RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 NMES1Q9C002 83 aa10.77□□□□□ -0.69
CLK3-211ENST00000563297 SCRT2Q9NQ03 307 aa10.77□□□□□ -0.69
CLK3-211ENST00000563297 HHLA3Q9XRX5 114 aa10.77□□□□□ -0.69
CLK3-211ENST00000563297 TRBV7-9A0A0J9YWB2 115 aa10.76□□□□□ -0.69
CLK3-211ENST00000563297 PRAF2O60831 178 aa10.76□□□□□ -0.69
CLK3-211ENST00000563297 NXPH4O95158 308 aa10.76□□□□□ -0.69
CLK3-211ENST00000563297 LRRC37A5PQ49AS3 106 aa10.76□□□□□ -0.69
CLK3-211ENST00000563297 LYPD5Q6UWN5 251 aa10.76□□□□□ -0.69
CLK3-211ENST00000563297 LINC00299Q6ZSB3 139 aa10.76□□□□□ -0.69
CLK3-211ENST00000563297 Q8TAT8 98 aa10.76□□□□□ -0.69
CLK3-211ENST00000563297 ARPC5LQ9BPX5 153 aa10.76□□□□□ -0.69
CLK3-211ENST00000563297 RBAKDNA6NC62 111 aa10.75□□□□□ -0.69
CLK3-211ENST00000563297 RANP62826 216 aaKnown RBP10.75□□□□□ -0.69
CLK3-211ENST00000563297 C8orf49Q96NF6 230 aa10.75□□□□□ -0.69
CLK3-211ENST00000563297 MDFICQ9P1T7 246 aa10.75□□□□□ -0.69
CLK3-211ENST00000563297 TNFRSF18Q9Y5U5 241 aa10.75□□□□□ -0.69
CLK3-211ENST00000563297 OR7C2O60412 319 aa10.74□□□□□ -0.69
CLK3-211ENST00000563297 CSN1S1P47710 185 aa10.74□□□□□ -0.69
CLK3-211ENST00000563297 CYCSP99999 105 aaKnown RBP10.74□□□□□ -0.69
CLK3-211ENST00000563297 ZNF415Q09FC8 603 aa10.74□□□□□ -0.69
CLK3-211ENST00000563297 ZNF266Q14584 549 aa10.74□□□□□ -0.69
CLK3-211ENST00000563297 MRPL23Q16540 153 aaKnown RBP10.74□□□□□ -0.69
CLK3-211ENST00000563297 MUC21Q5SSG8 566 aa10.74□□□□□ -0.69
CLK3-211ENST00000563297 LYPD1Q8N2G4 141 aa10.74□□□□□ -0.69
CLK3-211ENST00000563297 S100ZQ8WXG8 99 aa10.74□□□□□ -0.69
CLK3-211ENST00000563297 KCNIP2Q9NS61 270 aa10.74□□□□□ -0.69
CLK3-211ENST00000563297 C17orf112F2Z3M2 114 aa10.73□□□□□ -0.69
CLK3-211ENST00000563297 NEGR1Q7Z3B1 354 aa10.73□□□□□ -0.69
CLK3-211ENST00000563297 IQCF2Q8IXL9 164 aa10.73□□□□□ -0.69
CLK3-211ENST00000563297 ENKURQ8TC29 256 aa10.73□□□□□ -0.69
CLK3-211ENST00000563297 PGPEP1Q9NXJ5 209 aa10.73□□□□□ -0.69
CLK3-211ENST00000563297 SFTA3P0C7M3 94 aa10.72□□□□□ -0.69
CLK3-211ENST00000563297 Q6AWC8 147 aa10.72□□□□□ -0.69
CLK3-211ENST00000563297 ZNF479Q96JC4 524 aa10.72□□□□□ -0.69
CLK3-211ENST00000563297 LENEPQ9Y5L5 61 aa10.72□□□□□ -0.69
CLK3-211ENST00000563297 TRGV4A0A0C4DH28 118 aa10.71□□□□□ -0.69
CLK3-211ENST00000563297 DIRC3C9JPN6 131 aa10.71□□□□□ -0.69
CLK3-211ENST00000563297 UPK1BO75841 260 aa10.71□□□□□ -0.69
CLK3-211ENST00000563297 FUSP35637 526 aaKnown RBP eCLIP10.71□□□□□ -0.69
CLK3-211ENST00000563297 H2BFSP57053 126 aa10.71□□□□□ -0.69
CLK3-211ENST00000563297 IFITM3Q01628 133 aa10.71□□□□□ -0.69
CLK3-211ENST00000563297 FFAR4Q5NUL3 377 aa10.71□□□□□ -0.69
CLK3-211ENST00000563297 OR10G4Q8NGN3 311 aa10.71□□□□□ -0.69
CLK3-211ENST00000563297 PPP1R1CQ8WVI7 109 aa10.71□□□□□ -0.69
CLK3-211ENST00000563297 RASL10AQ92737 203 aa10.71□□□□□ -0.69
CLK3-211ENST00000563297 ATP5SQ99766 215 aa10.71□□□□□ -0.69
CLK3-211ENST00000563297 INMT-MINDY4F8WBC2 141 aa10.7□□□□□ -0.7
CLK3-211ENST00000563297 K7EQD1 137 aa10.7□□□□□ -0.7
CLK3-211ENST00000563297 UBE2L3P68036 154 aaKnown RBP10.7□□□□□ -0.7
CLK3-211ENST00000563297 TMEM183BQ1AE95 376 aa10.7□□□□□ -0.7
CLK3-211ENST00000563297 FAM159AQ6UWV7 190 aa10.7□□□□□ -0.7
CLK3-211ENST00000563297 TMEM183AQ8IXX5 376 aa10.7□□□□□ -0.7
CLK3-211ENST00000563297 SPXQ9BT56 116 aa10.7□□□□□ -0.7
CLK3-211ENST00000563297 EIF3GO75821 320 aaKnown RBP eCLIP10.69□□□□□ -0.7
CLK3-211ENST00000563297 NFE4Q86UQ8 179 aa10.69□□□□□ -0.7
CLK3-211ENST00000563297 HYLS1Q96M11 299 aa10.69□□□□□ -0.7
CLK3-211ENST00000563297 HSPB11Q9Y547 144 aa10.69□□□□□ -0.7
CLK3-211ENST00000563297 TRGV11A0A075B6L2 103 aa10.68□□□□□ -0.7
CLK3-211ENST00000563297 TRAV9-2A0A087WT02 112 aa10.68□□□□□ -0.7
CLK3-211ENST00000563297 PGPA6NDG6 321 aa10.68□□□□□ -0.7
CLK3-211ENST00000563297 EREGO14944 169 aa10.68□□□□□ -0.7
CLK3-211ENST00000563297 GNRH2O43555 120 aa10.68□□□□□ -0.7
CLK3-211ENST00000563297 MPC2O95563 127 aa10.68□□□□□ -0.7
CLK3-211ENST00000563297 GYPEP15421 78 aa10.68□□□□□ -0.7
CLK3-211ENST00000563297 SRIP30626 198 aa10.68□□□□□ -0.7
CLK3-211ENST00000563297 TAS2R45P59539 299 aa10.68□□□□□ -0.7
CLK3-211ENST00000563297 ERVFC1-1P60608 527 aa10.68□□□□□ -0.7
CLK3-211ENST00000563297 TDRG1Q3Y452 100 aa10.68□□□□□ -0.7
CLK3-211ENST00000563297 KHDC3LQ587J8 217 aa10.68□□□□□ -0.7
CLK3-211ENST00000563297 SCGB1C1Q8TD33 95 aa10.68□□□□□ -0.7
CLK3-211ENST00000563297 TMED6Q8WW62 240 aa10.68□□□□□ -0.7
CLK3-211ENST00000563297 MARVELD1Q9BSK0 173 aa10.68□□□□□ -0.7
CLK3-211ENST00000563297 SMIM3Q9BZL3 60 aa10.68□□□□□ -0.7
CLK3-211ENST00000563297 LY96Q9Y6Y9 160 aa10.68□□□□□ -0.7
CLK3-211ENST00000563297 IFNA5P01569 189 aa10.67□□□□□ -0.7
CLK3-211ENST00000563297 RPL12P30050 165 aaKnown RBP10.67□□□□□ -0.7
CLK3-211ENST00000563297 XGP55808 180 aa10.67□□□□□ -0.7
CLK3-211ENST00000563297 WFDC10BQ8IUB3 73 aa10.67□□□□□ -0.7
CLK3-211ENST00000563297 OTORQ9NRC9 128 aa10.67□□□□□ -0.7
CLK3-211ENST00000563297 MBD2Q9UBB5 411 aa10.67□□□□□ -0.7
CLK3-211ENST00000563297 A0A087WTM6 91 aa10.66□□□□□ -0.7
CLK3-211ENST00000563297 K7EP13 123 aa10.66□□□□□ -0.7
CLK3-211ENST00000563297 ORM1P02763 201 aa10.66□□□□□ -0.7
CLK3-211ENST00000563297 DNAH10OSP0CZ25 163 aa10.66□□□□□ -0.7
CLK3-211ENST00000563297 CDPF1Q6NVV7 123 aa10.66□□□□□ -0.7
CLK3-211ENST00000563297 TVP23CQ96ET8 276 aa10.66□□□□□ -0.7
CLK3-211ENST00000563297 WFDC1Q9HC57 220 aa10.66□□□□□ -0.7
CLK3-211ENST00000563297 TRAV4A0A0B4J268 109 aa10.65□□□□□ -0.7
CLK3-211ENST00000563297 IGHV3-16A0A0C4DH30 117 aa10.65□□□□□ -0.7
CLK3-211ENST00000563297 GOLT1AQ6ZVE7 132 aa10.65□□□□□ -0.7
CLK3-211ENST00000563297 ARL6IP6Q8N6S5 226 aa10.65□□□□□ -0.7
CLK3-211ENST00000563297 OR4C5Q8NGB2 326 aa10.65□□□□□ -0.7
CLK3-211ENST00000563297 CMTM2Q8TAZ6 248 aa10.65□□□□□ -0.7
CLK3-211ENST00000563297 PCNPQ8WW12 178 aaKnown RBP10.65□□□□□ -0.7
CLK3-211ENST00000563297 MSRB1Q9NZV6 116 aa10.65□□□□□ -0.7
CLK3-211ENST00000563297 NAGKQ9UJ70 344 aa10.65□□□□□ -0.7
CLK3-211ENST00000563297 RPH3ALQ9UNE2 315 aa10.65□□□□□ -0.7
CLK3-211ENST00000563297 LOC100131303A0A0U1RQF7 123 aa10.64□□□□□ -0.71
CLK3-211ENST00000563297 EPM2AB3EWF7 344 aa10.64□□□□□ -0.71
CLK3-211ENST00000563297 M0R2P5 195 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 186.4 ms