RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	IBA57	Q5T440	356 aa	Known RBP	12.05	□□□□□ -0.48
SHKBP1-223	ENST00000600552		Q8N1X5	172 aa		12.05	□□□□□ -0.48
SHKBP1-223	ENST00000600552	HYLS1	Q96M11	299 aa		12.05	□□□□□ -0.48
SHKBP1-223	ENST00000600552	C18orf15	Q96N68	181 aa		12.05	□□□□□ -0.48
SHKBP1-223	ENST00000600552	WDR61	Q9GZS3	305 aa	Known RBP	12.05	□□□□□ -0.48
SHKBP1-223	ENST00000600552	PRO0255	Q9UI72	69 aa		12.05	□□□□□ -0.48
SHKBP1-223	ENST00000600552	NAGK	Q9UJ70	344 aa		12.05	□□□□□ -0.48
SHKBP1-223	ENST00000600552	RPH3AL	Q9UNE2	315 aa		12.05	□□□□□ -0.48
SHKBP1-223	ENST00000600552	C17orf112	F2Z3M2	114 aa		12.04	□□□□□ -0.48
SHKBP1-223	ENST00000600552		H0YIZ8	118 aa		12.04	□□□□□ -0.48
SHKBP1-223	ENST00000600552	SFTA3	P0C7M3	94 aa		12.04	□□□□□ -0.48
SHKBP1-223	ENST00000600552	BTF3	P20290	206 aa	Known RBP	12.04	□□□□□ -0.48
SHKBP1-223	ENST00000600552	CRYBA4	P53673	196 aa		12.04	□□□□□ -0.48
SHKBP1-223	ENST00000600552	ASAH1	Q13510	395 aa		12.04	□□□□□ -0.48
SHKBP1-223	ENST00000600552	FHL2	Q14192	279 aa		12.04	□□□□□ -0.48
SHKBP1-223	ENST00000600552	MRPL32	Q9BYC8	188 aa	Known RBP	12.04	□□□□□ -0.48
SHKBP1-223	ENST00000600552	SMIM3	Q9BZL3	60 aa		12.04	□□□□□ -0.48
SHKBP1-223	ENST00000600552	KCNIP2	Q9NS61	270 aa		12.04	□□□□□ -0.48
SHKBP1-223	ENST00000600552	MDFIC	Q9P1T7	246 aa		12.04	□□□□□ -0.48
SHKBP1-223	ENST00000600552	EREG	O14944	169 aa		12.03	□□□□□ -0.48
SHKBP1-223	ENST00000600552	UBE2L3	P68036	154 aa	Known RBP	12.03	□□□□□ -0.48
SHKBP1-223	ENST00000600552	MRPL23	Q16540	153 aa	Known RBP	12.03	□□□□□ -0.48
SHKBP1-223	ENST00000600552	TMEM183B	Q1AE95	376 aa		12.03	□□□□□ -0.48
SHKBP1-223	ENST00000600552	FFAR4	Q5NUL3	377 aa		12.03	□□□□□ -0.48
SHKBP1-223	ENST00000600552	LYPD5	Q6UWN5	251 aa		12.03	□□□□□ -0.48
SHKBP1-223	ENST00000600552	TMEM183A	Q8IXX5	376 aa		12.03	□□□□□ -0.48
SHKBP1-223	ENST00000600552	NMES1	Q9C002	83 aa		12.03	□□□□□ -0.48
SHKBP1-223	ENST00000600552	APOB	P04114	4563 aa	Known RBP	12.03	□□□□□ -0.48
SHKBP1-223	ENST00000600552	SLA	Q13239	276 aa		12.02	□□□□□ -0.49
SHKBP1-223	ENST00000600552	S100Z	Q8WXG8	99 aa		12.02	□□□□□ -0.49
SHKBP1-223	ENST00000600552	FAM159A	Q6UWV7	190 aa		12.01	□□□□□ -0.49
SHKBP1-223	ENST00000600552	NEGR1	Q7Z3B1	354 aa		12.01	□□□□□ -0.49
SHKBP1-223	ENST00000600552	SCGB1C1	Q8TD33	95 aa		12.01	□□□□□ -0.49
SHKBP1-223	ENST00000600552	PCNP	Q8WW12	178 aa	Known RBP	12.01	□□□□□ -0.49
SHKBP1-223	ENST00000600552	ZNF479	Q96JC4	524 aa		12.01	□□□□□ -0.49
SHKBP1-223	ENST00000600552	ATP5S	Q99766	215 aa		12.01	□□□□□ -0.49
SHKBP1-223	ENST00000600552	DNAH5	Q8TE73	4624 aa		12.01	□□□□□ -0.49
SHKBP1-223	ENST00000600552	INMT-MINDY4	F8WBC2	141 aa		12	□□□□□ -0.49
SHKBP1-223	ENST00000600552	SRI	P30626	198 aa		12	□□□□□ -0.49
SHKBP1-223	ENST00000600552	ERVFC1-1	P60608	527 aa		12	□□□□□ -0.49
SHKBP1-223	ENST00000600552	CYCS	P99999	105 aa	Known RBP	12	□□□□□ -0.49
SHKBP1-223	ENST00000600552	ZNF266	Q14584	549 aa		12	□□□□□ -0.49
SHKBP1-223	ENST00000600552		Q6ZRN7	208 aa	Predicted RBP	12	□□□□□ -0.49
SHKBP1-223	ENST00000600552	DIRC3	C9JPN6	131 aa		11.99	□□□□□ -0.49
SHKBP1-223	ENST00000600552	SSNA1	O43805	119 aa		11.99	□□□□□ -0.49
SHKBP1-223	ENST00000600552	IFNA5	P01569	189 aa		11.99	□□□□□ -0.49
SHKBP1-223	ENST00000600552	GYPE	P15421	78 aa		11.99	□□□□□ -0.49
SHKBP1-223	ENST00000600552	PPP1R1C	Q8WVI7	109 aa		11.99	□□□□□ -0.49
SHKBP1-223	ENST00000600552	PTTG2	Q9NZH5	202 aa		11.99	□□□□□ -0.49
SHKBP1-223	ENST00000600552	TRAV9-2	A0A087WT02	112 aa		11.98	□□□□□ -0.49
SHKBP1-223	ENST00000600552	PGP	A6NDG6	321 aa		11.98	□□□□□ -0.49
SHKBP1-223	ENST00000600552		K7EQD1	137 aa		11.98	□□□□□ -0.49
SHKBP1-223	ENST00000600552	GNRH2	O43555	120 aa		11.98	□□□□□ -0.49
SHKBP1-223	ENST00000600552	UPK1B	O75841	260 aa		11.98	□□□□□ -0.49
SHKBP1-223	ENST00000600552	DNAH10OS	P0CZ25	163 aa		11.98	□□□□□ -0.49
SHKBP1-223	ENST00000600552	KHDC3L	Q587J8	217 aa		11.98	□□□□□ -0.49
SHKBP1-223	ENST00000600552	WFDC10B	Q8IUB3	73 aa		11.98	□□□□□ -0.49
SHKBP1-223	ENST00000600552	CMTM2	Q8TAZ6	248 aa		11.98	□□□□□ -0.49
SHKBP1-223	ENST00000600552	HSPB11	Q9Y547	144 aa		11.98	□□□□□ -0.49
SHKBP1-223	ENST00000600552	LY96	Q9Y6Y9	160 aa		11.98	□□□□□ -0.49
SHKBP1-223	ENST00000600552	TRGV11	A0A075B6L2	103 aa		11.97	□□□□□ -0.49
SHKBP1-223	ENST00000600552	RBAKDN	A6NC62	111 aa		11.97	□□□□□ -0.49
SHKBP1-223	ENST00000600552	H2BFS	P57053	126 aa		11.97	□□□□□ -0.49
SHKBP1-223	ENST00000600552	TAS2R45	P59539	299 aa		11.97	□□□□□ -0.49
SHKBP1-223	ENST00000600552	LYPD1	Q8N2G4	141 aa		11.97	□□□□□ -0.49
SHKBP1-223	ENST00000600552	OR4C5	Q8NGB2	326 aa		11.97	□□□□□ -0.49
SHKBP1-223	ENST00000600552	SPX	Q9BT56	116 aa		11.97	□□□□□ -0.49
SHKBP1-223	ENST00000600552	PGPEP1	Q9NXJ5	209 aa		11.97	□□□□□ -0.49
SHKBP1-223	ENST00000600552	MBD2	Q9UBB5	411 aa		11.97	□□□□□ -0.49
SHKBP1-223	ENST00000600552	IGHV3-16	A0A0C4DH30	117 aa		11.96	□□□□□ -0.49
SHKBP1-223	ENST00000600552	TRBV7-9	A0A0J9YWB2	115 aa		11.96	□□□□□ -0.49
SHKBP1-223	ENST00000600552	HMGB3	O15347	200 aa	Known RBP	11.96	□□□□□ -0.49
SHKBP1-223	ENST00000600552	RPL12	P30050	165 aa	Known RBP	11.96	□□□□□ -0.49
SHKBP1-223	ENST00000600552	IFITM3	Q01628	133 aa		11.96	□□□□□ -0.49
SHKBP1-223	ENST00000600552	GOLT1A	Q6ZVE7	132 aa		11.96	□□□□□ -0.49
SHKBP1-223	ENST00000600552	NFE4	Q86UQ8	179 aa		11.96	□□□□□ -0.49
SHKBP1-223	ENST00000600552	LOC100131303	A0A0U1RQF7	123 aa		11.95	□□□□□ -0.5
SHKBP1-223	ENST00000600552		F6UZH7	168 aa		11.95	□□□□□ -0.5
SHKBP1-223	ENST00000600552	MPC2	O95563	127 aa		11.95	□□□□□ -0.5
SHKBP1-223	ENST00000600552	EVI2A	P22794	236 aa		11.95	□□□□□ -0.5
SHKBP1-223	ENST00000600552		Q6AWC8	147 aa		11.95	□□□□□ -0.5
SHKBP1-223	ENST00000600552	OR10G4	Q8NGN3	311 aa		11.95	□□□□□ -0.5
SHKBP1-223	ENST00000600552	OTOR	Q9NRC9	128 aa		11.95	□□□□□ -0.5
SHKBP1-223	ENST00000600552	MSRB1	Q9NZV6	116 aa		11.95	□□□□□ -0.5
SHKBP1-223	ENST00000600552		A0A1W2PPV4	95 aa		11.94	□□□□□ -0.5
SHKBP1-223	ENST00000600552	EPM2A	B3EWF7	344 aa		11.94	□□□□□ -0.5
SHKBP1-223	ENST00000600552	GNG5	P63218	68 aa		11.94	□□□□□ -0.5
SHKBP1-223	ENST00000600552	FAM74A1	Q5RGS3	127 aa		11.94	□□□□□ -0.5
SHKBP1-223	ENST00000600552	NHLRC2	Q8NBF2	726 aa		11.94	□□□□□ -0.5
SHKBP1-223	ENST00000600552	RASL10A	Q92737	203 aa		11.94	□□□□□ -0.5
SHKBP1-223	ENST00000600552	SGK494	Q96LW2	274 aa		11.94	□□□□□ -0.5
SHKBP1-223	ENST00000600552	WFDC1	Q9HC57	220 aa		11.94	□□□□□ -0.5
SHKBP1-223	ENST00000600552		A0A087WTM6	91 aa		11.93	□□□□□ -0.5
SHKBP1-223	ENST00000600552	TRAV8-1	A0A0A6YYK1	113 aa		11.93	□□□□□ -0.5
SHKBP1-223	ENST00000600552	ORM1	P02763	201 aa		11.93	□□□□□ -0.5
SHKBP1-223	ENST00000600552	PET100	P0DJ07	73 aa		11.93	□□□□□ -0.5
SHKBP1-223	ENST00000600552	ACOT6	Q3I5F7	207 aa	Predicted RBP	11.93	□□□□□ -0.5
SHKBP1-223	ENST00000600552	LINC00299	Q6ZSB3	139 aa		11.93	□□□□□ -0.5
SHKBP1-223	ENST00000600552	IQCF2	Q8IXL9	164 aa		11.93	□□□□□ -0.5
SHKBP1-223	ENST00000600552	TXNDC17	Q9BRA2	123 aa		11.93	□□□□□ -0.5

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