RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 PMS2P5A8MQ11 134 aa4.32□□□□□ -1.72
CUX1-220ENST00000607092 NPIPB6E9PJ23 425 aa4.32□□□□□ -1.72
CUX1-220ENST00000607092 PAX4O43316 350 aa4.32□□□□□ -1.72
CUX1-220ENST00000607092 ZNF253O75346 499 aa4.32□□□□□ -1.72
CUX1-220ENST00000607092 NXPH4O95158 308 aa4.32□□□□□ -1.72
CUX1-220ENST00000607092 MBPP02686 304 aaPredicted RBP4.32□□□□□ -1.72
CUX1-220ENST00000607092 NMBP08949 121 aa4.32□□□□□ -1.72
CUX1-220ENST00000607092 TPT1P13693 172 aaKnown RBP4.32□□□□□ -1.72
CUX1-220ENST00000607092 HOXA5P20719 270 aa4.32□□□□□ -1.72
CUX1-220ENST00000607092 GCSHP23434 173 aa4.32□□□□□ -1.72
CUX1-220ENST00000607092 RPL12P30050 165 aaKnown RBP4.32□□□□□ -1.72
CUX1-220ENST00000607092 ANXA2RQ3ZCQ2 193 aa4.32□□□□□ -1.72
CUX1-220ENST00000607092 IBA57Q5T440 356 aaKnown RBP4.32□□□□□ -1.72
CUX1-220ENST00000607092 IGFL4Q6B9Z1 124 aa4.32□□□□□ -1.72
CUX1-220ENST00000607092 Q6ZRG5 221 aa4.32□□□□□ -1.72
CUX1-220ENST00000607092 Q6ZRN7 208 aaPredicted RBP4.32□□□□□ -1.72
CUX1-220ENST00000607092 Q6ZSN1 163 aa4.32□□□□□ -1.72
CUX1-220ENST00000607092 LINC00305Q7Z4B0 112 aa4.32□□□□□ -1.72
CUX1-220ENST00000607092 SH2D6Q7Z4S9 175 aa4.32□□□□□ -1.72
CUX1-220ENST00000607092 EIF4E3Q8N5X7 224 aaKnown RBP4.32□□□□□ -1.72
CUX1-220ENST00000607092 OR1L4Q8NGR5 311 aa4.32□□□□□ -1.72
CUX1-220ENST00000607092 PCNPQ8WW12 178 aaKnown RBP4.32□□□□□ -1.72
CUX1-220ENST00000607092 SAT2Q96F10 170 aaPredicted RBP4.32□□□□□ -1.72
CUX1-220ENST00000607092 SMIM8Q96KF7 97 aa4.32□□□□□ -1.72
CUX1-220ENST00000607092 LINC00477Q96M19 166 aa4.32□□□□□ -1.72
CUX1-220ENST00000607092 PFDN5Q99471 154 aa4.32□□□□□ -1.72
CUX1-220ENST00000607092 TMEM70Q9BUB7 260 aa4.32□□□□□ -1.72
CUX1-220ENST00000607092 ZNF471Q9BX82 626 aaPredicted RBP4.32□□□□□ -1.72
CUX1-220ENST00000607092 SLC25A31Q9H0C2 315 aa4.32□□□□□ -1.72
CUX1-220ENST00000607092 TMPRSS5Q9H3S3 457 aa4.32□□□□□ -1.72
CUX1-220ENST00000607092 PSENENQ9NZ42 101 aa4.32□□□□□ -1.72
CUX1-220ENST00000607092 OR5AC2Q9NZP5 309 aa4.32□□□□□ -1.72
CUX1-220ENST00000607092 FUT9Q9Y231 359 aa4.32□□□□□ -1.72
CUX1-220ENST00000607092 TRGV1A0A0A0MS02 117 aa4.31□□□□□ -1.72
CUX1-220ENST00000607092 BORCS7-ASMTA0A0B4J1R7 106 aa4.31□□□□□ -1.72
CUX1-220ENST00000607092 TRAV12-3A0A0B4J271 114 aa4.31□□□□□ -1.72
CUX1-220ENST00000607092 H3BP45 60 aa4.31□□□□□ -1.72
CUX1-220ENST00000607092 ZNF324O75467 553 aaPredicted RBP4.31□□□□□ -1.72
CUX1-220ENST00000607092 ORM1P02763 201 aa4.31□□□□□ -1.72
CUX1-220ENST00000607092 PRM2P04554 102 aa4.31□□□□□ -1.72
CUX1-220ENST00000607092 HIST1H1EP10412 219 aaKnown RBP4.31□□□□□ -1.72
CUX1-220ENST00000607092 XGP55808 180 aa4.31□□□□□ -1.72
CUX1-220ENST00000607092 BAXQ07812 192 aa4.31□□□□□ -1.72
CUX1-220ENST00000607092 PDE6HQ13956 83 aa4.31□□□□□ -1.72
CUX1-220ENST00000607092 C10orf113Q5VZT2 155 aa4.31□□□□□ -1.72
CUX1-220ENST00000607092 NEGR1Q7Z3B1 354 aa4.31□□□□□ -1.72
CUX1-220ENST00000607092 VGLL1Q99990 258 aa4.31□□□□□ -1.72
CUX1-220ENST00000607092 TXNDC17Q9BRA2 123 aa4.31□□□□□ -1.72
CUX1-220ENST00000607092 SH3BGRL3Q9H299 93 aa4.31□□□□□ -1.72
CUX1-220ENST00000607092 CYTL1Q9NRR1 136 aa4.31□□□□□ -1.72
CUX1-220ENST00000607092 MSRB1Q9NZV6 116 aa4.31□□□□□ -1.72
CUX1-220ENST00000607092 FAT1Q14517 4588 aa4.31□□□□□ -1.72
CUX1-220ENST00000607092 TRBV7-9A0A0J9YWB2 115 aa4.3□□□□□ -1.72
CUX1-220ENST00000607092 C7orf71A4D174 169 aa4.3□□□□□ -1.72
CUX1-220ENST00000607092 MRPS12O15235 138 aaKnown RBP4.3□□□□□ -1.72
CUX1-220ENST00000607092 PSCAO43653 123 aa4.3□□□□□ -1.72
CUX1-220ENST00000607092 SPINK4O60575 86 aa4.3□□□□□ -1.72
CUX1-220ENST00000607092 MPDU1O75352 247 aa4.3□□□□□ -1.72
CUX1-220ENST00000607092 PLA2G1BP04054 148 aaKnown RBP4.3□□□□□ -1.72
CUX1-220ENST00000607092 SEC11BP0C7V7 166 aa4.3□□□□□ -1.72
CUX1-220ENST00000607092 SRIP30626 198 aa4.3□□□□□ -1.72
CUX1-220ENST00000607092 CAMLGP49069 296 aa4.3□□□□□ -1.72
CUX1-220ENST00000607092 RAB5CP51148 216 aa4.3□□□□□ -1.72
CUX1-220ENST00000607092 TCL1AP56279 114 aa4.3□□□□□ -1.72
CUX1-220ENST00000607092 S100A10P60903 97 aa4.3□□□□□ -1.72
CUX1-220ENST00000607092 VAMP2P63027 116 aa4.3□□□□□ -1.72
CUX1-220ENST00000607092 BLOC1S1P78537 153 aa4.3□□□□□ -1.72
CUX1-220ENST00000607092 SRSF3P84103 164 aaKnown RBP4.3□□□□□ -1.72
CUX1-220ENST00000607092 ZNF266Q14584 549 aa4.3□□□□□ -1.72
CUX1-220ENST00000607092 TDRG1Q3Y452 100 aa4.3□□□□□ -1.72
CUX1-220ENST00000607092 ALKAL2Q6UX46 152 aa4.3□□□□□ -1.72
CUX1-220ENST00000607092 TMEM14EPQ6UXP3 125 aa4.3□□□□□ -1.72
CUX1-220ENST00000607092 TMEM182Q6ZP80 229 aaPredicted RBP4.3□□□□□ -1.72
CUX1-220ENST00000607092 Q6ZTI0 123 aa4.3□□□□□ -1.72
CUX1-220ENST00000607092 TMEM252Q8N6L7 170 aa4.3□□□□□ -1.72
CUX1-220ENST00000607092 VSIG2Q96IQ7 327 aa4.3□□□□□ -1.72
CUX1-220ENST00000607092 C11orf1Q9H5F2 150 aa4.3□□□□□ -1.72
CUX1-220ENST00000607092 AAMDCQ9H7C9 122 aa4.3□□□□□ -1.72
CUX1-220ENST00000607092 DNAJC4Q9NNZ3 241 aa4.3□□□□□ -1.72
CUX1-220ENST00000607092 HHLA3Q9XRX5 114 aa4.3□□□□□ -1.72
CUX1-220ENST00000607092 LSM5Q9Y4Y9 91 aaKnown RBP4.3□□□□□ -1.72
CUX1-220ENST00000607092 IGLV5-52A0A0A0MRZ9 124 aa4.29□□□□□ -1.72
CUX1-220ENST00000607092 RAB19A4D1S5 217 aa4.29□□□□□ -1.72
CUX1-220ENST00000607092 UMAD1C9J7I0 102 aa4.29□□□□□ -1.72
CUX1-220ENST00000607092 KRBOX1C9JBD0 128 aa4.29□□□□□ -1.72
CUX1-220ENST00000607092 C9JCJ5 164 aa4.29□□□□□ -1.72
CUX1-220ENST00000607092 TEX46H3BTG2 121 aa4.29□□□□□ -1.72
CUX1-220ENST00000607092 AGPAT2O15120 278 aa4.29□□□□□ -1.72
CUX1-220ENST00000607092 SSSCA1O60232 199 aa4.29□□□□□ -1.72
CUX1-220ENST00000607092 GPX1P07203 203 aa4.29□□□□□ -1.72
CUX1-220ENST00000607092 METTL15P1P0C7V9 234 aa4.29□□□□□ -1.72
CUX1-220ENST00000607092 DNAH10OSP0CZ25 163 aa4.29□□□□□ -1.72
CUX1-220ENST00000607092 CT45A10P0DMU9 189 aa4.29□□□□□ -1.72
CUX1-220ENST00000607092 IGLC2P0DOY2 106 aa4.29□□□□□ -1.72
CUX1-220ENST00000607092 ZNF415Q09FC8 603 aa4.29□□□□□ -1.72
CUX1-220ENST00000607092 TMEM78Q5T7P6 136 aa4.29□□□□□ -1.72
CUX1-220ENST00000607092 SERTAD4-AS1Q5TG53 156 aa4.29□□□□□ -1.72
CUX1-220ENST00000607092 UQCC3Q6UW78 93 aa4.29□□□□□ -1.72
CUX1-220ENST00000607092 LYPD5Q6UWN5 251 aa4.29□□□□□ -1.72
CUX1-220ENST00000607092 PATE2Q6UY27 113 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 118 ms