RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 BUB3O43684 328 aa11.59□□□□□ -0.55
USP28-214ENST00000545540 FABP5P3A8MUU1 101 aa11.58□□□□□ -0.55
USP28-214ENST00000545540 FGF6P10767 208 aa11.58□□□□□ -0.55
USP28-214ENST00000545540 KIR3DS1Q14943 382 aa11.58□□□□□ -0.55
USP28-214ENST00000545540 CCDC144NLQ6NUI1 221 aa11.58□□□□□ -0.55
USP28-214ENST00000545540 GTSCR1Q86UQ5 136 aa11.58□□□□□ -0.55
USP28-214ENST00000545540 SRSF8Q9BRL6 282 aaKnown RBP11.58□□□□□ -0.55
USP28-214ENST00000545540 TNFRSF6BO95407 300 aa11.58□□□□□ -0.56
USP28-214ENST00000545540 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.58□□□□□ -0.56
USP28-214ENST00000545540 DTX2Q86UW9 622 aa11.58□□□□□ -0.56
USP28-214ENST00000545540 FBLL1A6NHQ2 334 aaKnown RBP11.58□□□□□ -0.56
USP28-214ENST00000545540 Q8N6K4 173 aa11.58□□□□□ -0.56
USP28-214ENST00000545540 TRBV6-1A0A0K0K1D8 114 aa11.57□□□□□ -0.56
USP28-214ENST00000545540 CLPSL1A2RUU4 121 aa11.57□□□□□ -0.56
USP28-214ENST00000545540 Q6AWC8 147 aa11.57□□□□□ -0.56
USP28-214ENST00000545540 TMEM158Q8WZ71 300 aa11.57□□□□□ -0.56
USP28-214ENST00000545540 F6UB75 175 aa11.57□□□□□ -0.56
USP28-214ENST00000545540 IGLC6P0CF74 106 aa11.57□□□□□ -0.56
USP28-214ENST00000545540 BMI1P35226 326 aa11.57□□□□□ -0.56
USP28-214ENST00000545540 ZNF502Q8TBZ5 544 aa11.57□□□□□ -0.56
USP28-214ENST00000545540 MS4A6AQ9H2W1 248 aa11.57□□□□□ -0.56
USP28-214ENST00000545540 MYO9AB2RTY4 2548 aa11.57□□□□□ -0.56
USP28-214ENST00000545540 SAP30O75446 220 aa11.57□□□□□ -0.56
USP28-214ENST00000545540 EFNA4P52798 201 aa11.57□□□□□ -0.56
USP28-214ENST00000545540 JMJD8Q96S16 334 aa11.57□□□□□ -0.56
USP28-214ENST00000545540 FOXC2Q99958 501 aa11.57□□□□□ -0.56
USP28-214ENST00000545540 TMEM160Q9NX00 188 aa11.57□□□□□ -0.56
USP28-214ENST00000545540 AJUBAQ96IF1 538 aa11.56□□□□□ -0.56
USP28-214ENST00000545540 ZFAND3Q9H8U3 227 aa11.56□□□□□ -0.56
USP28-214ENST00000545540 AGRNO00468 2067 aa11.56□□□□□ -0.56
USP28-214ENST00000545540 H3BVH4 76 aa11.56□□□□□ -0.56
USP28-214ENST00000545540 K7ERJ3 54 aa11.56□□□□□ -0.56
USP28-214ENST00000545540 VPS25Q9BRG1 176 aa11.56□□□□□ -0.56
USP28-214ENST00000545540 SIRPDQ9H106 197 aa11.56□□□□□ -0.56
USP28-214ENST00000545540 CST9LQ9H4G1 147 aa11.56□□□□□ -0.56
USP28-214ENST00000545540 ABCA12Q86UK0 2595 aa11.56□□□□□ -0.56
USP28-214ENST00000545540 GAGE12BA1L429 117 aa11.56□□□□□ -0.56
USP28-214ENST00000545540 C19orf84I3L1E1 186 aa11.56□□□□□ -0.56
USP28-214ENST00000545540 PRR9Q5T870 116 aa11.56□□□□□ -0.56
USP28-214ENST00000545540 MAP1LC3AQ9H492 121 aa11.56□□□□□ -0.56
USP28-214ENST00000545540 U3KQK5 164 aa11.56□□□□□ -0.56
USP28-214ENST00000545540 M0R381 172 aa11.55□□□□□ -0.56
USP28-214ENST00000545540 GCSHP23434 173 aa11.55□□□□□ -0.56
USP28-214ENST00000545540 UNQ9165/PRO28630Q6UXU0 137 aa11.55□□□□□ -0.56
USP28-214ENST00000545540 TRAV8-2A0A0B4J237 113 aa11.55□□□□□ -0.56
USP28-214ENST00000545540 GOSR1O95249 250 aa11.55□□□□□ -0.56
USP28-214ENST00000545540 A0A1B0GW15 77 aa11.54□□□□□ -0.56
USP28-214ENST00000545540 A1L4Q6 167 aa11.54□□□□□ -0.56
USP28-214ENST00000545540 CD5LO43866 347 aa11.54□□□□□ -0.56
USP28-214ENST00000545540 PAX8Q06710 450 aa11.54□□□□□ -0.56
USP28-214ENST00000545540 C8orf86Q6ZUL3 223 aa11.54□□□□□ -0.56
USP28-214ENST00000545540 EDN2P20800 178 aa11.54□□□□□ -0.56
USP28-214ENST00000545540 KLRB1Q12918 225 aa11.54□□□□□ -0.56
USP28-214ENST00000545540 FBXL19-AS1Q494R0 122 aa11.54□□□□□ -0.56
USP28-214ENST00000545540 SPANXN1Q5VSR9 72 aa11.54□□□□□ -0.56
USP28-214ENST00000545540 S100A7AQ86SG5 101 aa11.54□□□□□ -0.56
USP28-214ENST00000545540 C16orf92Q96LL3 132 aa11.54□□□□□ -0.56
USP28-214ENST00000545540 LRRK2Q5S007 2527 aa11.54□□□□□ -0.56
USP28-214ENST00000545540 TRAV40A0A0B4J280 105 aa11.53□□□□□ -0.56
USP28-214ENST00000545540 GAGE10A6NGK3 116 aa11.53□□□□□ -0.56
USP28-214ENST00000545540 SMAD7O15105 426 aaKnown RBP11.53□□□□□ -0.56
USP28-214ENST00000545540 TMEM78Q5T7P6 136 aa11.53□□□□□ -0.56
USP28-214ENST00000545540 AP1S3Q96PC3 154 aa11.53□□□□□ -0.56
USP28-214ENST00000545540 HIF1ANQ9NWT6 349 aa11.53□□□□□ -0.56
USP28-214ENST00000545540 Q6ZS46 218 aa11.53□□□□□ -0.56
USP28-214ENST00000545540 C20orf173Q96LM9 149 aa11.53□□□□□ -0.56
USP28-214ENST00000545540 PIEZO1Q92508 2521 aa11.52□□□□□ -0.56
USP28-214ENST00000545540 PTPN13Q12923 2485 aa11.52□□□□□ -0.56
USP28-214ENST00000545540 LGALS9BQ3B8N2 356 aa11.52□□□□□ -0.57
USP28-214ENST00000545540 LGALS9CQ6DKI2 356 aa11.52□□□□□ -0.57
USP28-214ENST00000545540 OR2K2Q8NGT1 345 aa11.52□□□□□ -0.57
USP28-214ENST00000545540 NEGR1Q7Z3B1 354 aa11.52□□□□□ -0.57
USP28-214ENST00000545540 GATD1Q8NB37 220 aa11.52□□□□□ -0.57
USP28-214ENST00000545540 SONP18583 2426 aaKnown RBP11.51□□□□□ -0.57
USP28-214ENST00000545540 ZC2HC1BQ5TFG8 222 aa11.51□□□□□ -0.57
USP28-214ENST00000545540 BOD1L2Q8IYS8 172 aa11.51□□□□□ -0.57
USP28-214ENST00000545540 FAM110DQ8TAY7 271 aaPredicted RBP11.51□□□□□ -0.57
USP28-214ENST00000545540 CENPVL3A0A0U1RRI6 287 aa11.51□□□□□ -0.57
USP28-214ENST00000545540 TMEM8BA6NDV4 472 aa11.51□□□□□ -0.57
USP28-214ENST00000545540 OCIAD2Q56VL3 154 aa11.51□□□□□ -0.57
USP28-214ENST00000545540 METTL26Q96S19 204 aa11.51□□□□□ -0.57
USP28-214ENST00000545540 FCER1GP30273 86 aa11.51□□□□□ -0.57
USP28-214ENST00000545540 FXYD2P54710 66 aa11.51□□□□□ -0.57
USP28-214ENST00000545540 SMIM17P0DL12 118 aa11.5□□□□□ -0.57
USP28-214ENST00000545540 RIPPLY3P57055 190 aa11.5□□□□□ -0.57
USP28-214ENST00000545540 LMO4P61968 165 aa11.5□□□□□ -0.57
USP28-214ENST00000545540 MRPL35Q9NZE8 188 aaKnown RBP11.5□□□□□ -0.57
USP28-214ENST00000545540 PEF1Q9UBV8 284 aaKnown RBP11.5□□□□□ -0.57
USP28-214ENST00000545540 MXRA5Q9NR99 2828 aa11.5□□□□□ -0.57
USP28-214ENST00000545540 NPFFO15130 113 aa11.5□□□□□ -0.57
USP28-214ENST00000545540 UBE2E1P51965 193 aa11.5□□□□□ -0.57
USP28-214ENST00000545540 ODF1Q14990 250 aa11.5□□□□□ -0.57
USP28-214ENST00000545540 EBI3Q14213 229 aa11.5□□□□□ -0.57
USP28-214ENST00000545540 MINOS1Q5TGZ0 78 aa11.5□□□□□ -0.57
USP28-214ENST00000545540 MTURNQ8N3F0 131 aa11.5□□□□□ -0.57
USP28-214ENST00000545540 MINOS1-NBL1R4GNA1 71 aa11.5□□□□□ -0.57
USP28-214ENST00000545540 A0A0G2JLM5 398 aa11.49□□□□□ -0.57
USP28-214ENST00000545540 ADAMTSL5Q6ZMM2 481 aa11.49□□□□□ -0.57
USP28-214ENST00000545540 C14orf178Q8N769 122 aaPredicted RBP11.49□□□□□ -0.57
USP28-214ENST00000545540 ZNF48Q96MX3 618 aaPredicted RBP11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms