RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 DAZAP1Q96EP5 407 aaKnown RBP22.66■■□□□ 1.22
CTCF-203ENST00000566078 NUDT11Q96G61 164 aa22.66■■□□□ 1.22
CTCF-203ENST00000566078 BTN1A1Q13410 526 aa22.65■■□□□ 1.22
CTCF-203ENST00000566078 FAM162BQ5T6X4 162 aa22.65■■□□□ 1.22
CTCF-203ENST00000566078 TRBV7-9A0A0J9YWB2 115 aa22.64■■□□□ 1.22
CTCF-203ENST00000566078 J3KRW8 73 aa22.64■■□□□ 1.22
CTCF-203ENST00000566078 ZFAND2AQ8N6M9 145 aa22.64■■□□□ 1.22
CTCF-203ENST00000566078 ODF3Q96PU9 254 aa22.64■■□□□ 1.22
CTCF-203ENST00000566078 TMEM242Q9NWH2 141 aa22.64■■□□□ 1.22
CTCF-203ENST00000566078 V9GYV3 84 aa22.64■■□□□ 1.22
CTCF-203ENST00000566078 ZNF705GA8MUZ8 300 aaPredicted RBP22.64■■□□□ 1.21
CTCF-203ENST00000566078 H3BMM0 161 aa22.64■■□□□ 1.21
CTCF-203ENST00000566078 GATCO43716 136 aaKnown RBP22.64■■□□□ 1.21
CTCF-203ENST00000566078 SH2D1AO60880 128 aa22.64■■□□□ 1.21
CTCF-203ENST00000566078 P01737 135 aa22.64■■□□□ 1.21
CTCF-203ENST00000566078 PRR9Q5T870 116 aa22.64■■□□□ 1.21
CTCF-203ENST00000566078 SMCO4Q9NRQ5 59 aa22.64■■□□□ 1.21
CTCF-203ENST00000566078 CRISP2P16562 243 aa22.63■■□□□ 1.21
CTCF-203ENST00000566078 FAM110AQ9BQ89 295 aa22.63■■□□□ 1.21
CTCF-203ENST00000566078 WIPF1O43516 503 aa22.62■■□□□ 1.21
CTCF-203ENST00000566078 LEPP41159 167 aa22.61■■□□□ 1.21
CTCF-203ENST00000566078 A8MTW9 85 aa22.6■■□□□ 1.21
CTCF-203ENST00000566078 GPX1P07203 203 aa22.6■■□□□ 1.21
CTCF-203ENST00000566078 PRR31Q5SQ13 230 aa22.6■■□□□ 1.21
CTCF-203ENST00000566078 WFDC10AQ9H1F0 79 aa22.6■■□□□ 1.21
CTCF-203ENST00000566078 RPP21Q9H633 154 aaKnown RBP22.6■■□□□ 1.21
CTCF-203ENST00000566078 C19orf73Q9NVV2 129 aa22.6■■□□□ 1.21
CTCF-203ENST00000566078 AMTNQ6UX39 209 aa22.6■■□□□ 1.21
CTCF-203ENST00000566078 GTSCR1Q86UQ5 136 aa22.59■■□□□ 1.21
CTCF-203ENST00000566078 RBMY1BA6NDE4 496 aaKnown RBP22.58■■□□□ 1.21
CTCF-203ENST00000566078 CXorf65A6NEN9 183 aa22.58■■□□□ 1.21
CTCF-203ENST00000566078 RBMY1EA6NEQ0 496 aaKnown RBP22.58■■□□□ 1.21
CTCF-203ENST00000566078 FABP5P3A8MUU1 101 aa22.58■■□□□ 1.21
CTCF-203ENST00000566078 CA1P00915 261 aaPredicted RBP22.58■■□□□ 1.21
CTCF-203ENST00000566078 PFN1P07737 140 aaKnown RBP22.58■■□□□ 1.21
CTCF-203ENST00000566078 RBMY1DP0C7P1 496 aaKnown RBP22.58■■□□□ 1.21
CTCF-203ENST00000566078 KIR3DS1Q14943 382 aa22.58■■□□□ 1.21
CTCF-203ENST00000566078 STHQ8IWL8 128 aa22.58■■□□□ 1.21
CTCF-203ENST00000566078 PKD1L1Q8TDX9 2849 aa22.58■■□□□ 1.2
CTCF-203ENST00000566078 KLLNB2CW77 178 aa22.57■■□□□ 1.2
CTCF-203ENST00000566078 M0R2Z0 102 aa22.57■■□□□ 1.2
CTCF-203ENST00000566078 RNASE4P34096 147 aaKnown RBP22.57■■□□□ 1.2
CTCF-203ENST00000566078 SPINK13Q1W4C9 94 aa22.57■■□□□ 1.2
CTCF-203ENST00000566078 URGCP-MRPS24S4R325 110 aa22.57■■□□□ 1.2
CTCF-203ENST00000566078 TSPOP30536 169 aa22.57■■□□□ 1.2
CTCF-203ENST00000566078 CDKN1BP46527 198 aa22.56■■□□□ 1.2
CTCF-203ENST00000566078 RPL19P84098 196 aaKnown RBP22.56■■□□□ 1.2
CTCF-203ENST00000566078 OR2D3Q8NGH3 330 aa22.56■■□□□ 1.2
CTCF-203ENST00000566078 TUBA4BQ9H853 241 aa22.56■■□□□ 1.2
CTCF-203ENST00000566078 IL36BQ9NZH7 164 aa22.56■■□□□ 1.2
CTCF-203ENST00000566078 FXYD7P58549 80 aa22.55■■□□□ 1.2
CTCF-203ENST00000566078 OXLD1Q5BKU9 147 aa22.54■■□□□ 1.2
CTCF-203ENST00000566078 CT83Q5H943 113 aa22.54■■□□□ 1.2
CTCF-203ENST00000566078 Q6ZQT7 251 aa22.54■■□□□ 1.2
CTCF-203ENST00000566078 TRPT1Q86TN4 253 aaKnown RBP22.54■■□□□ 1.2
CTCF-203ENST00000566078 TRAV12-2A0A075B6T6 113 aa22.53■■□□□ 1.2
CTCF-203ENST00000566078 CLUHP3Q96NS8 147 aa22.53■■□□□ 1.2
CTCF-203ENST00000566078 TRAV21A0A0B4J279 112 aa22.53■■□□□ 1.2
CTCF-203ENST00000566078 S100PP25815 95 aa22.53■■□□□ 1.2
CTCF-203ENST00000566078 GFI1BQ5VTD9 330 aa22.53■■□□□ 1.2
CTCF-203ENST00000566078 Q6AWC8 147 aa22.53■■□□□ 1.2
CTCF-203ENST00000566078 IMMP2LQ96T52 175 aa22.53■■□□□ 1.2
CTCF-203ENST00000566078 C7orf71A4D174 169 aa22.52■■□□□ 1.2
CTCF-203ENST00000566078 TMEM189A5PLL7 270 aa22.52■■□□□ 1.2
CTCF-203ENST00000566078 ORM1P02763 201 aa22.52■■□□□ 1.2
CTCF-203ENST00000566078 KCNIP4Q6PIL6 250 aa22.52■■□□□ 1.2
CTCF-203ENST00000566078 TMSB15BA0A087X1C1 80 aa22.51■■□□□ 1.19
CTCF-203ENST00000566078 TCL1AP56279 114 aa22.51■■□□□ 1.19
CTCF-203ENST00000566078 DEFB125Q8N687 156 aa22.51■■□□□ 1.19
CTCF-203ENST00000566078 SREK1IP1Q8N9Q2 155 aaPredicted RBP22.51■■□□□ 1.19
CTCF-203ENST00000566078 A8MWL6 223 aa22.5■■□□□ 1.19
CTCF-203ENST00000566078 RIPPLY3P57055 190 aa22.5■■□□□ 1.19
CTCF-203ENST00000566078 FAM3BP58499 235 aaPredicted RBP22.5■■□□□ 1.19
CTCF-203ENST00000566078 ELOBQ15370 118 aa22.5■■□□□ 1.19
CTCF-203ENST00000566078 TSKUQ8WUA8 353 aa22.5■■□□□ 1.19
CTCF-203ENST00000566078 YPEL4Q96NS1 127 aa22.5■■□□□ 1.19
CTCF-203ENST00000566078 C11orf21Q9P2W6 132 aa22.5■■□□□ 1.19
CTCF-203ENST00000566078 TRAV12-3A0A0B4J271 114 aa22.49■■□□□ 1.19
CTCF-203ENST00000566078 LINC01559Q495D7 138 aa22.49■■□□□ 1.19
CTCF-203ENST00000566078 SMIM27A0A1W2PRY6 76 aa22.49■■□□□ 1.19
CTCF-203ENST00000566078 GZMBP10144 247 aa22.49■■□□□ 1.19
CTCF-203ENST00000566078 NAGKQ9UJ70 344 aa22.49■■□□□ 1.19
CTCF-203ENST00000566078 A0A1W2PPQ1 181 aa22.47■■□□□ 1.19
CTCF-203ENST00000566078 NEU1Q99519 415 aa22.47■■□□□ 1.19
CTCF-203ENST00000566078 TGIF2-C20orf24A0A0A6YYL0 155 aa22.46■■□□□ 1.19
CTCF-203ENST00000566078 IGKV3D-20A0A0C4DH25 116 aa22.46■■□□□ 1.19
CTCF-203ENST00000566078 CRXO43186 299 aaPredicted RBP22.46■■□□□ 1.19
CTCF-203ENST00000566078 RPS20P60866 119 aaKnown RBP22.46■■□□□ 1.19
CTCF-203ENST00000566078 XKRY2A2RUG3 117 aa22.45■■□□□ 1.18
CTCF-203ENST00000566078 RPL35AP18077 110 aaKnown RBP22.45■■□□□ 1.18
CTCF-203ENST00000566078 GTSF1Q8WW33 167 aa22.45■■□□□ 1.18
CTCF-203ENST00000566078 GFRA4Q9GZZ7 299 aa22.45■■□□□ 1.18
CTCF-203ENST00000566078 ZNF324O75467 553 aaPredicted RBP22.44■■□□□ 1.18
CTCF-203ENST00000566078 CXCL1P09341 107 aa22.44■■□□□ 1.18
CTCF-203ENST00000566078 MUC21Q5SSG8 566 aa22.44■■□□□ 1.18
CTCF-203ENST00000566078 NAT8BQ9UHF3 227 aa22.44■■□□□ 1.18
CTCF-203ENST00000566078 COLCA2A8K830 154 aa22.43■■□□□ 1.18
CTCF-203ENST00000566078 HIGD1CA8MV81 97 aa22.43■■□□□ 1.18
CTCF-203ENST00000566078 NUTF2P61970 127 aaKnown RBP22.43■■□□□ 1.18
CTCF-203ENST00000566078 Q8N1Y9 231 aa22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms