RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 LYPD1Q8N2G4 141 aa9.27□□□□□ -0.93
USHBP1-201ENST00000252597 TTC9CQ8N5M4 171 aa9.27□□□□□ -0.93
USHBP1-201ENST00000252597 OR11H12B2RN74 326 aa9.27□□□□□ -0.93
USHBP1-201ENST00000252597 ATP6V0E1O15342 81 aa9.27□□□□□ -0.93
USHBP1-201ENST00000252597 OR11H1Q8NG94 326 aa9.27□□□□□ -0.93
USHBP1-201ENST00000252597 OR11H2Q8NH07 326 aa9.27□□□□□ -0.93
USHBP1-201ENST00000252597 ZANQ9Y493 2812 aa9.27□□□□□ -0.93
USHBP1-201ENST00000252597 NAV2Q8IVL1 2488 aa9.26□□□□□ -0.93
USHBP1-201ENST00000252597 IGHV3-64A0A075B6Q5 118 aa9.26□□□□□ -0.93
USHBP1-201ENST00000252597 RPS20P60866 119 aaKnown RBP9.26□□□□□ -0.93
USHBP1-201ENST00000252597 ZNF562Q6V9R5 426 aa9.26□□□□□ -0.93
USHBP1-201ENST00000252597 C11orf21Q9P2W6 132 aa9.26□□□□□ -0.93
USHBP1-201ENST00000252597 IGLV11-55A0A075B6I3 123 aa9.26□□□□□ -0.93
USHBP1-201ENST00000252597 AZU1P20160 251 aa9.26□□□□□ -0.93
USHBP1-201ENST00000252597 Q8NA96 180 aa9.26□□□□□ -0.93
USHBP1-201ENST00000252597 NXT2Q9NPJ8 142 aaKnown RBP9.26□□□□□ -0.93
USHBP1-201ENST00000252597 MRPL16Q9NX20 251 aaKnown RBP9.26□□□□□ -0.93
USHBP1-201ENST00000252597 PHLDA3Q9Y5J5 127 aa9.26□□□□□ -0.93
USHBP1-201ENST00000252597 HRNRQ86YZ3 2850 aaPredicted RBP9.26□□□□□ -0.93
USHBP1-201ENST00000252597 CDSNQ15517 529 aa9.26□□□□□ -0.93
USHBP1-201ENST00000252597 WI2-2373I1.2A0A1W2PRP0 233 aa9.25□□□□□ -0.93
USHBP1-201ENST00000252597 G3V4G9 280 aa9.25□□□□□ -0.93
USHBP1-201ENST00000252597 ATP5G2Q06055 141 aa9.25□□□□□ -0.93
USHBP1-201ENST00000252597 RPL39LQ96EH5 51 aaKnown RBP9.25□□□□□ -0.93
USHBP1-201ENST00000252597 RNF185Q96GF1 192 aa9.25□□□□□ -0.93
USHBP1-201ENST00000252597 IGKV3D-20A0A0C4DH25 116 aa9.25□□□□□ -0.93
USHBP1-201ENST00000252597 RNASE4P34096 147 aaKnown RBP9.25□□□□□ -0.93
USHBP1-201ENST00000252597 LAGE3Q14657 143 aa9.25□□□□□ -0.93
USHBP1-201ENST00000252597 BRD3OSQ6XYD6 125 aa9.25□□□□□ -0.93
USHBP1-201ENST00000252597 KLHL30-AS1Q8NEE0 82 aa9.25□□□□□ -0.93
USHBP1-201ENST00000252597 VPS13CQ709C8 3753 aa9.25□□□□□ -0.93
USHBP1-201ENST00000252597 TNFRSF13BO14836 293 aaPredicted RBP9.25□□□□□ -0.93
USHBP1-201ENST00000252597 MRPS12O15235 138 aaKnown RBP9.25□□□□□ -0.93
USHBP1-201ENST00000252597 SCGB1C2P0DMR2 95 aa9.25□□□□□ -0.93
USHBP1-201ENST00000252597 ZNF493Q6ZR52 646 aa9.25□□□□□ -0.93
USHBP1-201ENST00000252597 METTL26Q96S19 204 aa9.25□□□□□ -0.93
USHBP1-201ENST00000252597 ZNF462Q96JM2 2506 aa9.24□□□□□ -0.93
USHBP1-201ENST00000252597 PSMB2P49721 201 aa9.24□□□□□ -0.93
USHBP1-201ENST00000252597 INSL3P51460 131 aa9.24□□□□□ -0.93
USHBP1-201ENST00000252597 PDE6HQ13956 83 aa9.24□□□□□ -0.93
USHBP1-201ENST00000252597 OR5A1Q8NGJ0 315 aa9.24□□□□□ -0.93
USHBP1-201ENST00000252597 LY6DQ14210 128 aa9.24□□□□□ -0.93
USHBP1-201ENST00000252597 CELSR2Q9HCU4 2923 aa9.24□□□□□ -0.93
USHBP1-201ENST00000252597 ACANP16112 2415 aa9.23□□□□□ -0.93
USHBP1-201ENST00000252597 F8W735 103 aaPredicted RBP9.23□□□□□ -0.93
USHBP1-201ENST00000252597 UFSP1Q6NVU6 142 aa9.23□□□□□ -0.93
USHBP1-201ENST00000252597 C8orf31Q8N9H6 132 aa9.23□□□□□ -0.93
USHBP1-201ENST00000252597 ITPR1Q14643 2758 aa9.23□□□□□ -0.93
USHBP1-201ENST00000252597 IGHV7-81A0A0B4J1V7 117 aa9.23□□□□□ -0.93
USHBP1-201ENST00000252597 OVOL3O00110 214 aa9.23□□□□□ -0.93
USHBP1-201ENST00000252597 CCDC144NLQ6NUI1 221 aa9.23□□□□□ -0.93
USHBP1-201ENST00000252597 CEND1Q8N111 149 aa9.23□□□□□ -0.93
USHBP1-201ENST00000252597 PGPEP1Q9NXJ5 209 aa9.23□□□□□ -0.93
USHBP1-201ENST00000252597 ZFHX3Q15911 3703 aa9.23□□□□□ -0.93
USHBP1-201ENST00000252597 ZNF815PA8K554 130 aa9.23□□□□□ -0.93
USHBP1-201ENST00000252597 J3QR89 54 aa9.23□□□□□ -0.93
USHBP1-201ENST00000252597 ATP5LO75964 103 aa9.23□□□□□ -0.93
USHBP1-201ENST00000252597 HLA-DRB4P13762 266 aa9.23□□□□□ -0.93
USHBP1-201ENST00000252597 ZFP36P26651 326 aaKnown RBP9.23□□□□□ -0.93
USHBP1-201ENST00000252597 HLA-DRB4X5D2U9 266 aa9.23□□□□□ -0.93
USHBP1-201ENST00000252597 CFAP46Q8IYW2 2715 aa9.23□□□□□ -0.93
USHBP1-201ENST00000252597 A0A087WWL8 130 aa9.22□□□□□ -0.93
USHBP1-201ENST00000252597 TMEM170BQ5T4T1 132 aa9.22□□□□□ -0.93
USHBP1-201ENST00000252597 C8orf86Q6ZUL3 223 aa9.22□□□□□ -0.93
USHBP1-201ENST00000252597 HHLA3Q9XRX5 114 aa9.22□□□□□ -0.93
USHBP1-201ENST00000252597 ZNF256Q9Y2P7 627 aaPredicted RBP9.22□□□□□ -0.93
USHBP1-201ENST00000252597 CHTOPQ9Y3Y2 248 aaKnown RBP9.22□□□□□ -0.93
USHBP1-201ENST00000252597 K7ENP7 123 aa9.22□□□□□ -0.93
USHBP1-201ENST00000252597 HOXB4P17483 251 aaPredicted RBP9.22□□□□□ -0.93
USHBP1-201ENST00000252597 C12orf74Q32Q52 190 aa9.22□□□□□ -0.93
USHBP1-201ENST00000252597 PTH2Q96A98 100 aa9.22□□□□□ -0.93
USHBP1-201ENST00000252597 SIGMAR1Q99720 223 aa9.22□□□□□ -0.93
USHBP1-201ENST00000252597 BEX4Q9NWD9 120 aaPredicted RBP9.22□□□□□ -0.93
USHBP1-201ENST00000252597 GNRH2O43555 120 aa9.21□□□□□ -0.93
USHBP1-201ENST00000252597 IGLC6P0CF74 106 aa9.21□□□□□ -0.93
USHBP1-201ENST00000252597 SRSF1Q07955 248 aaKnown RBP eCLIP9.21□□□□□ -0.93
USHBP1-201ENST00000252597 GAGE13Q4V321 117 aa9.21□□□□□ -0.93
USHBP1-201ENST00000252597 IGLL5B9A064 214 aa9.21□□□□□ -0.93
USHBP1-201ENST00000252597 IGHG4P01861 327 aa9.21□□□□□ -0.93
USHBP1-201ENST00000252597 PF4V1P10720 104 aa9.21□□□□□ -0.93
USHBP1-201ENST00000252597 PRTN3P24158 256 aa9.21□□□□□ -0.93
USHBP1-201ENST00000252597 SAA4P35542 130 aa9.21□□□□□ -0.93
USHBP1-201ENST00000252597 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.21□□□□□ -0.93
USHBP1-201ENST00000252597 LINC01549A6NIU2 74 aa9.21□□□□□ -0.94
USHBP1-201ENST00000252597 SLC25A16P16260 332 aa9.21□□□□□ -0.94
USHBP1-201ENST00000252597 Q8N8P6 123 aa9.21□□□□□ -0.94
USHBP1-201ENST00000252597 DPF1Q92782 380 aa9.21□□□□□ -0.94
USHBP1-201ENST00000252597 BUB3O43684 328 aa9.2□□□□□ -0.94
USHBP1-201ENST00000252597 LY6LH3BQJ8 138 aa9.2□□□□□ -0.94
USHBP1-201ENST00000252597 LINC00477Q96M19 166 aa9.2□□□□□ -0.94
USHBP1-201ENST00000252597 JPT2Q9H910 190 aa9.2□□□□□ -0.94
USHBP1-201ENST00000252597 TRBV12-3P01733 135 aa9.2□□□□□ -0.94
USHBP1-201ENST00000252597 GAGE12HA6NDE8 117 aa9.19□□□□□ -0.94
USHBP1-201ENST00000252597 CLUHP3Q96NS8 147 aa9.19□□□□□ -0.94
USHBP1-201ENST00000252597 Q1RN00 199 aa9.19□□□□□ -0.94
USHBP1-201ENST00000252597 PRR9Q5T870 116 aa9.19□□□□□ -0.94
USHBP1-201ENST00000252597 RNF5Q99942 180 aa9.19□□□□□ -0.94
USHBP1-201ENST00000252597 PRADC1Q9BSG0 188 aa9.19□□□□□ -0.94
USHBP1-201ENST00000252597 U3KQK5 164 aa9.19□□□□□ -0.94
USHBP1-201ENST00000252597 HOXA3O43365 443 aaPredicted RBP9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms