RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 UBTD1Q9HAC8 227 aa11.51□□□□□ -0.57
CLN3-253ENST00000636977 A0A0G2JLM5 398 aa11.5□□□□□ -0.57
CLN3-253ENST00000636977 SAA4P35542 130 aa11.5□□□□□ -0.57
CLN3-253ENST00000636977 CLEC19AQ6UXS0 136 aa11.5□□□□□ -0.57
CLN3-253ENST00000636977 C1orf122Q6ZSJ8 110 aa11.5□□□□□ -0.57
CLN3-253ENST00000636977 DTX2Q86UW9 622 aa11.5□□□□□ -0.57
CLN3-253ENST00000636977 ORMDL3Q8N138 153 aa11.5□□□□□ -0.57
CLN3-253ENST00000636977 ZNF502Q8TBZ5 544 aa11.5□□□□□ -0.57
CLN3-253ENST00000636977 SS18L2Q9UHA2 77 aa11.5□□□□□ -0.57
CLN3-253ENST00000636977 MINOS1Q5TGZ0 78 aa11.5□□□□□ -0.57
CLN3-253ENST00000636977 CCDC140Q96MF4 163 aa11.5□□□□□ -0.57
CLN3-253ENST00000636977 GEMIN7Q9H840 131 aaKnown RBP11.5□□□□□ -0.57
CLN3-253ENST00000636977 ZFAND3Q9H8U3 227 aa11.5□□□□□ -0.57
CLN3-253ENST00000636977 MINOS1-NBL1R4GNA1 71 aa11.5□□□□□ -0.57
CLN3-253ENST00000636977 IGHV3OR16-10A0A075B7F0 116 aa11.49□□□□□ -0.57
CLN3-253ENST00000636977 GAGE12HA6NDE8 117 aa11.49□□□□□ -0.57
CLN3-253ENST00000636977 TMEM97Q5BJF2 176 aa11.49□□□□□ -0.57
CLN3-253ENST00000636977 IL17RELQ6ZVW7 336 aa11.49□□□□□ -0.57
CLN3-253ENST00000636977 CLPSL1A2RUU4 121 aa11.49□□□□□ -0.57
CLN3-253ENST00000636977 IGLC6P0CF74 106 aa11.49□□□□□ -0.57
CLN3-253ENST00000636977 CKS2P33552 79 aa11.49□□□□□ -0.57
CLN3-253ENST00000636977 LINC00527Q9UJ94 153 aa11.49□□□□□ -0.57
CLN3-253ENST00000636977 ITPR1Q14643 2758 aa11.49□□□□□ -0.57
CLN3-253ENST00000636977 BUB3O43684 328 aa11.49□□□□□ -0.57
CLN3-253ENST00000636977 LY6DQ14210 128 aa11.49□□□□□ -0.57
CLN3-253ENST00000636977 SHISA2Q6UWI4 295 aa11.49□□□□□ -0.57
CLN3-253ENST00000636977 C2orf91Q6ZV80 131 aa11.49□□□□□ -0.57
CLN3-253ENST00000636977 COX8CQ7Z4L0 72 aa11.49□□□□□ -0.57
CLN3-253ENST00000636977 C9orf118A6NHY6 69 aa11.48□□□□□ -0.57
CLN3-253ENST00000636977 GATA1P15976 413 aaPredicted RBP11.48□□□□□ -0.57
CLN3-253ENST00000636977 PAX8Q06710 450 aa11.48□□□□□ -0.57
CLN3-253ENST00000636977 BPESC1Q9GZL8 116 aa11.48□□□□□ -0.57
CLN3-253ENST00000636977 OOSP1A8MZH6 123 aa11.48□□□□□ -0.57
CLN3-253ENST00000636977 CACNG7P62955 275 aa11.48□□□□□ -0.57
CLN3-253ENST00000636977 KIR3DS1Q14943 382 aa11.48□□□□□ -0.57
CLN3-253ENST00000636977 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.48□□□□□ -0.57
CLN3-253ENST00000636977 TMEM219Q86XT9 240 aa11.48□□□□□ -0.57
CLN3-253ENST00000636977 FAM110DQ8TAY7 271 aaPredicted RBP11.48□□□□□ -0.57
CLN3-253ENST00000636977 RNF185Q96GF1 192 aa11.48□□□□□ -0.57
CLN3-253ENST00000636977 C11orf21Q9P2W6 132 aa11.48□□□□□ -0.57
CLN3-253ENST00000636977 EVI2AP22794 236 aa11.47□□□□□ -0.57
CLN3-253ENST00000636977 TMEM95Q3KNT9 176 aa11.47□□□□□ -0.57
CLN3-253ENST00000636977 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.47□□□□□ -0.57
CLN3-253ENST00000636977 MTURNQ8N3F0 131 aa11.47□□□□□ -0.57
CLN3-253ENST00000636977 MS4A6AQ9H2W1 248 aa11.46□□□□□ -0.57
CLN3-253ENST00000636977 COX8AP10176 69 aa11.46□□□□□ -0.57
CLN3-253ENST00000636977 UBE2E1P51965 193 aa11.46□□□□□ -0.57
CLN3-253ENST00000636977 TMEM190Q8WZ59 177 aa11.46□□□□□ -0.57
CLN3-253ENST00000636977 C18orf15Q96N68 181 aa11.46□□□□□ -0.57
CLN3-253ENST00000636977 GATA3P23771 443 aa11.46□□□□□ -0.58
CLN3-253ENST00000636977 LMO4P61968 165 aa11.46□□□□□ -0.58
CLN3-253ENST00000636977 SCGB1A1P11684 91 aa11.45□□□□□ -0.58
CLN3-253ENST00000636977 ATP5G2Q06055 141 aa11.45□□□□□ -0.58
CLN3-253ENST00000636977 AGPAT4-IT1Q9H0P7 198 aa11.45□□□□□ -0.58
CLN3-253ENST00000636977 ABCA2Q9BZC7 2435 aa11.45□□□□□ -0.58
CLN3-253ENST00000636977 TRAV8-2A0A0B4J237 113 aa11.45□□□□□ -0.58
CLN3-253ENST00000636977 IGKV3D-20A0A0C4DH25 116 aa11.45□□□□□ -0.58
CLN3-253ENST00000636977 FABP5P3A8MUU1 101 aa11.45□□□□□ -0.58
CLN3-253ENST00000636977 FGF6P10767 208 aa11.45□□□□□ -0.58
CLN3-253ENST00000636977 A6NDN8 102 aa11.44□□□□□ -0.58
CLN3-253ENST00000636977 C19orf84I3L1E1 186 aa11.44□□□□□ -0.58
CLN3-253ENST00000636977 CD300EQ496F6 205 aaPredicted RBP11.44□□□□□ -0.58
CLN3-253ENST00000636977 ADAMTSL5Q6ZMM2 481 aa11.44□□□□□ -0.58
CLN3-253ENST00000636977 CENPVL3A0A0U1RRI6 287 aa11.44□□□□□ -0.58
CLN3-253ENST00000636977 HBDP02042 147 aa11.44□□□□□ -0.58
CLN3-253ENST00000636977 DKK2Q9UBU2 259 aa11.44□□□□□ -0.58
CLN3-253ENST00000636977 TRGV3P03979 118 aa11.43□□□□□ -0.58
CLN3-253ENST00000636977 SEC11AP67812 179 aa11.43□□□□□ -0.58
CLN3-253ENST00000636977 SCGB2A1O75556 95 aa11.43□□□□□ -0.58
CLN3-253ENST00000636977 FABP2P12104 132 aa11.43□□□□□ -0.58
CLN3-253ENST00000636977 IFI27L1Q96BM0 104 aa11.43□□□□□ -0.58
CLN3-253ENST00000636977 A0A1W2PPM0 123 aa11.42□□□□□ -0.58
CLN3-253ENST00000636977 SPRY2O43597 315 aa11.42□□□□□ -0.58
CLN3-253ENST00000636977 EFNA4P52798 201 aa11.42□□□□□ -0.58
CLN3-253ENST00000636977 SH2D6Q7Z4S9 175 aa11.42□□□□□ -0.58
CLN3-253ENST00000636977 H3BRM9 83 aa11.42□□□□□ -0.58
CLN3-253ENST00000636977 NPFFO15130 113 aa11.42□□□□□ -0.58
CLN3-253ENST00000636977 IGF1P05019 195 aa11.42□□□□□ -0.58
CLN3-253ENST00000636977 UCNP55089 124 aa11.42□□□□□ -0.58
CLN3-253ENST00000636977 DEFB1P60022 68 aa11.42□□□□□ -0.58
CLN3-253ENST00000636977 BRD3OSQ6XYD6 125 aa11.41□□□□□ -0.58
CLN3-253ENST00000636977 PCP2Q8IVA1 136 aa11.41□□□□□ -0.58
CLN3-253ENST00000636977 CELSR2Q9HCU4 2923 aa11.41□□□□□ -0.58
CLN3-253ENST00000636977 TRAV26-2A0A0B4J265 109 aa11.41□□□□□ -0.58
CLN3-253ENST00000636977 J3KRW8 73 aa11.41□□□□□ -0.58
CLN3-253ENST00000636977 TNFRSF6BO95407 300 aa11.41□□□□□ -0.58
CLN3-253ENST00000636977 SMIM17P0DL12 118 aa11.41□□□□□ -0.58
CLN3-253ENST00000636977 LGALS9BQ3B8N2 356 aa11.41□□□□□ -0.58
CLN3-253ENST00000636977 LINC01559Q495D7 138 aa11.41□□□□□ -0.58
CLN3-253ENST00000636977 LGALS9CQ6DKI2 356 aa11.41□□□□□ -0.58
CLN3-253ENST00000636977 C8orf86Q6ZUL3 223 aa11.41□□□□□ -0.58
CLN3-253ENST00000636977 C5orf56Q8N8D9 126 aa11.41□□□□□ -0.58
CLN3-253ENST00000636977 LEPP41159 167 aa11.4□□□□□ -0.58
CLN3-253ENST00000636977 CNFNQ9BYD5 112 aa11.4□□□□□ -0.58
CLN3-253ENST00000636977 TRBV12-3P01733 135 aa11.4□□□□□ -0.58
CLN3-253ENST00000636977 OR5A1Q8NGJ0 315 aa11.4□□□□□ -0.58
CLN3-253ENST00000636977 MRAP2Q96G30 205 aa11.4□□□□□ -0.58
CLN3-253ENST00000636977 COL25A1Q9BXS0 654 aaPredicted RBP11.4□□□□□ -0.58
CLN3-253ENST00000636977 SPG11Q96JI7 2443 aa11.4□□□□□ -0.58
CLN3-253ENST00000636977 K7EMI3 77 aa11.4□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms