RNA–Protein interactions for RNA: ENST00000560447.1

RTF1-206, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-206ENST00000560447 TPPP3Q9BW30 176 aa7.4□□□□□ -1.22
RTF1-206ENST00000560447 SNHG12Q9BXW3 62 aa7.4□□□□□ -1.22
RTF1-206ENST00000560447 PEF1Q9UBV8 284 aaKnown RBP7.4□□□□□ -1.22
RTF1-206ENST00000560447 UFC1Q9Y3C8 167 aa7.4□□□□□ -1.22
RTF1-206ENST00000560447 MRPS16Q9Y3D3 137 aaKnown RBP7.4□□□□□ -1.22
RTF1-206ENST00000560447 IGHV3OR16-8A0A075B7F1 116 aa7.39□□□□□ -1.23
RTF1-206ENST00000560447 TMSB15BA0A087X1C1 80 aa7.39□□□□□ -1.23
RTF1-206ENST00000560447 TRAV21A0A0B4J279 112 aa7.39□□□□□ -1.23
RTF1-206ENST00000560447 TMEM213A2RRL7 107 aa7.39□□□□□ -1.23
RTF1-206ENST00000560447 OR4C46A6NHA9 309 aa7.39□□□□□ -1.23
RTF1-206ENST00000560447 PRSS47A8MTI9 375 aa7.39□□□□□ -1.23
RTF1-206ENST00000560447 HSBP1L1C9JCN9 74 aa7.39□□□□□ -1.23
RTF1-206ENST00000560447 TCF21O43680 179 aa7.39□□□□□ -1.23
RTF1-206ENST00000560447 ELANEP08246 267 aa7.39□□□□□ -1.23
RTF1-206ENST00000560447 RNF224P0DH78 156 aa7.39□□□□□ -1.23
RTF1-206ENST00000560447 PSMB8P28062 276 aa7.39□□□□□ -1.23
RTF1-206ENST00000560447 ID1P41134 155 aa7.39□□□□□ -1.23
RTF1-206ENST00000560447 NUTF2P61970 127 aaKnown RBP7.39□□□□□ -1.23
RTF1-206ENST00000560447 LINC01545Q5VT33 79 aa7.39□□□□□ -1.23
RTF1-206ENST00000560447 IGFL4Q6B9Z1 124 aa7.39□□□□□ -1.23
RTF1-206ENST00000560447 PRSS57Q6UWY2 283 aa7.39□□□□□ -1.23
RTF1-206ENST00000560447 ZNF575Q86XF7 245 aa7.39□□□□□ -1.23
RTF1-206ENST00000560447 ZNF843Q8N446 348 aa7.39□□□□□ -1.23
RTF1-206ENST00000560447 ZNF738Q8NE65 137 aa7.39□□□□□ -1.23
RTF1-206ENST00000560447 MAP1LC3AQ9H492 121 aa7.39□□□□□ -1.23
RTF1-206ENST00000560447 NXT2Q9NPJ8 142 aaKnown RBP7.39□□□□□ -1.23
RTF1-206ENST00000560447 SMPXQ9UHP9 88 aa7.39□□□□□ -1.23
RTF1-206ENST00000560447 IGKV3D-20A0A0C4DH25 116 aa7.38□□□□□ -1.23
RTF1-206ENST00000560447 IGHV3-66A0A0C4DH42 116 aa7.38□□□□□ -1.23
RTF1-206ENST00000560447 EREGO14944 169 aa7.38□□□□□ -1.23
RTF1-206ENST00000560447 SMAD7O15105 426 aaKnown RBP7.38□□□□□ -1.23
RTF1-206ENST00000560447 HBDP02042 147 aa7.38□□□□□ -1.23
RTF1-206ENST00000560447 BLCAPP62952 87 aa7.38□□□□□ -1.23
RTF1-206ENST00000560447 DEFB112Q30KQ8 113 aa7.38□□□□□ -1.23
RTF1-206ENST00000560447 UNQ9165/PRO28630Q6UXU0 137 aa7.38□□□□□ -1.23
RTF1-206ENST00000560447 AMN1Q8IY45 258 aa7.38□□□□□ -1.23
RTF1-206ENST00000560447 LINC00469Q8N7U9 141 aa7.38□□□□□ -1.23
RTF1-206ENST00000560447 MYOZ3Q8TDC0 251 aa7.38□□□□□ -1.23
RTF1-206ENST00000560447 FAM19A4Q96LR4 140 aa7.38□□□□□ -1.23
RTF1-206ENST00000560447 ODF3Q96PU9 254 aa7.38□□□□□ -1.23
RTF1-206ENST00000560447 ZNF747Q9BV97 191 aa7.38□□□□□ -1.23
RTF1-206ENST00000560447 SIGLEC8Q9NYZ4 499 aa7.38□□□□□ -1.23
RTF1-206ENST00000560447 LINC00527Q9UJ94 153 aa7.38□□□□□ -1.23
RTF1-206ENST00000560447 VPREB3Q9UKI3 123 aa7.38□□□□□ -1.23
RTF1-206ENST00000560447 IGSF10Q6WRI0 2623 aa7.37□□□□□ -1.23
RTF1-206ENST00000560447 RELNP78509 3460 aa7.37□□□□□ -1.23
RTF1-206ENST00000560447 ZNF207O43670 478 aaKnown RBP7.37□□□□□ -1.23
RTF1-206ENST00000560447 HNRNPA3P51991 378 aaKnown RBP7.37□□□□□ -1.23
RTF1-206ENST00000560447 LGALS9BQ3B8N2 356 aa7.37□□□□□ -1.23
RTF1-206ENST00000560447 LGALS9CQ6DKI2 356 aa7.37□□□□□ -1.23
RTF1-206ENST00000560447 Q6YL49 198 aa7.37□□□□□ -1.23
RTF1-206ENST00000560447 RNF152Q8N8N0 203 aa7.37□□□□□ -1.23
RTF1-206ENST00000560447 MRAP2Q96G30 205 aa7.37□□□□□ -1.23
RTF1-206ENST00000560447 RNF185Q96GF1 192 aa7.37□□□□□ -1.23
RTF1-206ENST00000560447 PMCHL2Q9BQD1 86 aa7.37□□□□□ -1.23
RTF1-206ENST00000560447 RHPN1-AS1Q9BWJ2 59 aa7.37□□□□□ -1.23
RTF1-206ENST00000560447 KLK15Q9H2R5 256 aa7.37□□□□□ -1.23
RTF1-206ENST00000560447 MED13LQ71F56 2210 aa7.37□□□□□ -1.23
RTF1-206ENST00000560447 PRRC2AP48634 2157 aaKnown RBP7.36□□□□□ -1.23
RTF1-206ENST00000560447 IGHV3OR16-13A0A075B7E8 117 aa7.36□□□□□ -1.23
RTF1-206ENST00000560447 IGHV3-74A0A0B4J1X5 117 aa7.36□□□□□ -1.23
RTF1-206ENST00000560447 K7EMI3 77 aa7.36□□□□□ -1.23
RTF1-206ENST00000560447 M0QZ24 198 aa7.36□□□□□ -1.23
RTF1-206ENST00000560447 LGALS9O00182 355 aa7.36□□□□□ -1.23
RTF1-206ENST00000560447 TGFAP01135 160 aa7.36□□□□□ -1.23
RTF1-206ENST00000560447 TRBV12-3P01733 135 aa7.36□□□□□ -1.23
RTF1-206ENST00000560447 RPLP1P05386 114 aaKnown RBP7.36□□□□□ -1.23
RTF1-206ENST00000560447 CSN3P07498 182 aa7.36□□□□□ -1.23
RTF1-206ENST00000560447 IFI27P40305 119 aaPredicted RBP7.36□□□□□ -1.23
RTF1-206ENST00000560447 DEFB113Q30KQ7 82 aa7.36□□□□□ -1.23
RTF1-206ENST00000560447 Q6ZN92 141 aa7.36□□□□□ -1.23
RTF1-206ENST00000560447 ZFAND2AQ8N6M9 145 aa7.36□□□□□ -1.23
RTF1-206ENST00000560447 OR8A1Q8NGG7 326 aa7.36□□□□□ -1.23
RTF1-206ENST00000560447 CFAP46Q8IYW2 2715 aa7.36□□□□□ -1.23
RTF1-206ENST00000560447 AKAP6Q13023 2319 aa7.35□□□□□ -1.23
RTF1-206ENST00000560447 IGHV3-49A0A0A0MS15 119 aa7.35□□□□□ -1.23
RTF1-206ENST00000560447 A0A1B0GV90 55 aa7.35□□□□□ -1.23
RTF1-206ENST00000560447 PPP1R17O96001 155 aa7.35□□□□□ -1.23
RTF1-206ENST00000560447 NPYP01303 97 aa7.35□□□□□ -1.23
RTF1-206ENST00000560447 IGHV3-11P01762 117 aa7.35□□□□□ -1.23
RTF1-206ENST00000560447 IGHV4-59P01825 116 aa7.35□□□□□ -1.23
RTF1-206ENST00000560447 LGALS1P09382 135 aaKnown RBP7.35□□□□□ -1.23
RTF1-206ENST00000560447 IGHV4-31P0DP07 118 aa7.35□□□□□ -1.23
RTF1-206ENST00000560447 IGLL1P15814 213 aa7.35□□□□□ -1.23
RTF1-206ENST00000560447 TSPOP30536 169 aa7.35□□□□□ -1.23
RTF1-206ENST00000560447 COL5A1-AS1Q5SY13 56 aa7.35□□□□□ -1.23
RTF1-206ENST00000560447 TMEM86BQ8N661 226 aa7.35□□□□□ -1.23
RTF1-206ENST00000560447 Q8N8P6 123 aa7.35□□□□□ -1.23
RTF1-206ENST00000560447 OR1N2Q8NGR9 330 aa7.35□□□□□ -1.23
RTF1-206ENST00000560447 C20orf173Q96LM9 149 aa7.35□□□□□ -1.23
RTF1-206ENST00000560447 KRTAP9-2Q9BYQ4 174 aa7.35□□□□□ -1.23
RTF1-206ENST00000560447 C11orf21Q9P2W6 132 aa7.35□□□□□ -1.23
RTF1-206ENST00000560447 CR1P17927 2039 aa7.34□□□□□ -1.23
RTF1-206ENST00000560447 A0A096LNJ9 63 aa7.34□□□□□ -1.23
RTF1-206ENST00000560447 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.34□□□□□ -1.23
RTF1-206ENST00000560447 M0R381 172 aa7.34□□□□□ -1.23
RTF1-206ENST00000560447 TNFRSF6BO95407 300 aa7.34□□□□□ -1.23
RTF1-206ENST00000560447 FCER1GP30273 86 aa7.34□□□□□ -1.23
RTF1-206ENST00000560447 ASIPP42127 132 aa7.34□□□□□ -1.23
RTF1-206ENST00000560447 SRSF1Q07955 248 aaKnown RBP eCLIP7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms