RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 EGR2P11161 476 aaPredicted RBP13.89□□□□□ -0.19
SYNE3-204ENST00000555759 ZNF491Q8N8L2 437 aa13.89□□□□□ -0.19
SYNE3-204ENST00000555759 DPH3Q96FX2 82 aa13.89□□□□□ -0.19
SYNE3-204ENST00000555759 TMEM219Q86XT9 240 aa13.89□□□□□ -0.19
SYNE3-204ENST00000555759 MRPL53Q96EL3 112 aaKnown RBP13.89□□□□□ -0.19
SYNE3-204ENST00000555759 PROK2Q9HC23 129 aa13.89□□□□□ -0.19
SYNE3-204ENST00000555759 LENEPQ9Y5L5 61 aa13.89□□□□□ -0.19
SYNE3-204ENST00000555759 DOCK9Q9BZ29 2069 aa13.89□□□□□ -0.19
SYNE3-204ENST00000555759 HERVK_113P63121 156 aa13.89□□□□□ -0.19
SYNE3-204ENST00000555759 DENND4AQ7Z401 1863 aa13.89□□□□□ -0.19
SYNE3-204ENST00000555759 SPTA1P02549 2419 aa13.89□□□□□ -0.19
SYNE3-204ENST00000555759 IGHV1OR15-1A0A075B7D0 117 aa13.88□□□□□ -0.19
SYNE3-204ENST00000555759 SPATA12Q7Z6I5 190 aa13.88□□□□□ -0.19
SYNE3-204ENST00000555759 C8orf31Q8N9H6 132 aa13.88□□□□□ -0.19
SYNE3-204ENST00000555759 TRAV12-1A0A0B4J245 112 aa13.88□□□□□ -0.19
SYNE3-204ENST00000555759 CR1LQ2VPA4 569 aa13.88□□□□□ -0.19
SYNE3-204ENST00000555759 PLXNA2O75051 1894 aa13.88□□□□□ -0.19
SYNE3-204ENST00000555759 HAMPP81172 84 aa13.87□□□□□ -0.19
SYNE3-204ENST00000555759 BAALC-AS2P0C853 105 aa13.87□□□□□ -0.19
SYNE3-204ENST00000555759 LINC01620Q4KN68 170 aa13.87□□□□□ -0.19
SYNE3-204ENST00000555759 C2orf70A6NJV1 201 aa13.86□□□□□ -0.19
SYNE3-204ENST00000555759 GP9P14770 177 aa13.86□□□□□ -0.19
SYNE3-204ENST00000555759 HTN3P15516 51 aa13.86□□□□□ -0.19
SYNE3-204ENST00000555759 A0A0B4J2C4 111 aa13.86□□□□□ -0.19
SYNE3-204ENST00000555759 INS-IGF2F8WCM5 200 aa13.86□□□□□ -0.19
SYNE3-204ENST00000555759 OVOL3O00110 214 aa13.86□□□□□ -0.19
SYNE3-204ENST00000555759 RLFQ13129 1914 aa13.85□□□□□ -0.19
SYNE3-204ENST00000555759 ZNF503-AS2A6NEH8 195 aa13.85□□□□□ -0.19
SYNE3-204ENST00000555759 RBX1P62877 108 aa13.85□□□□□ -0.19
SYNE3-204ENST00000555759 MRAPQ8TCY5 172 aa13.85□□□□□ -0.19
SYNE3-204ENST00000555759 YPEL4Q96NS1 127 aa13.85□□□□□ -0.19
SYNE3-204ENST00000555759 TPSG1Q9NRR2 321 aa13.85□□□□□ -0.19
SYNE3-204ENST00000555759 F8WEM9 126 aa13.85□□□□□ -0.19
SYNE3-204ENST00000555759 NDUFA4O00483 81 aa13.85□□□□□ -0.19
SYNE3-204ENST00000555759 ATP6V0E1O15342 81 aa13.84□□□□□ -0.19
SYNE3-204ENST00000555759 RBM3P98179 157 aaKnown RBP13.84□□□□□ -0.19
SYNE3-204ENST00000555759 CD59P13987 128 aa13.84□□□□□ -0.19
SYNE3-204ENST00000555759 KRTAP27-1Q3LI81 207 aa13.84□□□□□ -0.19
SYNE3-204ENST00000555759 LOXP28300 417 aaPredicted RBP13.84□□□□□ -0.19
SYNE3-204ENST00000555759 GTSF1Q8WW33 167 aa13.84□□□□□ -0.19
SYNE3-204ENST00000555759 APC2O95996 2303 aa13.84□□□□□ -0.19
SYNE3-204ENST00000555759 IGHV3-53P01767 116 aa13.84□□□□□ -0.19
SYNE3-204ENST00000555759 TCF20Q9UGU0 1960 aaKnown RBP13.83□□□□□ -0.2
SYNE3-204ENST00000555759 H3BUX3 64 aa13.83□□□□□ -0.2
SYNE3-204ENST00000555759 DSCR8Q96T75 97 aa13.83□□□□□ -0.2
SYNE3-204ENST00000555759 CEP250Q9BV73 2442 aa13.83□□□□□ -0.2
SYNE3-204ENST00000555759 FAM236AA0A1B0GUQ0 79 aa13.83□□□□□ -0.2
SYNE3-204ENST00000555759 FAM236BA0A1B0GV22 79 aa13.83□□□□□ -0.2
SYNE3-204ENST00000555759 CHD3Q12873 2000 aaKnown RBP13.82□□□□□ -0.2
SYNE3-204ENST00000555759 IGLV1-44P01699 117 aa13.82□□□□□ -0.2
SYNE3-204ENST00000555759 FAM167A-AS1Q96KT0 104 aa13.82□□□□□ -0.2
SYNE3-204ENST00000555759 PI4KAP42356 2102 aa13.82□□□□□ -0.2
SYNE3-204ENST00000555759 C17orf77Q96MU5 243 aa13.82□□□□□ -0.2
SYNE3-204ENST00000555759 MSRB2Q9Y3D2 182 aa13.82□□□□□ -0.2
SYNE3-204ENST00000555759 H3BT86 120 aa13.82□□□□□ -0.2
SYNE3-204ENST00000555759 ATP5G1P05496 136 aa13.82□□□□□ -0.2
SYNE3-204ENST00000555759 COL8A2P25067 703 aa13.82□□□□□ -0.2
SYNE3-204ENST00000555759 PIP4P2Q8N4L2 257 aa13.82□□□□□ -0.2
SYNE3-204ENST00000555759 CRLF1O75462 422 aa13.82□□□□□ -0.2
SYNE3-204ENST00000555759 TMEM105Q8N8V8 129 aa13.82□□□□□ -0.2
SYNE3-204ENST00000555759 CFHR4Q92496 578 aa13.82□□□□□ -0.2
SYNE3-204ENST00000555759 ICOSQ9Y6W8 199 aa13.82□□□□□ -0.2
SYNE3-204ENST00000555759 A4D1N5 150 aa13.81□□□□□ -0.2
SYNE3-204ENST00000555759 WDR81Q562E7 1941 aa13.81□□□□□ -0.2
SYNE3-204ENST00000555759 NLRC5Q86WI3 1866 aa13.81□□□□□ -0.2
SYNE3-204ENST00000555759 TRBV6-1A0A0K0K1D8 114 aa13.81□□□□□ -0.2
SYNE3-204ENST00000555759 UBE2E1P51965 193 aa13.81□□□□□ -0.2
SYNE3-204ENST00000555759 DUX4L9Q6RFH8 374 aaPredicted RBP13.81□□□□□ -0.2
SYNE3-204ENST00000555759 DOCK8Q8NF50 2099 aa13.81□□□□□ -0.2
SYNE3-204ENST00000555759 E9PLD3 99 aa13.81□□□□□ -0.2
SYNE3-204ENST00000555759 TRBV10-2A0A0K0K1G8 114 aa13.81□□□□□ -0.2
SYNE3-204ENST00000555759 A0A1W2PRX2 142 aa13.81□□□□□ -0.2
SYNE3-204ENST00000555759 SAA4P35542 130 aa13.81□□□□□ -0.2
SYNE3-204ENST00000555759 DYNAPQ8N1N2 210 aa13.81□□□□□ -0.2
SYNE3-204ENST00000555759 PIFOQ8TCI5 191 aa13.81□□□□□ -0.2
SYNE3-204ENST00000555759 IGLV3-9A0A075B6K5 115 aa13.8□□□□□ -0.2
SYNE3-204ENST00000555759 A0A0G2JNJ9 132 aa13.8□□□□□ -0.2
SYNE3-204ENST00000555759 Q9UFV3 132 aa13.8□□□□□ -0.2
SYNE3-204ENST00000555759 PFN2P35080 140 aa13.8□□□□□ -0.2
SYNE3-204ENST00000555759 HERV-K104P63124 156 aa13.8□□□□□ -0.2
SYNE3-204ENST00000555759 PATE2Q6UY27 113 aa13.8□□□□□ -0.2
SYNE3-204ENST00000555759 AGPAT4-IT1Q9H0P7 198 aa13.8□□□□□ -0.2
SYNE3-204ENST00000555759 NDUFC2O95298 119 aa13.8□□□□□ -0.2
SYNE3-204ENST00000555759 CITED2Q99967 270 aaPredicted RBP13.8□□□□□ -0.2
SYNE3-204ENST00000555759 DSCR9P59020 149 aa13.8□□□□□ -0.2
SYNE3-204ENST00000555759 SPINK13Q1W4C9 94 aa13.8□□□□□ -0.2
SYNE3-204ENST00000555759 TMEM243Q9BU79 118 aa13.79□□□□□ -0.2
SYNE3-204ENST00000555759 KNCNA6PVL3 124 aa13.79□□□□□ -0.2
SYNE3-204ENST00000555759 ORMDL1Q9P0S3 153 aa13.79□□□□□ -0.2
SYNE3-204ENST00000555759 GATA1P15976 413 aaPredicted RBP13.79□□□□□ -0.2
SYNE3-204ENST00000555759 C1orf43Q9BWL3 253 aa13.79□□□□□ -0.2
SYNE3-204ENST00000555759 ODF1Q14990 250 aa13.79□□□□□ -0.2
SYNE3-204ENST00000555759 Q71RC1 249 aaPredicted RBP13.79□□□□□ -0.2
SYNE3-204ENST00000555759 MUSTN1Q8IVN3 82 aa13.79□□□□□ -0.2
SYNE3-204ENST00000555759 TINCRA0A1B0GVN0 87 aa13.78□□□□□ -0.2
SYNE3-204ENST00000555759 CTRLP40313 264 aa13.78□□□□□ -0.2
SYNE3-204ENST00000555759 KLK9Q9UKQ9 250 aa13.78□□□□□ -0.2
SYNE3-204ENST00000555759 DEFB131AP59861 70 aa13.78□□□□□ -0.2
SYNE3-204ENST00000555759 FRMD6-AS1P0C7T7 363 aa13.77□□□□□ -0.2
SYNE3-204ENST00000555759 Q6ZUT4 128 aa13.77□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms