RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP14.24□□□□□ -0.13
UPF1-210ENST00000600689 TNFRSF13BO14836 293 aaPredicted RBP14.24□□□□□ -0.13
UPF1-210ENST00000600689 MFAP4P55083 255 aa14.24□□□□□ -0.13
UPF1-210ENST00000600689 COL6A6A6NMZ7 2263 aa14.24□□□□□ -0.13
UPF1-210ENST00000600689 TRBV6-1A0A0K0K1D8 114 aa14.23□□□□□ -0.13
UPF1-210ENST00000600689 CIDEAO60543 219 aa14.23□□□□□ -0.13
UPF1-210ENST00000600689 C21orf62Q9NYP8 219 aa14.23□□□□□ -0.13
UPF1-210ENST00000600689 GAGE12HA6NDE8 117 aa14.23□□□□□ -0.13
UPF1-210ENST00000600689 NBR2O15453 112 aa14.23□□□□□ -0.13
UPF1-210ENST00000600689 BMI1P35226 326 aa14.23□□□□□ -0.13
UPF1-210ENST00000600689 NDPQ00604 133 aa14.23□□□□□ -0.13
UPF1-210ENST00000600689 CDSNQ15517 529 aa14.23□□□□□ -0.13
UPF1-210ENST00000600689 CFHR4Q92496 578 aa14.23□□□□□ -0.13
UPF1-210ENST00000600689 RAXQ9Y2V3 346 aa14.23□□□□□ -0.13
UPF1-210ENST00000600689 IGLL5B9A064 214 aa14.23□□□□□ -0.13
UPF1-210ENST00000600689 C8orf31Q8N9H6 132 aa14.22□□□□□ -0.13
UPF1-210ENST00000600689 FANCD2OSQ96PS1 177 aa14.22□□□□□ -0.13
UPF1-210ENST00000600689 SMAD5-AS1Q9Y6J3 95 aa14.22□□□□□ -0.13
UPF1-210ENST00000600689 VSTM5A8MXK1 200 aa14.22□□□□□ -0.13
UPF1-210ENST00000600689 CYSLTR1Q9Y271 337 aa14.22□□□□□ -0.13
UPF1-210ENST00000600689 RPL7P18124 248 aaKnown RBP14.21□□□□□ -0.13
UPF1-210ENST00000600689 VKORC1Q9BQB6 163 aa14.21□□□□□ -0.13
UPF1-210ENST00000600689 NCOR2Q9Y618 2525 aa14.21□□□□□ -0.13
UPF1-210ENST00000600689 IGLC6P0CF74 106 aa14.21□□□□□ -0.13
UPF1-210ENST00000600689 MYOZ3Q8TDC0 251 aa14.21□□□□□ -0.13
UPF1-210ENST00000600689 SPAG8Q99932 426 aaPredicted RBP14.21□□□□□ -0.13
UPF1-210ENST00000600689 FABP5P3A8MUU1 101 aa14.21□□□□□ -0.14
UPF1-210ENST00000600689 TGFAP01135 160 aa14.21□□□□□ -0.14
UPF1-210ENST00000600689 C12orf74Q32Q52 190 aa14.21□□□□□ -0.14
UPF1-210ENST00000600689 PHLDA1Q8WV24 401 aaPredicted RBP14.21□□□□□ -0.14
UPF1-210ENST00000600689 ZNF575Q86XF7 245 aa14.2□□□□□ -0.14
UPF1-210ENST00000600689 CLUHP3Q96NS8 147 aa14.2□□□□□ -0.14
UPF1-210ENST00000600689 SPANXB1Q9NS25 103 aaPredicted RBP14.2□□□□□ -0.14
UPF1-210ENST00000600689 A0A1B0GWB2 263 aa14.19□□□□□ -0.14
UPF1-210ENST00000600689 IGHG4P01861 327 aa14.19□□□□□ -0.14
UPF1-210ENST00000600689 SCGB2A2Q13296 93 aa14.19□□□□□ -0.14
UPF1-210ENST00000600689 F8W735 103 aaPredicted RBP14.19□□□□□ -0.14
UPF1-210ENST00000600689 NXT2Q9NPJ8 142 aaKnown RBP14.19□□□□□ -0.14
UPF1-210ENST00000600689 C11orf21Q9P2W6 132 aa14.19□□□□□ -0.14
UPF1-210ENST00000600689 CD3EP07766 207 aa14.18□□□□□ -0.14
UPF1-210ENST00000600689 PDE6HQ13956 83 aa14.18□□□□□ -0.14
UPF1-210ENST00000600689 FOXI2Q6ZQN5 318 aa14.18□□□□□ -0.14
UPF1-210ENST00000600689 TTC9CQ8N5M4 171 aa14.18□□□□□ -0.14
UPF1-210ENST00000600689 HIF1ANQ9NWT6 349 aa14.18□□□□□ -0.14
UPF1-210ENST00000600689 KAAG1Q9UBP8 84 aa14.18□□□□□ -0.14
UPF1-210ENST00000600689 MSRB2Q9Y3D2 182 aa14.18□□□□□ -0.14
UPF1-210ENST00000600689 COL12A1Q99715 3063 aa14.18□□□□□ -0.14
UPF1-210ENST00000600689 ECSCRQ19T08 205 aa14.18□□□□□ -0.14
UPF1-210ENST00000600689 CD300EQ496F6 205 aaPredicted RBP14.18□□□□□ -0.14
UPF1-210ENST00000600689 RAB1BQ9H0U4 201 aa14.18□□□□□ -0.14
UPF1-210ENST00000600689 SPANXN1Q5VSR9 72 aa14.17□□□□□ -0.14
UPF1-210ENST00000600689 IGKV3D-20A0A0C4DH25 116 aa14.17□□□□□ -0.14
UPF1-210ENST00000600689 GAGE13Q4V321 117 aa14.17□□□□□ -0.14
UPF1-210ENST00000600689 CCL21O00585 134 aa14.16□□□□□ -0.14
UPF1-210ENST00000600689 EMP1P54849 157 aa14.16□□□□□ -0.14
UPF1-210ENST00000600689 CCDC144NLQ6NUI1 221 aa14.16□□□□□ -0.14
UPF1-210ENST00000600689 E9PLD3 99 aa14.16□□□□□ -0.14
UPF1-210ENST00000600689 C20orf78Q9BR46 151 aa14.16□□□□□ -0.14
UPF1-210ENST00000600689 DPM3Q9P2X0 92 aa14.16□□□□□ -0.14
UPF1-210ENST00000600689 LOC107984156A0A0G2JMH3 177 aa14.16□□□□□ -0.14
UPF1-210ENST00000600689 C5orf64Q2M2E5 130 aa14.16□□□□□ -0.14
UPF1-210ENST00000600689 ARL17AQ8IVW1 177 aa14.16□□□□□ -0.14
UPF1-210ENST00000600689 ZNF418Q8TF45 676 aaPredicted RBP14.16□□□□□ -0.14
UPF1-210ENST00000600689 TNFRSF14Q92956 283 aa14.16□□□□□ -0.14
UPF1-210ENST00000600689 H3BVH4 76 aa14.15□□□□□ -0.14
UPF1-210ENST00000600689 CTSGP08311 255 aa14.15□□□□□ -0.14
UPF1-210ENST00000600689 IGLV11-55A0A075B6I3 123 aa14.15□□□□□ -0.14
UPF1-210ENST00000600689 M0R381 172 aa14.15□□□□□ -0.14
UPF1-210ENST00000600689 DEFB1P60022 68 aa14.15□□□□□ -0.14
UPF1-210ENST00000600689 HIGD1BQ9P298 99 aa14.15□□□□□ -0.14
UPF1-210ENST00000600689 VPS13CQ709C8 3753 aa14.15□□□□□ -0.14
UPF1-210ENST00000600689 B9A039 149 aa14.14□□□□□ -0.15
UPF1-210ENST00000600689 J3QR89 54 aa14.14□□□□□ -0.15
UPF1-210ENST00000600689 ATP5LO75964 103 aa14.14□□□□□ -0.15
UPF1-210ENST00000600689 ZMAT4Q9H898 229 aa14.14□□□□□ -0.15
UPF1-210ENST00000600689 ITPR1Q14643 2758 aa14.14□□□□□ -0.15
UPF1-210ENST00000600689 LAGE3Q14657 143 aa14.14□□□□□ -0.15
UPF1-210ENST00000600689 Q8N8P6 123 aa14.14□□□□□ -0.15
UPF1-210ENST00000600689 CHTOPQ9Y3Y2 248 aaKnown RBP14.14□□□□□ -0.15
UPF1-210ENST00000600689 ZFHX3Q15911 3703 aa14.14□□□□□ -0.15
UPF1-210ENST00000600689 TM2D2Q9BX73 214 aa14.13□□□□□ -0.15
UPF1-210ENST00000600689 PTH2Q96A98 100 aa14.13□□□□□ -0.15
UPF1-210ENST00000600689 AGPAT4-IT1Q9H0P7 198 aa14.13□□□□□ -0.15
UPF1-210ENST00000600689 IGKV3-7A0A075B6H7 116 aa14.13□□□□□ -0.15
UPF1-210ENST00000600689 CLEC3BP05452 202 aa14.13□□□□□ -0.15
UPF1-210ENST00000600689 PGPEP1Q9NXJ5 209 aa14.13□□□□□ -0.15
UPF1-210ENST00000600689 APOMO95445 188 aa14.12□□□□□ -0.15
UPF1-210ENST00000600689 RAB9AP51151 201 aa14.12□□□□□ -0.15
UPF1-210ENST00000600689 MRPL16Q9NX20 251 aaKnown RBP14.12□□□□□ -0.15
UPF1-210ENST00000600689 OR11H12B2RN74 326 aa14.12□□□□□ -0.15
UPF1-210ENST00000600689 F8W1H4 67 aa14.12□□□□□ -0.15
UPF1-210ENST00000600689 IGF1P05019 195 aa14.12□□□□□ -0.15
UPF1-210ENST00000600689 SCGB1D4Q6XE38 83 aa14.12□□□□□ -0.15
UPF1-210ENST00000600689 OR11H1Q8NG94 326 aa14.12□□□□□ -0.15
UPF1-210ENST00000600689 OR11H2Q8NH07 326 aa14.12□□□□□ -0.15
UPF1-210ENST00000600689 SPTAN1Q13813 2472 aaKnown RBP14.12□□□□□ -0.15
UPF1-210ENST00000600689 LY6LH3BQJ8 138 aa14.11□□□□□ -0.15
UPF1-210ENST00000600689 C15orf32Q32M92 178 aa14.11□□□□□ -0.15
UPF1-210ENST00000600689 CLEC19AQ6UXS0 136 aa14.11□□□□□ -0.15
UPF1-210ENST00000600689 ZNF502Q8TBZ5 544 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms