□ 0.27
UPF3A-201ENST00000351487 SEC11AP67812 179 aa16.72■□□□□ 0.27
UPF3A-201ENST00000351487 ASIPP42127 132 aa16.71■□□□□ 0.27
UPF3A-201ENST00000351487 PEF1Q9UBV8 284 aaKnown RBP16.71■□□□□ 0.27
UPF3A-201ENST00000351487 SMIM17P0DL12 118 aa16.7■□□□□ 0.26
UPF3A-201ENST00000351487 SLC25A16P16260 332 aa16.7■□□□□ 0.26
UPF3A-201ENST00000351487 VPS13CQ709C8 3753 aa16.7■□□□□ 0.26
UPF3A-201ENST00000351487 ANXA2RQ3ZCQ2 193 aa16.7■□□□□ 0.26
UPF3A-201ENST00000351487 HHLA3Q9XRX5 114 aa16.7■□□□□ 0.26
UPF3A-201ENST00000351487 F6UB75 175 aa16.69■□□□□ 0.26
UPF3A-201ENST00000351487 PRSS1P07477 247 aa16.69■□□□□ 0.26
UPF3A-201ENST00000351487 PSMB8P28062 276 aa16.69■□□□□ 0.26
UPF3A-201ENST00000351487 USP9XQ93008 2570 aaPredicted RBP16.69■□□□□ 0.26
UPF3A-201ENST00000351487 KIR3DS1Q14943 382 aa16.69■□□□□ 0.26
UPF3A-201ENST00000351487 A1L4Q6 167 aa16.68■□□□□ 0.26
UPF3A-201ENST00000351487 S100A4P26447 101 aaKnown RBP16.68■□□□□ 0.26
UPF3A-201ENST00000351487 SAMD13Q5VXD3 122 aa16.68■□□□□ 0.26
UPF3A-201ENST00000351487 SMIM2Q9BVW6 85 aa16.68■□□□□ 0.26
UPF3A-201ENST00000351487 DPH3P1Q9H4G8 78 aa16.68■□□□□ 0.26
UPF3A-201ENST00000351487 M0R381 172 aa16.68■□□□□ 0.26
UPF3A-201ENST00000351487 SRSF1Q07955 248 aaKnown RBP eCLIP16.68■□□□□ 0.263e-6■□□□□ 11.2
UPF3A-201ENST00000351487 VAMP3Q15836 100 aa16.68■□□□□ 0.26
UPF3A-201ENST00000351487 FOXC2Q99958 501 aa16.68■□□□□ 0.26
UPF3A-201ENST00000351487 IGKCP01834 107 aa16.67■□□□□ 0.26
UPF3A-201ENST00000351487 RNASE4P34096 147 aaKnown RBP16.67■□□□□ 0.26
UPF3A-201ENST00000351487 NMUP48645 174 aa16.67■□□□□ 0.26
UPF3A-201ENST00000351487 HSD52Q0P140 79 aa16.67■□□□□ 0.26
UPF3A-201ENST00000351487 TMEM95Q3KNT9 176 aa16.67■□□□□ 0.26
UPF3A-201ENST00000351487 ADAMTSL5Q6ZMM2 481 aa16.67■□□□□ 0.26
UPF3A-201ENST00000351487 PCP2Q8IVA1 136 aa16.67■□□□□ 0.26
UPF3A-201ENST00000351487 PHLDA3Q9Y5J5 127 aa16.67■□□□□ 0.26
UPF3A-201ENST00000351487 IGSF10Q6WRI0 2623 aa16.67■□□□□ 0.26
UPF3A-201ENST00000351487 IGKV3-7A0A075B6H7 116 aa16.66■□□□□ 0.26
UPF3A-201ENST00000351487 TCTAP57738 103 aa16.66■□□□□ 0.26
UPF3A-201ENST00000351487 LINC01356Q8N9X3 169 aa16.66■□□□□ 0.26
UPF3A-201ENST00000351487 DEFB112Q30KQ8 113 aa16.66■□□□□ 0.26
UPF3A-201ENST00000351487 NRGNQ92686 78 aa16.66■□□□□ 0.26
UPF3A-201ENST00000351487 FLNCQ14315 2725 aa16.66■□□□□ 0.26
UPF3A-201ENST00000351487 A0A096LNT2 108 aa16.65■□□□□ 0.26
UPF3A-201ENST00000351487 KLLNB2CW77 178 aa16.65■□□□□ 0.26
UPF3A-201ENST00000351487 DPM2O94777 84 aa16.65■□□□□ 0.26
UPF3A-201ENST00000351487 IGHV4-59P01825 116 aa16.65■□□□□ 0.26
UPF3A-201ENST00000351487 MYOZ3Q8TDC0 251 aa16.65■□□□□ 0.26
UPF3A-201ENST00000351487 DCANP1Q8TF63 244 aa16.65■□□□□ 0.26
UPF3A-201ENST00000351487 C20orf78Q9BR46 151 aa16.65■□□□□ 0.26
UPF3A-201ENST00000351487 TMEM89A2RUT3 159 aa16.65■□□□□ 0.26
UPF3A-201ENST00000351487 NXPH4O95158 308 aa16.65■□□□□ 0.26
UPF3A-201ENST00000351487 RNASE3P12724 160 aaKnown RBP16.65■□□□□ 0.26
UPF3A-201ENST00000351487 RASL10AQ92737 203 aa16.65■□□□□ 0.26
UPF3A-201ENST00000351487 CBY3A6NI87 242 aa16.64■□□□□ 0.25
UPF3A-201ENST00000351487 EDN2P20800 178 aa16.64■□□□□ 0.25
UPF3A-201ENST00000351487 ID1P41134 155 aa16.64■□□□□ 0.25
UPF3A-201ENST00000351487 SUMO2P61956 95 aaKnown RBP16.64■□□□□ 0.25
UPF3A-201ENST00000351487 CSPG4Q6UVK1 2322 aa16.64■□□□□ 0.25
UPF3A-201ENST00000351487 K7EMI3 77 aa16.64■□□□□ 0.25
UPF3A-201ENST00000351487 J3QLI3 93 aa16.63■□□□□ 0.25
UPF3A-201ENST00000351487 IGKV2D-26A0A0A0MRZ7 120 aa16.62■□□□□ 0.25
UPF3A-201ENST00000351487 C7orf71A4D174 169 aa16.62■□□□□ 0.25
UPF3A-201ENST00000351487 ERASQ7Z444 233 aa16.62■□□□□ 0.25
UPF3A-201ENST00000351487 C14orf178Q8N769 122 aaPredicted RBP16.62■□□□□ 0.25
UPF3A-201ENST00000351487 AP1S3Q96PC3 154 aa16.62■□□□□ 0.25
UPF3A-201ENST00000351487 GNRH2O43555 120 aa16.62■□□□□ 0.25
UPF3A-201ENST00000351487 HLA-DRB4P13762 266 aa16.62■□□□□ 0.25
UPF3A-201ENST00000351487 SRD5A1P18405 259 aa16.62■□□□□ 0.25
UPF3A-201ENST00000351487 ORMDL2Q53FV1 153 aa16.62■□□□□ 0.25
UPF3A-201ENST00000351487 OR4C5Q8NGB2 326 aa16.62■□□□□ 0.25
UPF3A-201ENST00000351487 HLA-DRB4X5D2U9 266 aa16.62■□□□□ 0.25
UPF3A-201ENST00000351487 A6NDN8 102 aa16.61■□□□□ 0.25
UPF3A-201ENST00000351487 SPRY2O43597 315 aa16.61■□□□□ 0.25
UPF3A-201ENST00000351487 POM121L12Q8N7R1 296 aa16.61■□□□□ 0.25
UPF3A-201ENST00000351487 A0A087WX48 190 aa16.61■□□□□ 0.25
UPF3A-201ENST00000351487 MRPL35Q9NZE8 188 aaKnown RBP16.61■□□□□ 0.25
UPF3A-201ENST00000351487 HIGD1BQ9P298 99 aa16.61■□□□□ 0.25
UPF3A-201ENST00000351487 ZC2HC1BQ5TFG8 222 aa16.6■□□□□ 0.25
UPF3A-201ENST00000351487 MUC4Q99102 2169 aa16.6■□□□□ 0.25
UPF3A-201ENST00000351487 RNF223E7ERA6 249 aa16.6■□□□□ 0.25
UPF3A-201ENST00000351487 K7EP13 123 aa16.6■□□□□ 0.25
UPF3A-201ENST00000351487 SELENOKQ9Y6D0 94 aa16.6■□□□□ 0.25
UPF3A-201ENST00000351487 RPL39LQ96EH5 51 aaKnown RBP16.59■□□□□ 0.25
UPF3A-201ENST00000351487 TRAV12-1A0A0B4J245 112 aa16.58■□□□□ 0.25
UPF3A-201ENST00000351487 TRAV8-6A0A0B4J262 113 aa16.58■□□□□ 0.25
UPF3A-201ENST00000351487 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP16.58■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms