RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 C2orf91Q6ZV80 131 aa9.87□□□□□ -0.83
LIG1-221ENST00000613670 TEX48A0A1B0GUV7 120 aa9.87□□□□□ -0.83
LIG1-221ENST00000613670 H3BMG7 143 aa9.87□□□□□ -0.83
LIG1-221ENST00000613670 IGFL3Q6UXB1 125 aa9.87□□□□□ -0.83
LIG1-221ENST00000613670 TMEM219Q86XT9 240 aa9.87□□□□□ -0.83
LIG1-221ENST00000613670 BOD1L2Q8IYS8 172 aa9.87□□□□□ -0.83
LIG1-221ENST00000613670 EEF1AKMT3Q96AZ1 226 aa9.87□□□□□ -0.83
LIG1-221ENST00000613670 C2CD3Q4AC94 2353 aa9.86□□□□□ -0.83
LIG1-221ENST00000613670 G3V318 75 aa9.86□□□□□ -0.83
LIG1-221ENST00000613670 RAB9AP51151 201 aa9.86□□□□□ -0.83
LIG1-221ENST00000613670 HERVK_113P61574 105 aa9.86□□□□□ -0.83
LIG1-221ENST00000613670 C14orf178Q8N769 122 aaPredicted RBP9.86□□□□□ -0.83
LIG1-221ENST00000613670 SHISA9B4DS77 424 aa9.86□□□□□ -0.83
LIG1-221ENST00000613670 ZNF80P51504 273 aaPredicted RBP9.86□□□□□ -0.83
LIG1-221ENST00000613670 ATP5G2Q06055 141 aa9.86□□□□□ -0.83
LIG1-221ENST00000613670 C8orf31Q8N9H6 132 aa9.86□□□□□ -0.83
LIG1-221ENST00000613670 WDFY3Q8IZQ1 3526 aa9.86□□□□□ -0.83
LIG1-221ENST00000613670 PRAC2D3DTV9 90 aa9.86□□□□□ -0.83
LIG1-221ENST00000613670 TRGV3P03979 118 aa9.86□□□□□ -0.83
LIG1-221ENST00000613670 SRD5A1P18405 259 aa9.86□□□□□ -0.83
LIG1-221ENST00000613670 GRNP28799 593 aaKnown RBP9.86□□□□□ -0.83
LIG1-221ENST00000613670 RNASE4P34096 147 aaKnown RBP9.86□□□□□ -0.83
LIG1-221ENST00000613670 GAGE13Q4V321 117 aa9.86□□□□□ -0.83
LIG1-221ENST00000613670 CHTOPQ9Y3Y2 248 aaKnown RBP9.86□□□□□ -0.83
LIG1-221ENST00000613670 SLC50A1Q9BRV3 221 aa9.85□□□□□ -0.83
LIG1-221ENST00000613670 TSSC4Q9Y5U2 329 aaPredicted RBP9.85□□□□□ -0.83
LIG1-221ENST00000613670 TRBV25-1A0A075B6N4 114 aa9.85□□□□□ -0.83
LIG1-221ENST00000613670 TMEM238LA0A1B0GVL6 79 aa9.85□□□□□ -0.83
LIG1-221ENST00000613670 A6NJY4 79 aa9.85□□□□□ -0.83
LIG1-221ENST00000613670 ZNF815PA8K554 130 aa9.85□□□□□ -0.83
LIG1-221ENST00000613670 TMEM238C9JI98 176 aa9.85□□□□□ -0.83
LIG1-221ENST00000613670 FSTL3O95633 263 aa9.84□□□□□ -0.83
LIG1-221ENST00000613670 FOXE3Q13461 319 aa9.84□□□□□ -0.83
LIG1-221ENST00000613670 ASIPP42127 132 aa9.84□□□□□ -0.83
LIG1-221ENST00000613670 SH2D6Q7Z4S9 175 aa9.84□□□□□ -0.83
LIG1-221ENST00000613670 CFHR4Q92496 578 aa9.84□□□□□ -0.83
LIG1-221ENST00000613670 SMPXQ9UHP9 88 aa9.84□□□□□ -0.83
LIG1-221ENST00000613670 COL6A3P12111 3177 aa9.83□□□□□ -0.84
LIG1-221ENST00000613670 BOD1L1Q8NFC6 3051 aa9.83□□□□□ -0.84
LIG1-221ENST00000613670 HOXA3O43365 443 aaPredicted RBP9.83□□□□□ -0.84
LIG1-221ENST00000613670 SRSF8Q9BRL6 282 aaKnown RBP9.83□□□□□ -0.84
LIG1-221ENST00000613670 PIP4P1Q86T03 277 aa9.83□□□□□ -0.84
LIG1-221ENST00000613670 FCN3O75636 299 aa9.83□□□□□ -0.84
LIG1-221ENST00000613670 PRTN3P24158 256 aa9.83□□□□□ -0.84
LIG1-221ENST00000613670 PSMG4Q5JS54 123 aa9.83□□□□□ -0.84
LIG1-221ENST00000613670 NPFFR1Q9GZQ6 430 aa9.83□□□□□ -0.84
LIG1-221ENST00000613670 BEX4Q9NWD9 120 aaPredicted RBP9.83□□□□□ -0.84
LIG1-221ENST00000613670 IGKV2D-26A0A0A0MRZ7 120 aa9.82□□□□□ -0.84
LIG1-221ENST00000613670 GAS8-AS1O95177 125 aa9.82□□□□□ -0.84
LIG1-221ENST00000613670 NEGR1Q7Z3B1 354 aa9.82□□□□□ -0.84
LIG1-221ENST00000613670 AGPAT4-IT1Q9H0P7 198 aa9.82□□□□□ -0.84
LIG1-221ENST00000613670 PGPEP1Q9NXJ5 209 aa9.82□□□□□ -0.84
LIG1-221ENST00000613670 ZNF256Q9Y2P7 627 aaPredicted RBP9.82□□□□□ -0.84
LIG1-221ENST00000613670 ATP6V0E1O15342 81 aa9.82□□□□□ -0.84
LIG1-221ENST00000613670 Q8N8P6 123 aa9.82□□□□□ -0.84
LIG1-221ENST00000613670 PRSS2P07478 247 aa9.82□□□□□ -0.84
LIG1-221ENST00000613670 WFDC2Q14508 124 aa9.82□□□□□ -0.84
LIG1-221ENST00000613670 LYRM7Q5U5X0 104 aa9.82□□□□□ -0.84
LIG1-221ENST00000613670 PTPRBP23467 1997 aa9.82□□□□□ -0.84
LIG1-221ENST00000613670 NCOR2Q9Y618 2525 aa9.82□□□□□ -0.84
LIG1-221ENST00000613670 CEACAM4O75871 244 aa9.81□□□□□ -0.84
LIG1-221ENST00000613670 CTSGP08311 255 aa9.81□□□□□ -0.84
LIG1-221ENST00000613670 FANCD2OSQ96PS1 177 aa9.81□□□□□ -0.84
LIG1-221ENST00000613670 SIVA1O15304 175 aa9.81□□□□□ -0.84
LIG1-221ENST00000613670 CEND1Q8N111 149 aa9.81□□□□□ -0.84
LIG1-221ENST00000613670 PRO3102Q9H379 93 aa9.81□□□□□ -0.84
LIG1-221ENST00000613670 IGLV11-55A0A075B6I3 123 aa9.8□□□□□ -0.84
LIG1-221ENST00000613670 A0A1B0GV72 72 aa9.8□□□□□ -0.84
LIG1-221ENST00000613670 H7C1H1 209 aa9.8□□□□□ -0.84
LIG1-221ENST00000613670 AZU1P20160 251 aa9.8□□□□□ -0.84
LIG1-221ENST00000613670 IGHV3-64A0A075B6Q5 118 aa9.8□□□□□ -0.84
LIG1-221ENST00000613670 CRYGBP07316 175 aa9.8□□□□□ -0.84
LIG1-221ENST00000613670 ODF1Q14990 250 aa9.8□□□□□ -0.84
LIG1-221ENST00000613670 ORMDL2Q53FV1 153 aa9.8□□□□□ -0.84
LIG1-221ENST00000613670 FAM159AQ6UWV7 190 aa9.8□□□□□ -0.84
LIG1-221ENST00000613670 ZNF493Q6ZR52 646 aa9.8□□□□□ -0.84
LIG1-221ENST00000613670 KIR2DL4Q99706 377 aa9.8□□□□□ -0.84
LIG1-221ENST00000613670 CACNA1AO00555 2505 aa9.8□□□□□ -0.84
LIG1-221ENST00000613670 WI2-2373I1.2A0A1W2PRP0 233 aa9.8□□□□□ -0.84
LIG1-221ENST00000613670 DPF1Q92782 380 aa9.8□□□□□ -0.84
LIG1-221ENST00000613670 FAM208BQ5VWN6 2430 aa9.8□□□□□ -0.84
LIG1-221ENST00000613670 PLNP26678 52 aa9.79□□□□□ -0.84
LIG1-221ENST00000613670 PAX8Q06710 450 aa9.79□□□□□ -0.84
LIG1-221ENST00000613670 ACACBO00763 2458 aa9.79□□□□□ -0.84
LIG1-221ENST00000613670 ZNF56Q15929 161 aa9.79□□□□□ -0.84
LIG1-221ENST00000613670 C12orf74Q32Q52 190 aa9.79□□□□□ -0.84
LIG1-221ENST00000613670 LGALS3P17931 250 aaKnown RBP9.79□□□□□ -0.84
LIG1-221ENST00000613670 DEFB1P60022 68 aa9.79□□□□□ -0.84
LIG1-221ENST00000613670 C8orf86Q6ZUL3 223 aa9.79□□□□□ -0.84
LIG1-221ENST00000613670 TRAV21A0A0B4J279 112 aa9.78□□□□□ -0.84
LIG1-221ENST00000613670 G3V4G9 280 aa9.78□□□□□ -0.84
LIG1-221ENST00000613670 SLC25A16P16260 332 aa9.78□□□□□ -0.84
LIG1-221ENST00000613670 SAA4P35542 130 aa9.78□□□□□ -0.84
LIG1-221ENST00000613670 C2orf66Q6UXQ4 117 aa9.78□□□□□ -0.84
LIG1-221ENST00000613670 A0A096LNJ9 63 aa9.77□□□□□ -0.84
LIG1-221ENST00000613670 LINC01549A6NIU2 74 aa9.77□□□□□ -0.84
LIG1-221ENST00000613670 BRD3OSQ6XYD6 125 aa9.77□□□□□ -0.84
LIG1-221ENST00000613670 RAI1Q7Z5J4 1906 aaPredicted RBP9.77□□□□□ -0.84
LIG1-221ENST00000613670 GAGE12HA6NDE8 117 aa9.77□□□□□ -0.85
LIG1-221ENST00000613670 M0R1W7 72 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 107.9 ms