RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 ZNF726P1Q15940 193 aa9.97□□□□□ -0.81
SDC3-201ENST00000336798 VOPP1Q96AW1 172 aa9.97□□□□□ -0.81
SDC3-201ENST00000336798 SPTBN1Q01082 2364 aaKnown RBP9.97□□□□□ -0.81
SDC3-201ENST00000336798 TRAV13-2A0A0B4J235 113 aa9.97□□□□□ -0.81
SDC3-201ENST00000336798 TIRAPP58753 221 aa9.97□□□□□ -0.81
SDC3-201ENST00000336798 Q8TCH9 128 aa9.97□□□□□ -0.81
SDC3-201ENST00000336798 EGR2P11161 476 aaPredicted RBP9.97□□□□□ -0.81
SDC3-201ENST00000336798 ANKRD29Q8N6D5 301 aa9.97□□□□□ -0.81
SDC3-201ENST00000336798 SPANXDQ9BXN6 97 aa9.97□□□□□ -0.81
SDC3-201ENST00000336798 J3QLI3 93 aa9.96□□□□□ -0.81
SDC3-201ENST00000336798 F8W735 103 aaPredicted RBP9.96□□□□□ -0.81
SDC3-201ENST00000336798 J3QQQ9 107 aa9.96□□□□□ -0.81
SDC3-201ENST00000336798 SRSF2Q01130 221 aaKnown RBP9.96□□□□□ -0.81
SDC3-201ENST00000336798 DYNAPQ8N1N2 210 aa9.96□□□□□ -0.81
SDC3-201ENST00000336798 RNF183Q96D59 192 aa9.96□□□□□ -0.81
SDC3-201ENST00000336798 ZNF503Q96F45 646 aa9.96□□□□□ -0.81
SDC3-201ENST00000336798 PRO1854Q9UHT4 67 aa9.96□□□□□ -0.81
SDC3-201ENST00000336798 RHOHQ15669 191 aa9.96□□□□□ -0.82
SDC3-201ENST00000336798 V9GYY9 64 aa9.96□□□□□ -0.82
SDC3-201ENST00000336798 DOCK9Q9BZ29 2069 aa9.96□□□□□ -0.82
SDC3-201ENST00000336798 PTPRDP23468 1912 aa9.96□□□□□ -0.82
SDC3-201ENST00000336798 Q9H8V8 135 aa9.96□□□□□ -0.82
SDC3-201ENST00000336798 ANK1P16157 1881 aa9.96□□□□□ -0.82
SDC3-201ENST00000336798 ETDCA0A1B0GVM5 59 aa9.96□□□□□ -0.82
SDC3-201ENST00000336798 FOXL2NBQ6ZUU3 175 aa9.96□□□□□ -0.82
SDC3-201ENST00000336798 GYPEP15421 78 aa9.95□□□□□ -0.82
SDC3-201ENST00000336798 SPTBN2O15020 2390 aa9.95□□□□□ -0.82
SDC3-201ENST00000336798 TRAV4A0A0B4J268 109 aa9.95□□□□□ -0.82
SDC3-201ENST00000336798 Q6ZS49 121 aa9.95□□□□□ -0.82
SDC3-201ENST00000336798 OR11H6Q8NGC7 330 aa9.95□□□□□ -0.82
SDC3-201ENST00000336798 PKIGQ9Y2B9 76 aa9.95□□□□□ -0.82
SDC3-201ENST00000336798 V9GYV3 84 aa9.95□□□□□ -0.82
SDC3-201ENST00000336798 CACNA1BQ00975 2339 aa9.95□□□□□ -0.82
SDC3-201ENST00000336798 IGHV4-38-2P0DP08 117 aa9.94□□□□□ -0.82
SDC3-201ENST00000336798 NPBQ8NG41 125 aa9.94□□□□□ -0.82
SDC3-201ENST00000336798 CAMK2N2Q96S95 79 aa9.94□□□□□ -0.82
SDC3-201ENST00000336798 GATA1P15976 413 aaPredicted RBP9.94□□□□□ -0.82
SDC3-201ENST00000336798 C16orf54Q6UWD8 224 aa9.94□□□□□ -0.82
SDC3-201ENST00000336798 LYL1P12980 280 aa9.94□□□□□ -0.82
SDC3-201ENST00000336798 GP9P14770 177 aa9.94□□□□□ -0.82
SDC3-201ENST00000336798 VPREB3Q9UKI3 123 aa9.94□□□□□ -0.82
SDC3-201ENST00000336798 NCR3O14931 201 aa9.94□□□□□ -0.82
SDC3-201ENST00000336798 SVIPQ8NHG7 77 aa9.94□□□□□ -0.82
SDC3-201ENST00000336798 PROK2Q9HC23 129 aa9.94□□□□□ -0.82
SDC3-201ENST00000336798 SMIM27A0A1W2PRY6 76 aa9.93□□□□□ -0.82
SDC3-201ENST00000336798 K7EM74 188 aa9.93□□□□□ -0.82
SDC3-201ENST00000336798 LYPD6BQ8NI32 183 aa9.93□□□□□ -0.82
SDC3-201ENST00000336798 FXYD5Q96DB9 178 aa9.93□□□□□ -0.82
SDC3-201ENST00000336798 SPRNQ5BIV9 151 aa9.93□□□□□ -0.82
SDC3-201ENST00000336798 WFDC9Q8NEX5 89 aa9.93□□□□□ -0.82
SDC3-201ENST00000336798 SIPA1L1O43166 1804 aa9.93□□□□□ -0.82
SDC3-201ENST00000336798 GVINP1Q7Z2Y8 2422 aa9.93□□□□□ -0.82
SDC3-201ENST00000336798 FOXI2Q6ZQN5 318 aa9.93□□□□□ -0.82
SDC3-201ENST00000336798 LMO1P25800 156 aa9.92□□□□□ -0.82
SDC3-201ENST00000336798 DEFB125Q8N687 156 aa9.92□□□□□ -0.82
SDC3-201ENST00000336798 FAM215AQ9Y5M1 114 aa9.92□□□□□ -0.82
SDC3-201ENST00000336798 ELANEP08246 267 aa9.92□□□□□ -0.82
SDC3-201ENST00000336798 WIPF2Q8TF74 440 aaPredicted RBP9.92□□□□□ -0.82
SDC3-201ENST00000336798 NTN5Q8WTR8 489 aaPredicted RBP9.92□□□□□ -0.82
SDC3-201ENST00000336798 A0A0U1RQV1 116 aa9.92□□□□□ -0.82
SDC3-201ENST00000336798 DOCK11Q5JSL3 2073 aa9.92□□□□□ -0.82
SDC3-201ENST00000336798 C15orf65H3BRN8 121 aa9.92□□□□□ -0.82
SDC3-201ENST00000336798 K7EMI3 77 aa9.92□□□□□ -0.82
SDC3-201ENST00000336798 IGLC1P0CG04 106 aa9.92□□□□□ -0.82
SDC3-201ENST00000336798 WFDC11Q8NEX6 87 aa9.92□□□□□ -0.82
SDC3-201ENST00000336798 RPL39LQ96EH5 51 aaKnown RBP9.92□□□□□ -0.82
SDC3-201ENST00000336798 FHL1Q13642 323 aa9.92□□□□□ -0.82
SDC3-201ENST00000336798 LY6G6EA0A0G2JKS1 128 aa9.91□□□□□ -0.82
SDC3-201ENST00000336798 IGHG2P01859 326 aa9.91□□□□□ -0.82
SDC3-201ENST00000336798 BAALC-AS2P0C853 105 aa9.91□□□□□ -0.82
SDC3-201ENST00000336798 U3KQA8 63 aa9.91□□□□□ -0.82
SDC3-201ENST00000336798 COX7B2Q8TF08 81 aa9.91□□□□□ -0.82
SDC3-201ENST00000336798 IGHV4-30-2A0A087WSY4 118 aa9.91□□□□□ -0.82
SDC3-201ENST00000336798 F8VRH5 84 aa9.91□□□□□ -0.82
SDC3-201ENST00000336798 CCL18P55774 89 aa9.91□□□□□ -0.82
SDC3-201ENST00000336798 PRSS33Q8NF86 280 aa9.91□□□□□ -0.82
SDC3-201ENST00000336798 BAALCQ8WXS3 180 aa9.91□□□□□ -0.82
SDC3-201ENST00000336798 C9orf66Q5T8R8 295 aa9.9□□□□□ -0.82
SDC3-201ENST00000336798 ORMDL1Q9P0S3 153 aa9.9□□□□□ -0.82
SDC3-201ENST00000336798 UBE2AP49459 152 aa9.9□□□□□ -0.82
SDC3-201ENST00000336798 TMEM14CQ9P0S9 112 aa9.9□□□□□ -0.82
SDC3-201ENST00000336798 TICRRQ7Z2Z1 1910 aa9.9□□□□□ -0.82
SDC3-201ENST00000336798 ABCA1O95477 2261 aa9.9□□□□□ -0.82
SDC3-201ENST00000336798 DEFB113Q30KQ7 82 aa9.9□□□□□ -0.82
SDC3-201ENST00000336798 LGALS9BQ3B8N2 356 aa9.9□□□□□ -0.82
SDC3-201ENST00000336798 LGALS9CQ6DKI2 356 aa9.9□□□□□ -0.82
SDC3-201ENST00000336798 ICOSQ9Y6W8 199 aa9.9□□□□□ -0.82
SDC3-201ENST00000336798 ZNF491Q8N8L2 437 aa9.9□□□□□ -0.82
SDC3-201ENST00000336798 DAND5Q8N907 189 aa9.9□□□□□ -0.82
SDC3-201ENST00000336798 ZNF524Q96C55 264 aa9.9□□□□□ -0.82
SDC3-201ENST00000336798 USF3Q68DE3 2245 aa9.9□□□□□ -0.83
SDC3-201ENST00000336798 IGHV4-61A0A0C4DH41 118 aa9.9□□□□□ -0.83
SDC3-201ENST00000336798 SLC25A29Q8N8R3 303 aa9.9□□□□□ -0.83
SDC3-201ENST00000336798 BLCAPP62952 87 aa9.89□□□□□ -0.83
SDC3-201ENST00000336798 RITA1Q96K30 269 aa9.89□□□□□ -0.83
SDC3-201ENST00000336798 C12orf74Q32Q52 190 aa9.89□□□□□ -0.83
SDC3-201ENST00000336798 TDRG1Q3Y452 100 aa9.89□□□□□ -0.83
SDC3-201ENST00000336798 AGPAT4-IT1Q9H0P7 198 aa9.89□□□□□ -0.83
SDC3-201ENST00000336798 CTSZQ9UBR2 303 aa9.89□□□□□ -0.83
SDC3-201ENST00000336798 TRPM7Q96QT4 1865 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms