RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 TCTAP57738 103 aa-0.48□□□□□ -2.49
SS18-214ENST00000580003 RPL19P84098 196 aaKnown RBP-0.48□□□□□ -2.49
SS18-214ENST00000580003 TMED4Q7Z7H5 227 aa-0.48□□□□□ -2.49
SS18-214ENST00000580003 CLEC2BQ92478 149 aa-0.48□□□□□ -2.49
SS18-214ENST00000580003 DMAC1Q96GE9 116 aa-0.48□□□□□ -2.49
SS18-214ENST00000580003 BIN3Q9NQY0 253 aa-0.48□□□□□ -2.49
SS18-214ENST00000580003 OTORQ9NRC9 128 aa-0.48□□□□□ -2.49
SS18-214ENST00000580003 SS18L2Q9UHA2 77 aa-0.48□□□□□ -2.49
SS18-214ENST00000580003 ADGBQ8N7X0 1667 aa-0.49□□□□□ -2.49
SS18-214ENST00000580003 LOC107986453A0A1B0GWG9 222 aa-0.49□□□□□ -2.49
SS18-214ENST00000580003 IFITM5A6NNB3 132 aa-0.49□□□□□ -2.49
SS18-214ENST00000580003 GLRXP35754 106 aa-0.49□□□□□ -2.49
SS18-214ENST00000580003 MAXP61244 160 aa-0.49□□□□□ -2.49
SS18-214ENST00000580003 PRELID3AQ96N28 172 aa-0.49□□□□□ -2.49
SS18-214ENST00000580003 TPST1O60507 370 aa-0.5□□□□□ -2.49
SS18-214ENST00000580003 ETV6P41212 452 aa-0.5□□□□□ -2.49
SS18-214ENST00000580003 PRR15LQ9BU68 103 aa-0.5□□□□□ -2.49
SS18-214ENST00000580003 LRTM1Q9HBL6 345 aa-0.5□□□□□ -2.49
SS18-214ENST00000580003 MED11Q9P086 117 aa-0.5□□□□□ -2.49
SS18-214ENST00000580003 STOML2Q9UJZ1 356 aa-0.5□□□□□ -2.49
SS18-214ENST00000580003 ATG2AQ2TAZ0 1938 aa-0.5□□□□□ -2.49
SS18-214ENST00000580003 ASXL3Q9C0F0 2248 aa-0.5□□□□□ -2.49
SS18-214ENST00000580003 TMEM189A5PLL7 270 aa-0.51□□□□□ -2.49
SS18-214ENST00000580003 MFSD11O43934 449 aa-0.51□□□□□ -2.49
SS18-214ENST00000580003 SRP9P49458 86 aaKnown RBP-0.51□□□□□ -2.49
SS18-214ENST00000580003 LSM3P62310 102 aaKnown RBP-0.51□□□□□ -2.49
SS18-214ENST00000580003 LTC4SQ16873 150 aa-0.51□□□□□ -2.49
SS18-214ENST00000580003 IDO2Q6ZQW0 420 aa-0.51□□□□□ -2.49
SS18-214ENST00000580003 FGD6Q6ZV73 1430 aa-0.51□□□□□ -2.49
SS18-214ENST00000580003 KIAA1549LQ6ZVL6 1849 aa-0.51□□□□□ -2.49
SS18-214ENST00000580003 PPP1R1CQ8WVI7 109 aa-0.51□□□□□ -2.49
SS18-214ENST00000580003 DSCR8Q96T75 97 aa-0.51□□□□□ -2.49
SS18-214ENST00000580003 HMCN2Q8NDA2 5059 aa-0.51□□□□□ -2.49
SS18-214ENST00000580003 UBR5O95071 2799 aaPredicted RBP-0.51□□□□□ -2.49
SS18-214ENST00000580003 TNXBP22105 4242 aa-0.52□□□□□ -2.49
SS18-214ENST00000580003 YTHDC2Q9H6S0 1430 aaKnown RBP-0.52□□□□□ -2.49
SS18-214ENST00000580003 NSD1Q96L73 2696 aaPredicted RBP-0.52□□□□□ -2.49
SS18-214ENST00000580003 BCL2P10415 239 aa-0.52□□□□□ -2.49
SS18-214ENST00000580003 SDC4P31431 198 aa-0.52□□□□□ -2.49
SS18-214ENST00000580003 SDC2P34741 201 aa-0.52□□□□□ -2.49
SS18-214ENST00000580003 GNG3P63215 75 aa-0.52□□□□□ -2.49
SS18-214ENST00000580003 COX6A2Q02221 97 aa-0.52□□□□□ -2.49
SS18-214ENST00000580003 RHOHQ15669 191 aa-0.52□□□□□ -2.49
SS18-214ENST00000580003 CELSR1Q9NYQ6 3014 aa-0.52□□□□□ -2.49
SS18-214ENST00000580003 POLQO75417 2590 aa-0.52□□□□□ -2.49
SS18-214ENST00000580003 NEBP20929 6669 aa-0.53□□□□□ -2.49
SS18-214ENST00000580003 A0A0G2JMM0 328 aa-0.53□□□□□ -2.49
SS18-214ENST00000580003 C10orf142B7Z368 130 aa-0.53□□□□□ -2.49
SS18-214ENST00000580003 MPC1LP0DKB6 136 aa-0.53□□□□□ -2.49
SS18-214ENST00000580003 LYPD5Q6UWN5 251 aa-0.53□□□□□ -2.49
SS18-214ENST00000580003 STX19Q8N4C7 294 aa-0.53□□□□□ -2.49
SS18-214ENST00000580003 FAM24BQ8N5W8 94 aa-0.53□□□□□ -2.49
SS18-214ENST00000580003 ATG5Q9H1Y0 275 aa-0.53□□□□□ -2.49
SS18-214ENST00000580003 TAF9BQ9HBM6 251 aa-0.53□□□□□ -2.49
SS18-214ENST00000580003 LAMTOR2Q9Y2Q5 125 aa-0.53□□□□□ -2.49
SS18-214ENST00000580003 TRAV16A0A0A6YYK6 109 aaPredicted RBP-0.54□□□□□ -2.5
SS18-214ENST00000580003 TRDV1A0A1B0GX56 115 aa-0.54□□□□□ -2.5
SS18-214ENST00000580003 E2F6O75461 281 aa-0.54□□□□□ -2.5
SS18-214ENST00000580003 GTF2A1P52655 376 aaPredicted RBP-0.54□□□□□ -2.5
SS18-214ENST00000580003 SMIM7Q9BQ49 75 aa-0.54□□□□□ -2.5
SS18-214ENST00000580003 COMMD3Q9UBI1 195 aa-0.54□□□□□ -2.5
SS18-214ENST00000580003 JMJD1CQ15652 2540 aa-0.55□□□□□ -2.5
SS18-214ENST00000580003 TRBV27A0A0K0K1C4 114 aa-0.55□□□□□ -2.5
SS18-214ENST00000580003 PGRMC1O00264 195 aaKnown RBP-0.55□□□□□ -2.5
SS18-214ENST00000580003 EDF1O60869 148 aaKnown RBP-0.55□□□□□ -2.5
SS18-214ENST00000580003 PFDN1O60925 122 aa-0.55□□□□□ -2.5
SS18-214ENST00000580003 DYDC1Q8WWB3 177 aa-0.55□□□□□ -2.5
SS18-214ENST00000580003 DLC1Q96QB1 1528 aa-0.55□□□□□ -2.5
SS18-214ENST00000580003 FLNCQ14315 2725 aa-0.55□□□□□ -2.5
SS18-214ENST00000580003 BLMP54132 1417 aaPredicted RBP-0.55□□□□□ -2.5
SS18-214ENST00000580003 USP54Q70EL1 1684 aa-0.56□□□□□ -2.5
SS18-214ENST00000580003 EIF3AQ14152 1382 aaKnown RBP-0.56□□□□□ -2.5
SS18-214ENST00000580003 USH2AO75445 5202 aa-0.56□□□□□ -2.5
SS18-214ENST00000580003 CARD19Q96LW7 228 aa-0.56□□□□□ -2.5
SS18-214ENST00000580003 COA4Q9NYJ1 87 aa-0.56□□□□□ -2.5
SS18-214ENST00000580003 ANK1P16157 1881 aa-0.56□□□□□ -2.5
SS18-214ENST00000580003 CELSR2Q9HCU4 2923 aa-0.57□□□□□ -2.5
SS18-214ENST00000580003 F2Z2F3 143 aa-0.57□□□□□ -2.5
SS18-214ENST00000580003 LINC00305Q7Z4B0 112 aa-0.57□□□□□ -2.5
SS18-214ENST00000580003 SMIM20Q8N5G0 67 aa-0.57□□□□□ -2.5
SS18-214ENST00000580003 LXNQ9BS40 222 aa-0.57□□□□□ -2.5
SS18-214ENST00000580003 TECPR2O15040 1411 aa-0.57□□□□□ -2.5
SS18-214ENST00000580003 UNC13BO14795 1591 aa-0.57□□□□□ -2.5
SS18-214ENST00000580003 LRP2P98164 4655 aa-0.58□□□□□ -2.5
SS18-214ENST00000580003 TANC1Q9C0D5 1861 aa-0.58□□□□□ -2.5
SS18-214ENST00000580003 TCOF1Q13428 1488 aaKnown RBP-0.58□□□□□ -2.5
SS18-214ENST00000580003 CDK12Q9NYV4 1490 aaPredicted RBP-0.58□□□□□ -2.5
SS18-214ENST00000580003 GABARAPH6UMI1 98 aa-0.58□□□□□ -2.5
SS18-214ENST00000580003 TAS2R41P59536 307 aa-0.58□□□□□ -2.5
SS18-214ENST00000580003 KRTAP20-2Q3LI61 65 aa-0.58□□□□□ -2.5
SS18-214ENST00000580003 UFC1Q9Y3C8 167 aa-0.58□□□□□ -2.5
SS18-214ENST00000580003 HERC1Q15751 4861 aa-0.58□□□□□ -2.5
SS18-214ENST00000580003 STAB1Q9NY15 2570 aa-0.58□□□□□ -2.5
SS18-214ENST00000580003 AFDNP55196 1824 aaKnown RBP-0.59□□□□□ -2.5
SS18-214ENST00000580003 ESPL1Q14674 2120 aa-0.59□□□□□ -2.5
SS18-214ENST00000580003 TRAV13-1A0A0B4J241 112 aa-0.59□□□□□ -2.5
SS18-214ENST00000580003 TEX49A0A1B0GTD5 131 aa-0.59□□□□□ -2.5
SS18-214ENST00000580003 IFNA21P01568 189 aa-0.59□□□□□ -2.5
SS18-214ENST00000580003 APOC1P02654 83 aa-0.59□□□□□ -2.5
SS18-214ENST00000580003 CCKP06307 115 aa-0.59□□□□□ -2.5
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms