RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 TRAV26-1A0A087WT03 109 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 IGHV3-66A0A0C4DH42 116 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 TMEM8BA6NDV4 472 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 E9PLD3 99 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 K7EIM0 57 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 CRYGBP07316 175 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 LOXP28300 417 aaPredicted RBP3.78□□□□□ -1.8
LIMA1-214ENST00000552783 DLX6P56179 175 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 ECSCRQ19T08 205 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 CD300EQ496F6 205 aaPredicted RBP3.78□□□□□ -1.8
LIMA1-214ENST00000552783 ZNF491Q8N8L2 437 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 FOXC2Q99958 501 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 SHANK2-AS3Q9BTD1 123 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 ZMAT4Q9H898 229 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 TMEM14CQ9P0S9 112 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 PRO0461Q9UI25 63 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 IGHV3OR16-10A0A075B7F0 116 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 SPRY2O43597 315 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 IGHG4P01861 327 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 PRSS1P07477 247 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 GATA3P23771 443 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 RPL11P62913 178 aaKnown RBP3.78□□□□□ -1.8
LIMA1-214ENST00000552783 FOXI2Q6ZQN5 318 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 CEND1Q8N111 149 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 AAMDCQ9H7C9 122 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 TMEM160Q9NX00 188 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 POLQO75417 2590 aa3.78□□□□□ -1.8
LIMA1-214ENST00000552783 H3BRN7 92 aa3.77□□□□□ -1.81
LIMA1-214ENST00000552783 TRGV3P03979 118 aa3.77□□□□□ -1.81
LIMA1-214ENST00000552783 TCF15Q12870 199 aa3.77□□□□□ -1.81
LIMA1-214ENST00000552783 FAM169BQ8N8A8 192 aa3.77□□□□□ -1.81
LIMA1-214ENST00000552783 TMEM158Q8WZ71 300 aa3.77□□□□□ -1.81
LIMA1-214ENST00000552783 ATP6V0BQ99437 205 aa3.77□□□□□ -1.81
LIMA1-214ENST00000552783 MRPL35Q9NZE8 188 aaKnown RBP3.77□□□□□ -1.81
LIMA1-214ENST00000552783 USP9XQ93008 2570 aaPredicted RBP3.77□□□□□ -1.81
LIMA1-214ENST00000552783 CCDC168Q8NDH2 2452 aa3.77□□□□□ -1.81
LIMA1-214ENST00000552783 IGHV1-3A0A0C4DH29 117 aa3.77□□□□□ -1.81
LIMA1-214ENST00000552783 THBDP07204 575 aa3.77□□□□□ -1.81
LIMA1-214ENST00000552783 SMCPP49901 116 aaPredicted RBP3.77□□□□□ -1.81
LIMA1-214ENST00000552783 EFNA4P52798 201 aa3.77□□□□□ -1.81
LIMA1-214ENST00000552783 ERCC8Q13216 396 aa3.77□□□□□ -1.81
LIMA1-214ENST00000552783 C12orf74Q32Q52 190 aa3.77□□□□□ -1.81
LIMA1-214ENST00000552783 NFE4Q86UQ8 179 aa3.77□□□□□ -1.81
LIMA1-214ENST00000552783 PTH2Q96A98 100 aa3.77□□□□□ -1.81
LIMA1-214ENST00000552783 TM2D2Q9BX73 214 aa3.77□□□□□ -1.81
LIMA1-214ENST00000552783 RAB1BQ9H0U4 201 aa3.77□□□□□ -1.81
LIMA1-214ENST00000552783 B9A039 149 aa3.77□□□□□ -1.81
LIMA1-214ENST00000552783 TNFRSF6BO95407 300 aa3.77□□□□□ -1.81
LIMA1-214ENST00000552783 IGKCP01834 107 aa3.77□□□□□ -1.81
LIMA1-214ENST00000552783 ORM1P02763 201 aa3.77□□□□□ -1.81
LIMA1-214ENST00000552783 ZNF672Q499Z4 452 aaPredicted RBP3.77□□□□□ -1.81
LIMA1-214ENST00000552783 IGFL3Q6UXB1 125 aa3.77□□□□□ -1.81
LIMA1-214ENST00000552783 DEFB104AQ8WTQ1 72 aa3.77□□□□□ -1.81
LIMA1-214ENST00000552783 GLMPQ8WWB7 406 aa3.77□□□□□ -1.81
LIMA1-214ENST00000552783 RNF125Q96EQ8 232 aa3.77□□□□□ -1.81
LIMA1-214ENST00000552783 ZNF479Q96JC4 524 aa3.77□□□□□ -1.81
LIMA1-214ENST00000552783 SPATA25Q9BR10 227 aa3.77□□□□□ -1.81
LIMA1-214ENST00000552783 UBTD1Q9HAC8 227 aa3.77□□□□□ -1.81
LIMA1-214ENST00000552783 PRSS29PA6NIE9 313 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 PRAC2D3DTV9 90 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 NDUFA3O95167 84 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 IGLC6P0CF74 106 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 FCER1GP30273 86 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 CKS1BP61024 79 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 NUP37Q8NFH4 326 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 PRR25Q96S07 402 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 HIF1ANQ9NWT6 349 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 C11orf21Q9P2W6 132 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 SONP18583 2426 aaKnown RBP3.76□□□□□ -1.81
LIMA1-214ENST00000552783 IGLV2-18A0A075B6J9 118 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 TRBV6-1A0A0K0K1D8 114 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 F8W735 103 aaPredicted RBP3.76□□□□□ -1.81
LIMA1-214ENST00000552783 TNFRSF13BO14836 293 aaPredicted RBP3.76□□□□□ -1.81
LIMA1-214ENST00000552783 CRYBA4P53673 196 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 TMEM30BQ3MIR4 351 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 TMEM155Q4W5P6 130 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 MORN3Q6PF18 240 aaPredicted RBP3.76□□□□□ -1.81
LIMA1-214ENST00000552783 CDIP1Q9H305 208 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 LINC00527Q9UJ94 153 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 SMAD5-AS1Q9Y6J3 95 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 C2CD3Q4AC94 2353 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 WNK1Q9H4A3 2382 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 MT-ATP8P03928 68 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 NBL1P41271 181 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 DTX2Q86UW9 622 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 RNF182Q8N6D2 247 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 HIGD1BQ9P298 99 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 DPM3Q9P2X0 92 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 RAXQ9Y2V3 346 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 NOTCH2Q04721 2471 aa3.76□□□□□ -1.81
LIMA1-214ENST00000552783 A0A1B0GW15 77 aa3.75□□□□□ -1.81
LIMA1-214ENST00000552783 F8W1H4 67 aa3.75□□□□□ -1.81
LIMA1-214ENST00000552783 BUB1B-PAK6H3BSN5 160 aa3.75□□□□□ -1.81
LIMA1-214ENST00000552783 CEACAM4O75871 244 aa3.75□□□□□ -1.81
LIMA1-214ENST00000552783 ZFP2Q6ZN57 461 aa3.75□□□□□ -1.81
LIMA1-214ENST00000552783 DYNAPQ8N1N2 210 aa3.75□□□□□ -1.81
LIMA1-214ENST00000552783 LINC00311Q8N616 119 aa3.75□□□□□ -1.81
LIMA1-214ENST00000552783 KLK15Q9H2R5 256 aa3.75□□□□□ -1.81
LIMA1-214ENST00000552783 SCGB2A1O75556 95 aa3.75□□□□□ -1.81
LIMA1-214ENST00000552783 IGLV1-47P01700 117 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms