RNA–Protein interactions for RNA: ENST00000594067.5

LIG1-206, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-206ENST00000594067 TM4SF20Q53R12 229 aa12.72□□□□□ -0.37
LIG1-206ENST00000594067 CLEC19AQ6UXS0 136 aa12.72□□□□□ -0.37
LIG1-206ENST00000594067 OR5A1Q8NGJ0 315 aa12.72□□□□□ -0.37
LIG1-206ENST00000594067 ZMAT4Q9H898 229 aa12.72□□□□□ -0.37
LIG1-206ENST00000594067 EVI2AP22794 236 aa12.72□□□□□ -0.37
LIG1-206ENST00000594067 ODF1Q14990 250 aa12.72□□□□□ -0.37
LIG1-206ENST00000594067 RAXQ9Y2V3 346 aa12.72□□□□□ -0.37
LIG1-206ENST00000594067 ZNF207O43670 478 aaKnown RBP12.71□□□□□ -0.37
LIG1-206ENST00000594067 GATA1P15976 413 aaPredicted RBP12.71□□□□□ -0.37
LIG1-206ENST00000594067 KLRB1Q12918 225 aa12.71□□□□□ -0.37
LIG1-206ENST00000594067 TTTY13Q9BZ97 58 aa12.71□□□□□ -0.37
LIG1-206ENST00000594067 MAP1LC3AQ9H492 121 aa12.71□□□□□ -0.37
LIG1-206ENST00000594067 ATRXP46100 2492 aa12.71□□□□□ -0.37
LIG1-206ENST00000594067 CACNA1BQ00975 2339 aa12.71□□□□□ -0.37
LIG1-206ENST00000594067 TMEM238C9JI98 176 aa12.71□□□□□ -0.38
LIG1-206ENST00000594067 SRSF2Q01130 221 aaKnown RBP12.71□□□□□ -0.38
LIG1-206ENST00000594067 AJUBAQ96IF1 538 aa12.71□□□□□ -0.38
LIG1-206ENST00000594067 CLPSL1A2RUU4 121 aa12.7□□□□□ -0.38
LIG1-206ENST00000594067 GOSR1O95249 250 aa12.7□□□□□ -0.38
LIG1-206ENST00000594067 LEPP41159 167 aa12.7□□□□□ -0.38
LIG1-206ENST00000594067 FXYD2P54710 66 aa12.7□□□□□ -0.38
LIG1-206ENST00000594067 DTX2Q86UW9 622 aa12.7□□□□□ -0.38
LIG1-206ENST00000594067 CCDC140Q96MF4 163 aa12.7□□□□□ -0.38
LIG1-206ENST00000594067 SMIM13P0DJ93 91 aa12.7□□□□□ -0.38
LIG1-206ENST00000594067 FCER1GP30273 86 aa12.7□□□□□ -0.38
LIG1-206ENST00000594067 SAMD5Q5TGI4 173 aa12.7□□□□□ -0.38
LIG1-206ENST00000594067 CNFNQ9BYD5 112 aa12.7□□□□□ -0.38
LIG1-206ENST00000594067 IGF2RP11717 2491 aa12.7□□□□□ -0.38
LIG1-206ENST00000594067 TNFRSF6BO95407 300 aa12.69□□□□□ -0.38
LIG1-206ENST00000594067 FABP2P12104 132 aa12.69□□□□□ -0.38
LIG1-206ENST00000594067 SAA4P35542 130 aa12.69□□□□□ -0.38
LIG1-206ENST00000594067 LINC01559Q495D7 138 aa12.69□□□□□ -0.38
LIG1-206ENST00000594067 HIGD1BQ9P298 99 aa12.69□□□□□ -0.38
LIG1-206ENST00000594067 GCSHP23434 173 aa12.69□□□□□ -0.38
LIG1-206ENST00000594067 AGPAT4-IT1Q9H0P7 198 aa12.69□□□□□ -0.38
LIG1-206ENST00000594067 C11orf21Q9P2W6 132 aa12.69□□□□□ -0.38
LIG1-206ENST00000594067 IGKV3D-20A0A0C4DH25 116 aa12.68□□□□□ -0.38
LIG1-206ENST00000594067 UBE2E1P51965 193 aa12.68□□□□□ -0.38
LIG1-206ENST00000594067 PRSS1P07477 247 aa12.67□□□□□ -0.38
LIG1-206ENST00000594067 RAB9AP51151 201 aa12.67□□□□□ -0.38
LIG1-206ENST00000594067 PSMG4Q5JS54 123 aa12.67□□□□□ -0.38
LIG1-206ENST00000594067 SLC50A1Q9BRV3 221 aa12.67□□□□□ -0.38
LIG1-206ENST00000594067 UBTD1Q9HAC8 227 aa12.67□□□□□ -0.38
LIG1-206ENST00000594067 NXT2Q9NPJ8 142 aaKnown RBP12.67□□□□□ -0.38
LIG1-206ENST00000594067 TRAV8-2A0A0B4J237 113 aa12.67□□□□□ -0.38
LIG1-206ENST00000594067 COL6A6A6NMZ7 2263 aa12.67□□□□□ -0.38
LIG1-206ENST00000594067 RBAKDNA6NC62 111 aa12.66□□□□□ -0.38
LIG1-206ENST00000594067 TRGV3P03979 118 aa12.66□□□□□ -0.38
LIG1-206ENST00000594067 Q6ZQT7 251 aa12.66□□□□□ -0.38
LIG1-206ENST00000594067 PHLDA1Q8WV24 401 aaPredicted RBP12.66□□□□□ -0.38
LIG1-206ENST00000594067 CHAC1Q9BUX1 264 aa12.66□□□□□ -0.38
LIG1-206ENST00000594067 TRBV25-1A0A075B6N4 114 aa12.66□□□□□ -0.38
LIG1-206ENST00000594067 IGKCP01834 107 aa12.66□□□□□ -0.38
LIG1-206ENST00000594067 SMIM17P0DL12 118 aa12.66□□□□□ -0.38
LIG1-206ENST00000594067 EEF1AKMT3Q96AZ1 226 aa12.65□□□□□ -0.38
LIG1-206ENST00000594067 TMEM78Q5T7P6 136 aa12.65□□□□□ -0.38
LIG1-206ENST00000594067 GTSCR1Q86UQ5 136 aa12.65□□□□□ -0.38
LIG1-206ENST00000594067 TMEM158Q8WZ71 300 aa12.65□□□□□ -0.38
LIG1-206ENST00000594067 SPTBN1Q01082 2364 aaKnown RBP12.65□□□□□ -0.38
LIG1-206ENST00000594067 CENPVL3A0A0U1RRI6 287 aa12.65□□□□□ -0.39
LIG1-206ENST00000594067 K7ERJ3 54 aa12.65□□□□□ -0.39
LIG1-206ENST00000594067 C8orf86Q6ZUL3 223 aa12.65□□□□□ -0.39
LIG1-206ENST00000594067 METTL26Q96S19 204 aa12.65□□□□□ -0.39
LIG1-206ENST00000594067 FOXC2Q99958 501 aa12.65□□□□□ -0.39
LIG1-206ENST00000594067 LINC00527Q9UJ94 153 aa12.65□□□□□ -0.39
LIG1-206ENST00000594067 IGLV2-18A0A075B6J9 118 aa12.64□□□□□ -0.39
LIG1-206ENST00000594067 ZC2HC1BQ5TFG8 222 aa12.64□□□□□ -0.39
LIG1-206ENST00000594067 TMEM219Q86XT9 240 aa12.64□□□□□ -0.39
LIG1-206ENST00000594067 BPESC1Q9GZL8 116 aa12.64□□□□□ -0.39
LIG1-206ENST00000594067 KLK9Q2XQG4 91 aa12.64□□□□□ -0.39
LIG1-206ENST00000594067 KLK9Q9UKQ9 250 aa12.64□□□□□ -0.39
LIG1-206ENST00000594067 TRAV26-2A0A0B4J265 109 aa12.63□□□□□ -0.39
LIG1-206ENST00000594067 TM2D2Q9BX73 214 aa12.63□□□□□ -0.39
LIG1-206ENST00000594067 SMPXQ9UHP9 88 aa12.63□□□□□ -0.39
LIG1-206ENST00000594067 IGHV3OR16-10A0A075B7F0 116 aa12.63□□□□□ -0.39
LIG1-206ENST00000594067 TMEM8BA6NDV4 472 aa12.63□□□□□ -0.39
LIG1-206ENST00000594067 DPM2O94777 84 aa12.63□□□□□ -0.39
LIG1-206ENST00000594067 LMO4P61968 165 aa12.63□□□□□ -0.39
LIG1-206ENST00000594067 UFC1Q9Y3C8 167 aa12.63□□□□□ -0.39
LIG1-206ENST00000594067 IGHV7-4-1A0A0J9YVY3 117 aa12.62□□□□□ -0.39
LIG1-206ENST00000594067 TEX48A0A1B0GUV7 120 aa12.62□□□□□ -0.39
LIG1-206ENST00000594067 NPFFO15130 113 aa12.62□□□□□ -0.39
LIG1-206ENST00000594067 ATP5LO75964 103 aa12.62□□□□□ -0.39
LIG1-206ENST00000594067 RPL24P83731 157 aaKnown RBP12.62□□□□□ -0.39
LIG1-206ENST00000594067 Q8N8P6 123 aa12.62□□□□□ -0.39
LIG1-206ENST00000594067 ZFHX3Q15911 3703 aa12.62□□□□□ -0.39
LIG1-206ENST00000594067 TRBV7-1A0A0A6YYK4 115 aa12.62□□□□□ -0.39
LIG1-206ENST00000594067 EFNA4P52798 201 aa12.62□□□□□ -0.39
LIG1-206ENST00000594067 UCNP55089 124 aa12.62□□□□□ -0.39
LIG1-206ENST00000594067 CEND1Q8N111 149 aa12.62□□□□□ -0.39
LIG1-206ENST00000594067 NHP2Q9NX24 153 aaKnown RBP12.62□□□□□ -0.39
LIG1-206ENST00000594067 TRAV40A0A0B4J280 105 aa12.61□□□□□ -0.39
LIG1-206ENST00000594067 K7EMI3 77 aa12.61□□□□□ -0.39
LIG1-206ENST00000594067 ATP5G2Q06055 141 aa12.61□□□□□ -0.39
LIG1-206ENST00000594067 C5orf56Q8N8D9 126 aa12.61□□□□□ -0.39
LIG1-206ENST00000594067 AKAP6Q13023 2319 aa12.61□□□□□ -0.39
LIG1-206ENST00000594067 J3KRW8 73 aa12.61□□□□□ -0.39
LIG1-206ENST00000594067 TMEM160Q9NX00 188 aa12.61□□□□□ -0.39
LIG1-206ENST00000594067 MAPKAPK5-AS1Q8N8E1 139 aa12.6□□□□□ -0.39
LIG1-206ENST00000594067 C16orf92Q96LL3 132 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms