RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 C11orf21Q9P2W6 132 aa6.7□□□□□ -1.34
VPS35-211ENST00000569950 LENEPQ9Y5L5 61 aa6.7□□□□□ -1.34
VPS35-211ENST00000569950 MUC4Q99102 2169 aa6.69□□□□□ -1.34
VPS35-211ENST00000569950 LTAP01374 205 aa6.69□□□□□ -1.34
VPS35-211ENST00000569950 AMBPP02760 352 aa6.69□□□□□ -1.34
VPS35-211ENST00000569950 NHLRC4P0CG21 123 aaPredicted RBP6.69□□□□□ -1.34
VPS35-211ENST00000569950 TMEM183BQ1AE95 376 aa6.69□□□□□ -1.34
VPS35-211ENST00000569950 TOR2AQ5JU69 321 aa6.69□□□□□ -1.34
VPS35-211ENST00000569950 CLLU1Q5K131 121 aa6.69□□□□□ -1.34
VPS35-211ENST00000569950 TMEM78Q5T7P6 136 aa6.69□□□□□ -1.34
VPS35-211ENST00000569950 Q6AWC8 147 aa6.69□□□□□ -1.34
VPS35-211ENST00000569950 TXNDC17Q9BRA2 123 aa6.69□□□□□ -1.34
VPS35-211ENST00000569950 EDA2RQ9HAV5 297 aa6.69□□□□□ -1.34
VPS35-211ENST00000569950 VAX2Q9UIW0 290 aa6.69□□□□□ -1.34
VPS35-211ENST00000569950 TRAV12-3A0A0B4J271 114 aa6.68□□□□□ -1.34
VPS35-211ENST00000569950 C7orf71A4D174 169 aa6.68□□□□□ -1.34
VPS35-211ENST00000569950 F6UZH7 168 aa6.68□□□□□ -1.34
VPS35-211ENST00000569950 J3KRW8 73 aa6.68□□□□□ -1.34
VPS35-211ENST00000569950 NDUFS6O75380 124 aaKnown RBP6.68□□□□□ -1.34
VPS35-211ENST00000569950 INSP01308 110 aa6.68□□□□□ -1.34
VPS35-211ENST00000569950 SRP19P09132 144 aaKnown RBP6.68□□□□□ -1.34
VPS35-211ENST00000569950 AZU1P20160 251 aa6.68□□□□□ -1.34
VPS35-211ENST00000569950 LEPP41159 167 aa6.68□□□□□ -1.34
VPS35-211ENST00000569950 NUTF2P61970 127 aaKnown RBP6.68□□□□□ -1.34
VPS35-211ENST00000569950 PRNTQ86SH4 94 aa6.68□□□□□ -1.34
VPS35-211ENST00000569950 OR11H2Q8NH07 326 aa6.68□□□□□ -1.34
VPS35-211ENST00000569950 ZC2HC1AQ96GY0 325 aa6.68□□□□□ -1.34
VPS35-211ENST00000569950 RCHY1Q96PM5 261 aa6.68□□□□□ -1.34
VPS35-211ENST00000569950 NEU1Q99519 415 aa6.68□□□□□ -1.34
VPS35-211ENST00000569950 C1QTNF4Q9BXJ3 329 aa6.68□□□□□ -1.34
VPS35-211ENST00000569950 NACAE9PAV3 2078 aa6.67□□□□□ -1.34
VPS35-211ENST00000569950 IGHV4-28A0A0C4DH34 117 aa6.67□□□□□ -1.34
VPS35-211ENST00000569950 RAB19A4D1S5 217 aa6.67□□□□□ -1.34
VPS35-211ENST00000569950 TSPOP30536 169 aa6.67□□□□□ -1.34
VPS35-211ENST00000569950 RNASE4P34096 147 aaKnown RBP6.67□□□□□ -1.34
VPS35-211ENST00000569950 RPL35P42766 123 aaKnown RBP6.67□□□□□ -1.34
VPS35-211ENST00000569950 IL17DQ8TAD2 202 aa6.67□□□□□ -1.34
VPS35-211ENST00000569950 FMC1Q96HJ9 113 aa6.67□□□□□ -1.34
VPS35-211ENST00000569950 C20orf144Q9BQM9 153 aa6.67□□□□□ -1.34
VPS35-211ENST00000569950 LINC00467Q9BRT7 94 aa6.67□□□□□ -1.34
VPS35-211ENST00000569950 PGPEP1LA6NFU8 196 aa6.66□□□□□ -1.34
VPS35-211ENST00000569950 FBLL1A6NHQ2 334 aaKnown RBP6.66□□□□□ -1.34
VPS35-211ENST00000569950 ZNF705GA8MUZ8 300 aaPredicted RBP6.66□□□□□ -1.34
VPS35-211ENST00000569950 TMEM250H0YL14 139 aa6.66□□□□□ -1.34
VPS35-211ENST00000569950 PDE6DO43924 150 aa6.66□□□□□ -1.34
VPS35-211ENST00000569950 IFNA1P01562 189 aa6.66□□□□□ -1.34
VPS35-211ENST00000569950 GPX1P07203 203 aa6.66□□□□□ -1.34
VPS35-211ENST00000569950 TAGLN2P37802 199 aaKnown RBP6.66□□□□□ -1.34
VPS35-211ENST00000569950 AKR1C3P42330 323 aa6.66□□□□□ -1.34
VPS35-211ENST00000569950 TDRG1Q3Y452 100 aa6.66□□□□□ -1.34
VPS35-211ENST00000569950 NHLRC2Q8NBF2 726 aa6.66□□□□□ -1.34
VPS35-211ENST00000569950 C11orf72Q8NBR9 251 aa6.66□□□□□ -1.34
VPS35-211ENST00000569950 RNASE8Q8TDE3 154 aaKnown RBP6.66□□□□□ -1.34
VPS35-211ENST00000569950 C11orf68Q9H3H3 251 aaKnown RBP6.66□□□□□ -1.34
VPS35-211ENST00000569950 TREM1Q9NP99 234 aa6.66□□□□□ -1.34
VPS35-211ENST00000569950 TP53TG3Q9ULZ0 132 aa6.66□□□□□ -1.34
VPS35-211ENST00000569950 U3KQK5 164 aa6.66□□□□□ -1.34
VPS35-211ENST00000569950 H7BYZ3 331 aa6.65□□□□□ -1.34
VPS35-211ENST00000569950 DEFB4AO15263 64 aa6.65□□□□□ -1.34
VPS35-211ENST00000569950 GCGP01275 180 aa6.65□□□□□ -1.34
VPS35-211ENST00000569950 TAS2R60P59551 318 aa6.65□□□□□ -1.34
VPS35-211ENST00000569950 ZNF674Q2M3X9 581 aa6.65□□□□□ -1.34
VPS35-211ENST00000569950 CENPWQ5EE01 88 aa6.65□□□□□ -1.34
VPS35-211ENST00000569950 TMEM183AQ8IXX5 376 aa6.65□□□□□ -1.34
VPS35-211ENST00000569950 TMEM256Q8N2U0 113 aa6.65□□□□□ -1.34
VPS35-211ENST00000569950 PARLQ9H300 379 aa6.65□□□□□ -1.34
VPS35-211ENST00000569950 MED9Q9NWA0 146 aa6.65□□□□□ -1.34
VPS35-211ENST00000569950 CELA1Q9UNI1 258 aa6.65□□□□□ -1.34
VPS35-211ENST00000569950 ZFP30Q9Y2G7 519 aa6.65□□□□□ -1.34
VPS35-211ENST00000569950 PLECQ15149 4684 aaKnown RBP6.65□□□□□ -1.35
VPS35-211ENST00000569950 IGHV3OR16-12A0A075B7B8 117 aa6.64□□□□□ -1.35
VPS35-211ENST00000569950 IGKV3D-20A0A0C4DH25 116 aa6.64□□□□□ -1.35
VPS35-211ENST00000569950 A0A0J9YWU9 116 aa6.64□□□□□ -1.35
VPS35-211ENST00000569950 C9JCJ5 164 aa6.64□□□□□ -1.35
VPS35-211ENST00000569950 K7EN84 100 aa6.64□□□□□ -1.35
VPS35-211ENST00000569950 K7EQM0 130 aa6.64□□□□□ -1.35
VPS35-211ENST00000569950 MIFP14174 115 aa6.64□□□□□ -1.35
VPS35-211ENST00000569950 SAPCD1Q5SSQ6 148 aa6.64□□□□□ -1.35
VPS35-211ENST00000569950 PYGO2Q9BRQ0 406 aa6.64□□□□□ -1.35
VPS35-211ENST00000569950 ZMAT4Q9H898 229 aa6.64□□□□□ -1.35
VPS35-211ENST00000569950 GOLT1BQ9Y3E0 138 aa6.64□□□□□ -1.35
VPS35-211ENST00000569950 IGHV1OR15-1A0A075B7D0 117 aa6.63□□□□□ -1.35
VPS35-211ENST00000569950 LINC00862A6NCI5 91 aa6.63□□□□□ -1.35
VPS35-211ENST00000569950 C19orf71A6NCJ1 209 aa6.63□□□□□ -1.35
VPS35-211ENST00000569950 SMIM9A6NGZ8 99 aa6.63□□□□□ -1.35
VPS35-211ENST00000569950 SH2D1AO60880 128 aa6.63□□□□□ -1.35
VPS35-211ENST00000569950 S100A9P06702 114 aaKnown RBP6.63□□□□□ -1.35
VPS35-211ENST00000569950 PFN1P07737 140 aaKnown RBP6.63□□□□□ -1.35
VPS35-211ENST00000569950 UBE2G1P62253 170 aa6.63□□□□□ -1.35
VPS35-211ENST00000569950 ANXA2RQ3ZCQ2 193 aa6.63□□□□□ -1.35
VPS35-211ENST00000569950 SMUG1Q53HV7 270 aa6.63□□□□□ -1.35
VPS35-211ENST00000569950 MUC21Q5SSG8 566 aa6.63□□□□□ -1.35
VPS35-211ENST00000569950 BAGE2Q86Y30 109 aa6.63□□□□□ -1.35
VPS35-211ENST00000569950 LINC00612Q8N6U2 182 aa6.63□□□□□ -1.35
VPS35-211ENST00000569950 OCC1Q8TAD7 63 aa6.63□□□□□ -1.35
VPS35-211ENST00000569950 LINC01587Q99440 93 aa6.63□□□□□ -1.35
VPS35-211ENST00000569950 EIF5A2Q9GZV4 153 aaKnown RBP6.63□□□□□ -1.35
VPS35-211ENST00000569950 TRAV21A0A0B4J279 112 aa6.62□□□□□ -1.35
VPS35-211ENST00000569950 GNRH2O43555 120 aa6.62□□□□□ -1.35
VPS35-211ENST00000569950 TYMSP04818 313 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms