RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 LINC00477Q96M19 166 aa11.68□□□□□ -0.54
UPF3B-202ENST00000345865 C18orf15Q96N68 181 aa11.68□□□□□ -0.54
UPF3B-202ENST00000345865 LENEPQ9Y5L5 61 aa11.68□□□□□ -0.54
UPF3B-202ENST00000345865 IGHV4-4A0A075B6R2 117 aa11.68□□□□□ -0.54
UPF3B-202ENST00000345865 NUDT3O95989 172 aa11.68□□□□□ -0.54
UPF3B-202ENST00000345865 COX8AP10176 69 aa11.68□□□□□ -0.54
UPF3B-202ENST00000345865 SRD5A1P18405 259 aa11.68□□□□□ -0.54
UPF3B-202ENST00000345865 LEPP41159 167 aa11.67□□□□□ -0.54
UPF3B-202ENST00000345865 NRACQ8N912 160 aa11.67□□□□□ -0.54
UPF3B-202ENST00000345865 OR10J6PQ8NGY7 276 aa11.67□□□□□ -0.54
UPF3B-202ENST00000345865 FAM19A4Q96LR4 140 aa11.67□□□□□ -0.54
UPF3B-202ENST00000345865 UFC1Q9Y3C8 167 aa11.67□□□□□ -0.54
UPF3B-202ENST00000345865 DOPEY2Q9Y3R5 2298 aa11.67□□□□□ -0.54
UPF3B-202ENST00000345865 ZNF469Q96JG9 3925 aaPredicted RBP11.67□□□□□ -0.54
UPF3B-202ENST00000345865 A0A0G2JLM5 398 aa11.66□□□□□ -0.54
UPF3B-202ENST00000345865 OVOL1O14753 267 aa11.66□□□□□ -0.54
UPF3B-202ENST00000345865 TCTAP57738 103 aa11.66□□□□□ -0.54
UPF3B-202ENST00000345865 SPANXN1Q5VSR9 72 aa11.66□□□□□ -0.54
UPF3B-202ENST00000345865 C2orf91Q6ZV80 131 aa11.66□□□□□ -0.54
UPF3B-202ENST00000345865 OR2K2Q8NGT1 345 aa11.66□□□□□ -0.54
UPF3B-202ENST00000345865 DKK2Q9UBU2 259 aa11.66□□□□□ -0.54
UPF3B-202ENST00000345865 FGF6P10767 208 aa11.66□□□□□ -0.54
UPF3B-202ENST00000345865 BVES-AS1Q5T3Y7 98 aa11.66□□□□□ -0.54
UPF3B-202ENST00000345865 NXT2Q9NPJ8 142 aaKnown RBP11.66□□□□□ -0.54
UPF3B-202ENST00000345865 DAZ1Q9NQZ3 744 aaKnown RBP11.66□□□□□ -0.54
UPF3B-202ENST00000345865 PSMB8P28062 276 aa11.65□□□□□ -0.54
UPF3B-202ENST00000345865 FCER1GP30273 86 aa11.65□□□□□ -0.54
UPF3B-202ENST00000345865 BBC3Q96PG8 261 aaPredicted RBP11.65□□□□□ -0.54
UPF3B-202ENST00000345865 GATA3P23771 443 aa11.65□□□□□ -0.54
UPF3B-202ENST00000345865 DSCR9P59020 149 aa11.65□□□□□ -0.54
UPF3B-202ENST00000345865 PEF1Q9UBV8 284 aaKnown RBP11.65□□□□□ -0.54
UPF3B-202ENST00000345865 SMPXQ9UHP9 88 aa11.65□□□□□ -0.54
UPF3B-202ENST00000345865 COX11Q9Y6N1 276 aa11.65□□□□□ -0.54
UPF3B-202ENST00000345865 UBR5O95071 2799 aaPredicted RBP11.65□□□□□ -0.55
UPF3B-202ENST00000345865 Q8N8P6 123 aa11.64□□□□□ -0.55
UPF3B-202ENST00000345865 LINC01356Q8N9X3 169 aa11.64□□□□□ -0.55
UPF3B-202ENST00000345865 TMEM158Q8WZ71 300 aa11.64□□□□□ -0.55
UPF3B-202ENST00000345865 PTPN13Q12923 2485 aa11.64□□□□□ -0.55
UPF3B-202ENST00000345865 TRAV21A0A0B4J279 112 aa11.64□□□□□ -0.55
UPF3B-202ENST00000345865 SLC25A16P16260 332 aa11.64□□□□□ -0.55
UPF3B-202ENST00000345865 SRSF1Q07955 248 aaKnown RBP eCLIP11.64□□□□□ -0.55
UPF3B-202ENST00000345865 ANXA2RQ3ZCQ2 193 aa11.64□□□□□ -0.55
UPF3B-202ENST00000345865 RNASE4P34096 147 aaKnown RBP11.63□□□□□ -0.55
UPF3B-202ENST00000345865 ORAOV1Q8WV07 137 aa11.63□□□□□ -0.55
UPF3B-202ENST00000345865 DPF1Q92782 380 aa11.63□□□□□ -0.55
UPF3B-202ENST00000345865 SMIM15Q7Z3B0 74 aa11.63□□□□□ -0.55
UPF3B-202ENST00000345865 APRG1Q8IVJ8 170 aa11.63□□□□□ -0.55
UPF3B-202ENST00000345865 PRSS47A8MTI9 375 aa11.62□□□□□ -0.55
UPF3B-202ENST00000345865 M0R381 172 aa11.62□□□□□ -0.55
UPF3B-202ENST00000345865 GNRH2O43555 120 aa11.62□□□□□ -0.55
UPF3B-202ENST00000345865 CD5LO43866 347 aa11.62□□□□□ -0.55
UPF3B-202ENST00000345865 TGFAP01135 160 aa11.62□□□□□ -0.55
UPF3B-202ENST00000345865 MUC4Q99102 2169 aa11.62□□□□□ -0.55
UPF3B-202ENST00000345865 DEFB125Q8N687 156 aa11.61□□□□□ -0.55
UPF3B-202ENST00000345865 DCANP1Q8TF63 244 aa11.61□□□□□ -0.55
UPF3B-202ENST00000345865 ZNF580Q9UK33 172 aa11.61□□□□□ -0.55
UPF3B-202ENST00000345865 ABCA12Q86UK0 2595 aa11.61□□□□□ -0.55
UPF3B-202ENST00000345865 NBPF19A0A087WUL8 3843 aa11.61□□□□□ -0.55
UPF3B-202ENST00000345865 ODF1Q14990 250 aa11.61□□□□□ -0.55
UPF3B-202ENST00000345865 TEX15Q9BXT5 2789 aa11.61□□□□□ -0.55
UPF3B-202ENST00000345865 A1L4Q6 167 aa11.6□□□□□ -0.55
UPF3B-202ENST00000345865 K7EMT4 169 aa11.6□□□□□ -0.55
UPF3B-202ENST00000345865 TAX1BP3O14907 124 aa11.6□□□□□ -0.55
UPF3B-202ENST00000345865 RNASE3P12724 160 aaKnown RBP11.6□□□□□ -0.55
UPF3B-202ENST00000345865 ERASQ7Z444 233 aa11.6□□□□□ -0.55
UPF3B-202ENST00000345865 OR1N2Q8NGR9 330 aa11.6□□□□□ -0.55
UPF3B-202ENST00000345865 WFDC12Q8WWY7 111 aa11.6□□□□□ -0.55
UPF3B-202ENST00000345865 CCL25O15444 150 aa11.6□□□□□ -0.55
UPF3B-202ENST00000345865 C12orf54Q6X4T0 127 aa11.6□□□□□ -0.55
UPF3B-202ENST00000345865 BOD1L2Q8IYS8 172 aa11.6□□□□□ -0.55
UPF3B-202ENST00000345865 ZMAT4Q9H898 229 aa11.6□□□□□ -0.55
UPF3B-202ENST00000345865 SMIM17P0DL12 118 aa11.59□□□□□ -0.55
UPF3B-202ENST00000345865 S100A4P26447 101 aaKnown RBP11.59□□□□□ -0.55
UPF3B-202ENST00000345865 KRTAP10-9P60411 292 aa11.59□□□□□ -0.55
UPF3B-202ENST00000345865 PCP2Q8IVA1 136 aa11.59□□□□□ -0.55
UPF3B-202ENST00000345865 HHLA3Q9XRX5 114 aa11.59□□□□□ -0.55
UPF3B-202ENST00000345865 CR1P17927 2039 aa11.59□□□□□ -0.55
UPF3B-202ENST00000345865 RNF223E7ERA6 249 aa11.59□□□□□ -0.55
UPF3B-202ENST00000345865 ASIPP42127 132 aa11.59□□□□□ -0.55
UPF3B-202ENST00000345865 C14orf178Q8N769 122 aaPredicted RBP11.59□□□□□ -0.55
UPF3B-202ENST00000345865 PRSS1P07477 247 aa11.58□□□□□ -0.56
UPF3B-202ENST00000345865 LAGE3Q14657 143 aa11.58□□□□□ -0.56
UPF3B-202ENST00000345865 RASL10AQ92737 203 aa11.58□□□□□ -0.56
UPF3B-202ENST00000345865 PHLDA3Q9Y5J5 127 aa11.58□□□□□ -0.56
UPF3B-202ENST00000345865 SORL1Q92673 2214 aa11.58□□□□□ -0.56
UPF3B-202ENST00000345865 KLLNB2CW77 178 aa11.58□□□□□ -0.56
UPF3B-202ENST00000345865 MRAP2Q96G30 205 aa11.58□□□□□ -0.56
UPF3B-202ENST00000345865 AGRNO00468 2067 aa11.57□□□□□ -0.56
UPF3B-202ENST00000345865 IGKV2D-26A0A0A0MRZ7 120 aa11.57□□□□□ -0.56
UPF3B-202ENST00000345865 TRBV7-9A0A0J9YWB2 115 aa11.57□□□□□ -0.56
UPF3B-202ENST00000345865 COX6B1P14854 86 aa11.57□□□□□ -0.56
UPF3B-202ENST00000345865 RPL39LQ96EH5 51 aaKnown RBP11.57□□□□□ -0.56
UPF3B-202ENST00000345865 FOXC2Q99958 501 aa11.57□□□□□ -0.56
UPF3B-202ENST00000345865 AKAP9Q99996 3911 aa11.57□□□□□ -0.56
UPF3B-202ENST00000345865 NMUP48645 174 aa11.57□□□□□ -0.56
UPF3B-202ENST00000345865 J3QLI3 93 aa11.56□□□□□ -0.56
UPF3B-202ENST00000345865 SMIM2Q9BVW6 85 aa11.56□□□□□ -0.56
UPF3B-202ENST00000345865 DPH3P1Q9H4G8 78 aa11.56□□□□□ -0.56
UPF3B-202ENST00000345865 NAV2Q8IVL1 2488 aa11.56□□□□□ -0.56
UPF3B-202ENST00000345865 FSHBP01225 129 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms