RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 PRAC1Q96KF2 57 aa5.16□□□□□ -1.58
VPS53-217ENST00000575100 UQCC1Q9NVA1 299 aa5.16□□□□□ -1.58
VPS53-217ENST00000575100 SPANXCQ9NY87 97 aa5.16□□□□□ -1.58
VPS53-217ENST00000575100 YTHDF2Q9Y5A9 579 aaKnown RBP5.16□□□□□ -1.58
VPS53-217ENST00000575100 TRAV8-6A0A0B4J262 113 aa5.15□□□□□ -1.58
VPS53-217ENST00000575100 IGHV1-69DA0A0B4J2H0 117 aa5.15□□□□□ -1.58
VPS53-217ENST00000575100 MDFIC2A0A1B0GVS7 189 aa5.15□□□□□ -1.58
VPS53-217ENST00000575100 M0R2Z0 102 aa5.15□□□□□ -1.58
VPS53-217ENST00000575100 OR2A4O95047 310 aa5.15□□□□□ -1.58
VPS53-217ENST00000575100 IGHV1-69P01742 117 aa5.15□□□□□ -1.58
VPS53-217ENST00000575100 NMBP08949 121 aa5.15□□□□□ -1.58
VPS53-217ENST00000575100 P0C879 139 aa5.15□□□□□ -1.58
VPS53-217ENST00000575100 THBS3P49746 956 aa5.15□□□□□ -1.58
VPS53-217ENST00000575100 GNG5P63218 68 aa5.15□□□□□ -1.58
VPS53-217ENST00000575100 SRPXP78539 464 aa5.15□□□□□ -1.58
VPS53-217ENST00000575100 CATR1Q13166 79 aa5.15□□□□□ -1.58
VPS53-217ENST00000575100 Q6ZRP5 223 aa5.15□□□□□ -1.58
VPS53-217ENST00000575100 ZNF695Q8IW36 515 aa5.15□□□□□ -1.58
VPS53-217ENST00000575100 FER1L6-AS1Q8NA97 138 aa5.15□□□□□ -1.58
VPS53-217ENST00000575100 OR2A7Q96R45 310 aa5.15□□□□□ -1.58
VPS53-217ENST00000575100 C1QTNF4Q9BXJ3 329 aa5.15□□□□□ -1.58
VPS53-217ENST00000575100 SMCO4Q9NRQ5 59 aa5.15□□□□□ -1.58
VPS53-217ENST00000575100 IGHV4-4A0A075B6R2 117 aa5.15□□□□□ -1.59
VPS53-217ENST00000575100 IGHV1OR15-1A0A075B7D0 117 aa5.15□□□□□ -1.59
VPS53-217ENST00000575100 TRAV8-2A0A0B4J237 113 aa5.15□□□□□ -1.59
VPS53-217ENST00000575100 A0A1B0GX51 115 aa5.15□□□□□ -1.59
VPS53-217ENST00000575100 J3KT08 172 aa5.15□□□□□ -1.59
VPS53-217ENST00000575100 FSHBP01225 129 aa5.15□□□□□ -1.59
VPS53-217ENST00000575100 IGLV2-23P01705 113 aa5.15□□□□□ -1.59
VPS53-217ENST00000575100 VDAC2P45880 294 aaPredicted RBP5.15□□□□□ -1.59
VPS53-217ENST00000575100 IL15RAQ13261 267 aa5.15□□□□□ -1.59
VPS53-217ENST00000575100 C10orf91Q5T1B1 145 aa5.15□□□□□ -1.59
VPS53-217ENST00000575100 ZNF705AQ6ZN79 300 aaPredicted RBP5.15□□□□□ -1.59
VPS53-217ENST00000575100 NFE4Q86UQ8 179 aa5.15□□□□□ -1.59
VPS53-217ENST00000575100 OR1S1Q8NH92 325 aa5.15□□□□□ -1.59
VPS53-217ENST00000575100 PRNDQ9UKY0 176 aa5.15□□□□□ -1.59
VPS53-217ENST00000575100 PKIGQ9Y2B9 76 aa5.15□□□□□ -1.59
VPS53-217ENST00000575100 AMMECR1Q9Y4X0 333 aaPredicted RBP5.15□□□□□ -1.59
VPS53-217ENST00000575100 TRAV14DV4A0A0A6YYC5 116 aa5.14□□□□□ -1.59
VPS53-217ENST00000575100 YIF1AO95070 293 aa5.14□□□□□ -1.59
VPS53-217ENST00000575100 IGKV1D-33P01593 117 aa5.14□□□□□ -1.59
VPS53-217ENST00000575100 IGKV1-33P01594 117 aa5.14□□□□□ -1.59
VPS53-217ENST00000575100 GZMBP10144 247 aa5.14□□□□□ -1.59
VPS53-217ENST00000575100 IL3RAP26951 378 aa5.14□□□□□ -1.59
VPS53-217ENST00000575100 SRIP30626 198 aa5.14□□□□□ -1.59
VPS53-217ENST00000575100 EMP1P54849 157 aa5.14□□□□□ -1.59
VPS53-217ENST00000575100 EIF5AP63241 154 aaKnown RBP5.14□□□□□ -1.59
VPS53-217ENST00000575100 PMVKQ15126 192 aa5.14□□□□□ -1.59
VPS53-217ENST00000575100 MRGPRG-AS1Q2M3A8 158 aa5.14□□□□□ -1.59
VPS53-217ENST00000575100 MINOS1Q5TGZ0 78 aa5.14□□□□□ -1.59
VPS53-217ENST00000575100 ZNF575Q86XF7 245 aa5.14□□□□□ -1.59
VPS53-217ENST00000575100 C3orf56Q8N813 242 aa5.14□□□□□ -1.59
VPS53-217ENST00000575100 PPP1R1CQ8WVI7 109 aa5.14□□□□□ -1.59
VPS53-217ENST00000575100 ANAPC13Q9BS18 74 aa5.14□□□□□ -1.59
VPS53-217ENST00000575100 TUBA4BQ9H853 241 aa5.14□□□□□ -1.59
VPS53-217ENST00000575100 CACNG5Q9UF02 275 aa5.14□□□□□ -1.59
VPS53-217ENST00000575100 MINOS1-NBL1R4GNA1 71 aa5.14□□□□□ -1.59
VPS53-217ENST00000575100 MGAM2Q2M2H8 2515 aa5.14□□□□□ -1.59
VPS53-217ENST00000575100 MEGF8Q7Z7M0 2845 aa5.14□□□□□ -1.59
VPS53-217ENST00000575100 E7EUB6 86 aa5.13□□□□□ -1.59
VPS53-217ENST00000575100 PITX3O75364 302 aa5.13□□□□□ -1.59
VPS53-217ENST00000575100 ATP5G1P05496 136 aa5.13□□□□□ -1.59
VPS53-217ENST00000575100 SAA1P0DJI8 122 aaPredicted RBP5.13□□□□□ -1.59
VPS53-217ENST00000575100 EVI2AP22794 236 aa5.13□□□□□ -1.59
VPS53-217ENST00000575100 HSD52Q0P140 79 aa5.13□□□□□ -1.59
VPS53-217ENST00000575100 GTF2H5Q6ZYL4 71 aa5.13□□□□□ -1.59
VPS53-217ENST00000575100 C5orf17Q8NAS9 161 aa5.13□□□□□ -1.59
VPS53-217ENST00000575100 OR2T35Q8NGX2 323 aa5.13□□□□□ -1.59
VPS53-217ENST00000575100 TMEM101Q96IK0 257 aa5.13□□□□□ -1.59
VPS53-217ENST00000575100 MIEN1Q9BRT3 115 aa5.13□□□□□ -1.59
VPS53-217ENST00000575100 WASHC3Q9Y3C0 194 aa5.13□□□□□ -1.59
VPS53-217ENST00000575100 NDUFS5O43920 106 aa5.13□□□□□ -1.59
VPS53-217ENST00000575100 APOA2P02652 100 aa5.13□□□□□ -1.59
VPS53-217ENST00000575100 ORM2P19652 201 aa5.13□□□□□ -1.59
VPS53-217ENST00000575100 GNG4P50150 75 aa5.13□□□□□ -1.59
VPS53-217ENST00000575100 BATFQ16520 125 aa5.13□□□□□ -1.59
VPS53-217ENST00000575100 RTL8BQ17RB0 113 aa5.13□□□□□ -1.59
VPS53-217ENST00000575100 KHDC3LQ587J8 217 aa5.13□□□□□ -1.59
VPS53-217ENST00000575100 SPINK9Q5DT21 86 aa5.13□□□□□ -1.59
VPS53-217ENST00000575100 EIF5AL1Q6IS14 154 aaKnown RBP5.13□□□□□ -1.59
VPS53-217ENST00000575100 TEX43Q6ZNM6 134 aa5.13□□□□□ -1.59
VPS53-217ENST00000575100 PDPNQ86YL7 162 aa5.13□□□□□ -1.59
VPS53-217ENST00000575100 HIST3H2BBQ8N257 126 aa5.13□□□□□ -1.59
VPS53-217ENST00000575100 LSM10Q969L4 123 aaKnown RBP5.13□□□□□ -1.59
VPS53-217ENST00000575100 ACY3Q96HD9 319 aa5.13□□□□□ -1.59
VPS53-217ENST00000575100 C2orf50Q96LR7 162 aa5.13□□□□□ -1.59
VPS53-217ENST00000575100 OR5AC2Q9NZP5 309 aa5.13□□□□□ -1.59
VPS53-217ENST00000575100 A0A1B0GW64 132 aa5.12□□□□□ -1.59
VPS53-217ENST00000575100 DUXBA0A1W2PPF3 345 aa5.12□□□□□ -1.59
VPS53-217ENST00000575100 KBTBD11O94819 623 aa5.12□□□□□ -1.59
VPS53-217ENST00000575100 HES1Q14469 280 aa5.12□□□□□ -1.59
VPS53-217ENST00000575100 DEFB112Q30KQ8 113 aa5.12□□□□□ -1.59
VPS53-217ENST00000575100 C10orf55Q5SWW7 151 aa5.12□□□□□ -1.59
VPS53-217ENST00000575100 ALKAL2Q6UX46 152 aa5.12□□□□□ -1.59
VPS53-217ENST00000575100 IL34Q6ZMJ4 242 aa5.12□□□□□ -1.59
VPS53-217ENST00000575100 Q8N6K4 173 aa5.12□□□□□ -1.59
VPS53-217ENST00000575100 GNB1LQ9BYB4 327 aa5.12□□□□□ -1.59
VPS53-217ENST00000575100 NMES1Q9C002 83 aa5.12□□□□□ -1.59
VPS53-217ENST00000575100 RNASE7Q9H1E1 156 aaKnown RBP5.12□□□□□ -1.59
VPS53-217ENST00000575100 A0A0J9YXV3 536 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms