RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 Q6ZTI0 123 aa9.89□□□□□ -0.83
LIMS1-201ENST00000332345 C9orf62Q8N4C0 152 aa9.89□□□□□ -0.83
LIMS1-201ENST00000332345 NAGKQ9UJ70 344 aa9.89□□□□□ -0.83
LIMS1-201ENST00000332345 ALMS1Q8TCU4 4167 aa9.89□□□□□ -0.83
LIMS1-201ENST00000332345 TRAV1-1A0A0B4J248 108 aa9.88□□□□□ -0.83
LIMS1-201ENST00000332345 SPINK4O60575 86 aa9.88□□□□□ -0.83
LIMS1-201ENST00000332345 GCGP01275 180 aa9.88□□□□□ -0.83
LIMS1-201ENST00000332345 P0DMU3 169 aa9.88□□□□□ -0.83
LIMS1-201ENST00000332345 FAM231AP0DMU4 169 aa9.88□□□□□ -0.83
LIMS1-201ENST00000332345 FAM231CP0DMU5 169 aa9.88□□□□□ -0.83
LIMS1-201ENST00000332345 TMEM183BQ1AE95 376 aa9.88□□□□□ -0.83
LIMS1-201ENST00000332345 TMEM183AQ8IXX5 376 aa9.88□□□□□ -0.83
LIMS1-201ENST00000332345 C15orf53Q8NAA6 179 aa9.88□□□□□ -0.83
LIMS1-201ENST00000332345 FMC1Q96HJ9 113 aa9.88□□□□□ -0.83
LIMS1-201ENST00000332345 C8orf49Q96NF6 230 aa9.88□□□□□ -0.83
LIMS1-201ENST00000332345 SPXQ9BT56 116 aa9.88□□□□□ -0.83
LIMS1-201ENST00000332345 SDF2L1Q9HCN8 221 aa9.88□□□□□ -0.83
LIMS1-201ENST00000332345 MDFICQ9P1T7 246 aa9.88□□□□□ -0.83
LIMS1-201ENST00000332345 ZFP30Q9Y2G7 519 aa9.88□□□□□ -0.83
LIMS1-201ENST00000332345 PFN1P07737 140 aaKnown RBP9.87□□□□□ -0.83
LIMS1-201ENST00000332345 UBE2G1P62253 170 aa9.87□□□□□ -0.83
LIMS1-201ENST00000332345 OR5I1Q13606 314 aa9.87□□□□□ -0.83
LIMS1-201ENST00000332345 C18orf15Q96N68 181 aa9.87□□□□□ -0.83
LIMS1-201ENST00000332345 DNAH1Q9P2D7 4330 aa9.87□□□□□ -0.83
LIMS1-201ENST00000332345 FABP5P3A8MUU1 101 aa9.86□□□□□ -0.83
LIMS1-201ENST00000332345 GNRH2O43555 120 aa9.86□□□□□ -0.83
LIMS1-201ENST00000332345 S100A9P06702 114 aaKnown RBP9.86□□□□□ -0.83
LIMS1-201ENST00000332345 ZNF80P51504 273 aaPredicted RBP9.86□□□□□ -0.83
LIMS1-201ENST00000332345 MANBALQ9NQG1 85 aa9.86□□□□□ -0.83
LIMS1-201ENST00000332345 HYDINQ4G0P3 5121 aa9.86□□□□□ -0.83
LIMS1-201ENST00000332345 RYR2Q92736 4967 aa9.86□□□□□ -0.83
LIMS1-201ENST00000332345 TRBV6-1A0A0K0K1D8 114 aa9.85□□□□□ -0.83
LIMS1-201ENST00000332345 CCL20P78556 96 aa9.85□□□□□ -0.83
LIMS1-201ENST00000332345 GNG13Q9P2W3 67 aa9.85□□□□□ -0.83
LIMS1-201ENST00000332345 KMT2AQ03164 3969 aa9.85□□□□□ -0.83
LIMS1-201ENST00000332345 IGHV3-16A0A0C4DH30 117 aa9.84□□□□□ -0.83
LIMS1-201ENST00000332345 AKR1C3P42330 323 aa9.84□□□□□ -0.83
LIMS1-201ENST00000332345 Q86TA4 180 aa9.84□□□□□ -0.83
LIMS1-201ENST00000332345 RASL10AQ92737 203 aa9.84□□□□□ -0.83
LIMS1-201ENST00000332345 TXNDC17Q9BRA2 123 aa9.84□□□□□ -0.83
LIMS1-201ENST00000332345 MRPL16Q9NX20 251 aaKnown RBP9.84□□□□□ -0.83
LIMS1-201ENST00000332345 MUC4Q99102 2169 aa9.84□□□□□ -0.83
LIMS1-201ENST00000332345 M0R2P5 195 aa9.83□□□□□ -0.84
LIMS1-201ENST00000332345 NUDT3O95989 172 aa9.83□□□□□ -0.84
LIMS1-201ENST00000332345 TYMSP04818 313 aa9.83□□□□□ -0.84
LIMS1-201ENST00000332345 SLAQ13239 276 aa9.83□□□□□ -0.84
LIMS1-201ENST00000332345 RNF212Q495C1 297 aa9.83□□□□□ -0.84
LIMS1-201ENST00000332345 COX8CQ7Z4L0 72 aa9.83□□□□□ -0.84
LIMS1-201ENST00000332345 POM121L12Q8N7R1 296 aa9.83□□□□□ -0.84
LIMS1-201ENST00000332345 TRAV26-1A0A087WT03 109 aa9.82□□□□□ -0.84
LIMS1-201ENST00000332345 H3BNG1 76 aa9.82□□□□□ -0.84
LIMS1-201ENST00000332345 LTAP01374 205 aa9.82□□□□□ -0.84
LIMS1-201ENST00000332345 IFNA1P01562 189 aa9.82□□□□□ -0.84
LIMS1-201ENST00000332345 HOXA5P20719 270 aa9.82□□□□□ -0.84
LIMS1-201ENST00000332345 FAM162BQ5T6X4 162 aa9.82□□□□□ -0.84
LIMS1-201ENST00000332345 UBE2DNLQ8IWF7 75 aa9.82□□□□□ -0.84
LIMS1-201ENST00000332345 C11orf21Q9P2W6 132 aa9.82□□□□□ -0.84
LIMS1-201ENST00000332345 NACAE9PAV3 2078 aa9.82□□□□□ -0.84
LIMS1-201ENST00000332345 A0A0J9YY99 117 aa9.81□□□□□ -0.84
LIMS1-201ENST00000332345 SCO2A0A1W2PP80 73 aa9.81□□□□□ -0.84
LIMS1-201ENST00000332345 ORM1P02763 201 aa9.81□□□□□ -0.84
LIMS1-201ENST00000332345 NKX2-5P52952 324 aaPredicted RBP9.81□□□□□ -0.84
LIMS1-201ENST00000332345 BLOC1S1P78537 153 aa9.81□□□□□ -0.84
LIMS1-201ENST00000332345 ZC2HC1AQ96GY0 325 aa9.81□□□□□ -0.84
LIMS1-201ENST00000332345 IGHV3-53P01767 116 aa9.8□□□□□ -0.84
LIMS1-201ENST00000332345 S100A4P26447 101 aaKnown RBP9.8□□□□□ -0.84
LIMS1-201ENST00000332345 TAGLN2P37802 199 aaKnown RBP9.8□□□□□ -0.84
LIMS1-201ENST00000332345 SMCPP49901 116 aaPredicted RBP9.8□□□□□ -0.84
LIMS1-201ENST00000332345 CRIP1P50238 77 aa9.8□□□□□ -0.84
LIMS1-201ENST00000332345 ALKAL2Q6UX46 152 aa9.8□□□□□ -0.84
LIMS1-201ENST00000332345 BAGE2Q86Y30 109 aa9.8□□□□□ -0.84
LIMS1-201ENST00000332345 VPS13DQ5THJ4 4388 aa9.79□□□□□ -0.84
LIMS1-201ENST00000332345 IGKV3D-20A0A0C4DH25 116 aa9.79□□□□□ -0.84
LIMS1-201ENST00000332345 TRGV4A0A0C4DH28 118 aa9.79□□□□□ -0.84
LIMS1-201ENST00000332345 B4DEV8 164 aa9.79□□□□□ -0.84
LIMS1-201ENST00000332345 PDE6DO43924 150 aa9.79□□□□□ -0.84
LIMS1-201ENST00000332345 CCL18P55774 89 aa9.79□□□□□ -0.84
LIMS1-201ENST00000332345 FAM3BP58499 235 aaPredicted RBP9.79□□□□□ -0.84
LIMS1-201ENST00000332345 ZNF674Q2M3X9 581 aa9.79□□□□□ -0.84
LIMS1-201ENST00000332345 ZNF876PQ49A33 203 aa9.79□□□□□ -0.84
LIMS1-201ENST00000332345 OR4C5Q8NGB2 326 aa9.79□□□□□ -0.84
LIMS1-201ENST00000332345 PRO0255Q9UI72 69 aa9.79□□□□□ -0.84
LIMS1-201ENST00000332345 VAX2Q9UIW0 290 aa9.79□□□□□ -0.84
LIMS1-201ENST00000332345 HHLA3Q9XRX5 114 aa9.79□□□□□ -0.84
LIMS1-201ENST00000332345 TRAV4A0A0B4J268 109 aa9.78□□□□□ -0.84
LIMS1-201ENST00000332345 PAX4O43316 350 aa9.78□□□□□ -0.84
LIMS1-201ENST00000332345 SH2D1AO60880 128 aa9.78□□□□□ -0.84
LIMS1-201ENST00000332345 ASIPP42127 132 aa9.78□□□□□ -0.84
LIMS1-201ENST00000332345 RPL35P42766 123 aaKnown RBP9.78□□□□□ -0.84
LIMS1-201ENST00000332345 MEF2BQ02080 365 aaPredicted RBP9.78□□□□□ -0.84
LIMS1-201ENST00000332345 FHL2Q14192 279 aa9.78□□□□□ -0.84
LIMS1-201ENST00000332345 C11orf52Q96A22 123 aa9.78□□□□□ -0.84
LIMS1-201ENST00000332345 PTH2Q96A98 100 aa9.78□□□□□ -0.84
LIMS1-201ENST00000332345 KRBOX1C9JBD0 128 aa9.77□□□□□ -0.85
LIMS1-201ENST00000332345 C9JCJ5 164 aa9.77□□□□□ -0.85
LIMS1-201ENST00000332345 CIDEAO60543 219 aa9.77□□□□□ -0.85
LIMS1-201ENST00000332345 BCL2P10415 239 aa9.77□□□□□ -0.85
LIMS1-201ENST00000332345 RNASE3P12724 160 aaKnown RBP9.77□□□□□ -0.85
LIMS1-201ENST00000332345 NHLRC2Q8NBF2 726 aa9.77□□□□□ -0.85
LIMS1-201ENST00000332345 VSIG2Q96IQ7 327 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms