RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 PHBP35232 272 aa-0.55□□□□□ -2.5
SCN1A-208ENST00000625916 SCGB2B2Q4G0G5 96 aa-0.55□□□□□ -2.5
SCN1A-208ENST00000625916 CSAG1Q6PB30 78 aa-0.55□□□□□ -2.5
SCN1A-208ENST00000625916 IDO2Q6ZQW0 420 aa-0.55□□□□□ -2.5
SCN1A-208ENST00000625916 PKD1L1Q8TDX9 2849 aa-0.56□□□□□ -2.5
SCN1A-208ENST00000625916 LRRK2Q5S007 2527 aa-0.56□□□□□ -2.5
SCN1A-208ENST00000625916 DMXL2Q8TDJ6 3036 aa-0.56□□□□□ -2.5
SCN1A-208ENST00000625916 RIIAD1A6NNX1 92 aa-0.56□□□□□ -2.5
SCN1A-208ENST00000625916 BBIP1A8MTZ0 92 aa-0.56□□□□□ -2.5
SCN1A-208ENST00000625916 HIGD1CA8MV81 97 aa-0.56□□□□□ -2.5
SCN1A-208ENST00000625916 CST7O76096 145 aa-0.56□□□□□ -2.5
SCN1A-208ENST00000625916 SERPINA1P01009 418 aa-0.56□□□□□ -2.5
SCN1A-208ENST00000625916 APOA2P02652 100 aa-0.56□□□□□ -2.5
SCN1A-208ENST00000625916 CYBAP13498 195 aa-0.56□□□□□ -2.5
SCN1A-208ENST00000625916 FABP4P15090 132 aa-0.56□□□□□ -2.5
SCN1A-208ENST00000625916 OGNP20774 298 aaKnown RBP-0.56□□□□□ -2.5
SCN1A-208ENST00000625916 RPL35P42766 123 aaKnown RBP-0.56□□□□□ -2.5
SCN1A-208ENST00000625916 HBBP68871 147 aa-0.56□□□□□ -2.5
SCN1A-208ENST00000625916 CCL7P80098 99 aa-0.56□□□□□ -2.5
SCN1A-208ENST00000625916 ITGB3BPQ13352 177 aaPredicted RBP-0.56□□□□□ -2.5
SCN1A-208ENST00000625916 C3orf62Q6ZUJ4 267 aa-0.56□□□□□ -2.5
SCN1A-208ENST00000625916 DEFB132Q7Z7B7 95 aa-0.56□□□□□ -2.5
SCN1A-208ENST00000625916 OR5AK2Q8NH90 309 aa-0.56□□□□□ -2.5
SCN1A-208ENST00000625916 GPX7Q96SL4 187 aaPredicted RBP-0.56□□□□□ -2.5
SCN1A-208ENST00000625916 PRR15LQ9BU68 103 aa-0.56□□□□□ -2.5
SCN1A-208ENST00000625916 C9orf16Q9BUW7 83 aa-0.56□□□□□ -2.5
SCN1A-208ENST00000625916 TMEM14BQ9NUH8 114 aa-0.56□□□□□ -2.5
SCN1A-208ENST00000625916 SLC22A13Q9Y226 551 aa-0.56□□□□□ -2.5
SCN1A-208ENST00000625916 UBR2Q8IWV8 1755 aa-0.56□□□□□ -2.5
SCN1A-208ENST00000625916 DOCK4Q8N1I0 1966 aa-0.56□□□□□ -2.5
SCN1A-208ENST00000625916 UHRF1BP1Q6BDS2 1440 aa-0.56□□□□□ -2.5
SCN1A-208ENST00000625916 TLN1Q9Y490 2541 aaKnown RBP-0.57□□□□□ -2.5
SCN1A-208ENST00000625916 A0A096LNT2 108 aa-0.57□□□□□ -2.5
SCN1A-208ENST00000625916 A0A1W2PPB8 328 aa-0.57□□□□□ -2.5
SCN1A-208ENST00000625916 KIR3DP1A8MWS1 328 aa-0.57□□□□□ -2.5
SCN1A-208ENST00000625916 G3V2T6 193 aa-0.57□□□□□ -2.5
SCN1A-208ENST00000625916 C1QBP02746 253 aa-0.57□□□□□ -2.5
SCN1A-208ENST00000625916 MRPS36P82909 103 aaKnown RBP-0.57□□□□□ -2.5
SCN1A-208ENST00000625916 KLKP1Q107X0 134 aa-0.57□□□□□ -2.5
SCN1A-208ENST00000625916 FKBP1CQ5VVH2 108 aa-0.57□□□□□ -2.5
SCN1A-208ENST00000625916 IZUMO2Q6UXV1 221 aa-0.57□□□□□ -2.5
SCN1A-208ENST00000625916 NEK7Q8TDX7 302 aa-0.57□□□□□ -2.5
SCN1A-208ENST00000625916 BIN3Q9NQY0 253 aa-0.57□□□□□ -2.5
SCN1A-208ENST00000625916 CHD7Q9P2D1 2997 aa-0.57□□□□□ -2.5
SCN1A-208ENST00000625916 CAMSAP2Q08AD1 1489 aa-0.57□□□□□ -2.5
SCN1A-208ENST00000625916 PLB1Q6P1J6 1458 aa-0.57□□□□□ -2.5
SCN1A-208ENST00000625916 HECTD4Q9Y4D8 3996 aa-0.57□□□□□ -2.5
SCN1A-208ENST00000625916 TRANK1O15050 2925 aa-0.57□□□□□ -2.5
SCN1A-208ENST00000625916 KIAA1107Q9UPP5 1409 aa-0.57□□□□□ -2.5
SCN1A-208ENST00000625916 N4BP2Q86UW6 1770 aaPredicted RBP-0.57□□□□□ -2.5
SCN1A-208ENST00000625916 UNC13BO14795 1591 aa-0.57□□□□□ -2.5
SCN1A-208ENST00000625916 ATG2AQ2TAZ0 1938 aa-0.58□□□□□ -2.5
SCN1A-208ENST00000625916 NUP210LQ5VU65 1888 aa-0.58□□□□□ -2.5
SCN1A-208ENST00000625916 TRPM7Q96QT4 1865 aa-0.58□□□□□ -2.5
SCN1A-208ENST00000625916 KALRNO60229 2985 aa-0.58□□□□□ -2.5
SCN1A-208ENST00000625916 MYCBP2O75592 4640 aa-0.58□□□□□ -2.5
SCN1A-208ENST00000625916 ARL5CA6NH57 179 aa-0.58□□□□□ -2.5
SCN1A-208ENST00000625916 C5orf58C9J3I9 102 aa-0.58□□□□□ -2.5
SCN1A-208ENST00000625916 NIPSNAP2O75323 286 aa-0.58□□□□□ -2.5
SCN1A-208ENST00000625916 TRACP01848 142 aa-0.58□□□□□ -2.5
SCN1A-208ENST00000625916 CST2P09228 141 aa-0.58□□□□□ -2.5
SCN1A-208ENST00000625916 CDKN2CP42773 168 aa-0.58□□□□□ -2.5
SCN1A-208ENST00000625916 GNG5P63218 68 aa-0.58□□□□□ -2.5
SCN1A-208ENST00000625916 Q5XG85 94 aa-0.58□□□□□ -2.5
SCN1A-208ENST00000625916 PHF5AQ7RTV0 110 aaKnown RBP-0.58□□□□□ -2.5
SCN1A-208ENST00000625916 TCTEX1D1Q8N7M0 179 aa-0.58□□□□□ -2.5
SCN1A-208ENST00000625916 PRAP1Q96NZ9 151 aa-0.58□□□□□ -2.5
SCN1A-208ENST00000625916 MCEEQ96PE7 176 aa-0.58□□□□□ -2.5
SCN1A-208ENST00000625916 CIB3Q96Q77 187 aaPredicted RBP-0.58□□□□□ -2.5
SCN1A-208ENST00000625916 PAIP2Q9BPZ3 127 aaKnown RBP-0.58□□□□□ -2.5
SCN1A-208ENST00000625916 OR2H1Q9GZK4 316 aa-0.58□□□□□ -2.5
SCN1A-208ENST00000625916 MRPL36Q9P0J6 103 aaKnown RBP-0.58□□□□□ -2.5
SCN1A-208ENST00000625916 ARL2BPQ9Y2Y0 163 aa-0.58□□□□□ -2.5
SCN1A-208ENST00000625916 CD109Q6YHK3 1445 aa-0.58□□□□□ -2.5
SCN1A-208ENST00000625916 ABCA1O95477 2261 aa-0.58□□□□□ -2.5
SCN1A-208ENST00000625916 NBPF19A0A087WUL8 3843 aa-0.58□□□□□ -2.5
SCN1A-208ENST00000625916 RTL9Q8NET4 1388 aa-0.58□□□□□ -2.5
SCN1A-208ENST00000625916 TANC1Q9C0D5 1861 aa-0.58□□□□□ -2.5
SCN1A-208ENST00000625916 PIK3C2AO00443 1686 aa-0.59□□□□□ -2.5
SCN1A-208ENST00000625916 CUBNO60494 3623 aa-0.59□□□□□ -2.5
SCN1A-208ENST00000625916 ESPL1Q14674 2120 aa-0.59□□□□□ -2.5
SCN1A-208ENST00000625916 NINQ8N4C6 2090 aa-0.59□□□□□ -2.5
SCN1A-208ENST00000625916 MCRIP1C9JLW8 97 aa-0.59□□□□□ -2.5
SCN1A-208ENST00000625916 H7C1C5 153 aa-0.59□□□□□ -2.5
SCN1A-208ENST00000625916 IGF2P01344 180 aa-0.59□□□□□ -2.5
SCN1A-208ENST00000625916 MPC1LP0DKB6 136 aa-0.59□□□□□ -2.5
SCN1A-208ENST00000625916 LCN6P62502 163 aa-0.59□□□□□ -2.5
SCN1A-208ENST00000625916 POU6F1Q14863 301 aa-0.59□□□□□ -2.5
SCN1A-208ENST00000625916 SNCBQ16143 134 aa-0.59□□□□□ -2.5
SCN1A-208ENST00000625916 RGS21Q2M5E4 152 aa-0.59□□□□□ -2.5
SCN1A-208ENST00000625916 C1orf140Q5VVS0 124 aa-0.59□□□□□ -2.5
SCN1A-208ENST00000625916 CROCCP2Q86T23 111 aa-0.59□□□□□ -2.5
SCN1A-208ENST00000625916 OR4B1Q8NGF8 309 aa-0.59□□□□□ -2.5
SCN1A-208ENST00000625916 DSCR8Q96T75 97 aa-0.59□□□□□ -2.5
SCN1A-208ENST00000625916 LINC00846Q9NV44 126 aa-0.59□□□□□ -2.5
SCN1A-208ENST00000625916 PRNDQ9UKY0 176 aa-0.59□□□□□ -2.5
SCN1A-208ENST00000625916 PYCARDQ9ULZ3 195 aa-0.59□□□□□ -2.5
SCN1A-208ENST00000625916 SSR3Q9UNL2 185 aa-0.59□□□□□ -2.5
SCN1A-208ENST00000625916 FAM186AA6NE01 2351 aa-0.59□□□□□ -2.5
SCN1A-208ENST00000625916 MYO9AB2RTY4 2548 aa-0.6□□□□□ -2.5
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms