RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 PRSS22Q9GZN4 317 aa9.29□□□□□ -0.92
SYNPO-204ENST00000519664 TCF15Q12870 199 aa9.28□□□□□ -0.92
SYNPO-204ENST00000519664 PATE2Q6UY27 113 aa9.28□□□□□ -0.92
SYNPO-204ENST00000519664 ZNF295-AS1Q8N0V1 137 aa9.28□□□□□ -0.92
SYNPO-204ENST00000519664 VGLL1Q99990 258 aa9.28□□□□□ -0.92
SYNPO-204ENST00000519664 TOMM7Q9P0U1 55 aa9.28□□□□□ -0.92
SYNPO-204ENST00000519664 COX6CP09669 75 aa9.28□□□□□ -0.92
SYNPO-204ENST00000519664 LYPD1Q8N2G4 141 aa9.28□□□□□ -0.92
SYNPO-204ENST00000519664 ZNF491Q8N8L2 437 aa9.28□□□□□ -0.92
SYNPO-204ENST00000519664 FAM120AOSQ5T036 256 aa9.28□□□□□ -0.92
SYNPO-204ENST00000519664 C11orf1Q9H5F2 150 aa9.28□□□□□ -0.92
SYNPO-204ENST00000519664 NCKAP5O14513 1909 aa9.28□□□□□ -0.92
SYNPO-204ENST00000519664 TRAV8-2A0A0B4J237 113 aa9.27□□□□□ -0.92
SYNPO-204ENST00000519664 TMEM8BA6NDV4 472 aa9.27□□□□□ -0.92
SYNPO-204ENST00000519664 EML5Q05BV3 1969 aa9.27□□□□□ -0.92
SYNPO-204ENST00000519664 TRAV26-2A0A0B4J265 109 aa9.27□□□□□ -0.93
SYNPO-204ENST00000519664 ZNF815PA8K554 130 aa9.27□□□□□ -0.93
SYNPO-204ENST00000519664 YPEL4Q96NS1 127 aa9.27□□□□□ -0.93
SYNPO-204ENST00000519664 SPANXA1Q9NS26 97 aa9.27□□□□□ -0.93
SYNPO-204ENST00000519664 SMIM27A0A1W2PRY6 76 aa9.27□□□□□ -0.93
SYNPO-204ENST00000519664 SAP30O75446 220 aa9.27□□□□□ -0.93
SYNPO-204ENST00000519664 PPP1R17O96001 155 aa9.27□□□□□ -0.93
SYNPO-204ENST00000519664 PAX1P15863 534 aa9.27□□□□□ -0.93
SYNPO-204ENST00000519664 LAGE3Q14657 143 aa9.27□□□□□ -0.93
SYNPO-204ENST00000519664 PRR25Q96S07 402 aa9.27□□□□□ -0.93
SYNPO-204ENST00000519664 SYNJ2BPP57105 145 aa9.26□□□□□ -0.93
SYNPO-204ENST00000519664 C3orf36Q3SXR2 165 aa9.26□□□□□ -0.93
SYNPO-204ENST00000519664 KAAG1Q9UBP8 84 aa9.26□□□□□ -0.93
SYNPO-204ENST00000519664 B4DSR2 109 aa9.26□□□□□ -0.93
SYNPO-204ENST00000519664 OVOL1O14753 267 aa9.26□□□□□ -0.93
SYNPO-204ENST00000519664 CHD9Q3L8U1 2897 aa9.26□□□□□ -0.93
SYNPO-204ENST00000519664 TNFRSF6BO95407 300 aa9.26□□□□□ -0.93
SYNPO-204ENST00000519664 UBE2E1P51965 193 aa9.26□□□□□ -0.93
SYNPO-204ENST00000519664 PIP4P2Q8N4L2 257 aa9.26□□□□□ -0.93
SYNPO-204ENST00000519664 CEP192Q8TEP8 1941 aa9.26□□□□□ -0.93
SYNPO-204ENST00000519664 FASNP49327 2511 aaKnown RBP9.26□□□□□ -0.93
SYNPO-204ENST00000519664 TRGV2A0A075B6R0 118 aa9.26□□□□□ -0.93
SYNPO-204ENST00000519664 TRBV7-1A0A0A6YYK4 115 aa9.26□□□□□ -0.93
SYNPO-204ENST00000519664 H7C1H1 209 aa9.26□□□□□ -0.93
SYNPO-204ENST00000519664 IGKV1-17P01599 117 aa9.26□□□□□ -0.93
SYNPO-204ENST00000519664 RNASE1P07998 156 aaKnown RBP9.26□□□□□ -0.93
SYNPO-204ENST00000519664 PAPPA-AS1Q5QFB9 102 aa9.26□□□□□ -0.93
SYNPO-204ENST00000519664 C1orf229Q6ZS94 237 aaPredicted RBP9.26□□□□□ -0.93
SYNPO-204ENST00000519664 PTPRSQ13332 1948 aa9.25□□□□□ -0.93
SYNPO-204ENST00000519664 C9orf139Q6ZV77 190 aa9.25□□□□□ -0.93
SYNPO-204ENST00000519664 IGHV1-24A0A0C4DH33 117 aa9.25□□□□□ -0.93
SYNPO-204ENST00000519664 A8MWV9 139 aa9.25□□□□□ -0.93
SYNPO-204ENST00000519664 PDE6HQ13956 83 aa9.25□□□□□ -0.93
SYNPO-204ENST00000519664 ZNF876PQ49A33 203 aa9.25□□□□□ -0.93
SYNPO-204ENST00000519664 C10orf126Q8N4M7 172 aa9.25□□□□□ -0.93
SYNPO-204ENST00000519664 YAE1D1Q9NRH1 226 aa9.25□□□□□ -0.93
SYNPO-204ENST00000519664 MUC22E2RYF6 1773 aaPredicted RBP9.25□□□□□ -0.93
SYNPO-204ENST00000519664 F8W1H4 67 aa9.25□□□□□ -0.93
SYNPO-204ENST00000519664 HOXA3O43365 443 aaPredicted RBP9.25□□□□□ -0.93
SYNPO-204ENST00000519664 PF4P02776 101 aa9.25□□□□□ -0.93
SYNPO-204ENST00000519664 ORMDL2Q53FV1 153 aa9.25□□□□□ -0.93
SYNPO-204ENST00000519664 FAM104BQ5XKR9 115 aa9.25□□□□□ -0.93
SYNPO-204ENST00000519664 LINC00477Q96M19 166 aa9.25□□□□□ -0.93
SYNPO-204ENST00000519664 KNCNA6PVL3 124 aa9.24□□□□□ -0.93
SYNPO-204ENST00000519664 FAM231DQ6ZW35 169 aa9.24□□□□□ -0.93
SYNPO-204ENST00000519664 A0A1W2PPM0 123 aa9.24□□□□□ -0.93
SYNPO-204ENST00000519664 COX8AP10176 69 aa9.24□□□□□ -0.93
SYNPO-204ENST00000519664 THAP8Q8NA92 274 aa9.24□□□□□ -0.93
SYNPO-204ENST00000519664 CITED1Q99966 193 aa9.24□□□□□ -0.93
SYNPO-204ENST00000519664 NUP210LQ5VU65 1888 aa9.24□□□□□ -0.93
SYNPO-204ENST00000519664 TRAV2A0A0B4J234 112 aa9.24□□□□□ -0.93
SYNPO-204ENST00000519664 ETDBQ3ZM63 59 aa9.24□□□□□ -0.93
SYNPO-204ENST00000519664 MRPL51Q4U2R6 128 aaKnown RBP9.24□□□□□ -0.93
SYNPO-204ENST00000519664 DSCAMO60469 2012 aa9.24□□□□□ -0.93
SYNPO-204ENST00000519664 RNF223E7ERA6 249 aa9.24□□□□□ -0.93
SYNPO-204ENST00000519664 F6UB75 175 aa9.23□□□□□ -0.93
SYNPO-204ENST00000519664 NEGR1Q7Z3B1 354 aa9.23□□□□□ -0.93
SYNPO-204ENST00000519664 UBE2E2Q96LR5 201 aa9.23□□□□□ -0.93
SYNPO-204ENST00000519664 ZNF492Q9P255 531 aa9.23□□□□□ -0.93
SYNPO-204ENST00000519664 H3BRN7 92 aa9.23□□□□□ -0.93
SYNPO-204ENST00000519664 NPC2P61916 151 aa9.23□□□□□ -0.93
SYNPO-204ENST00000519664 CIRBPQ14011 172 aaKnown RBP9.23□□□□□ -0.93
SYNPO-204ENST00000519664 C8orf86Q6ZUL3 223 aa9.23□□□□□ -0.93
SYNPO-204ENST00000519664 TSPAN13O95857 204 aa9.23□□□□□ -0.93
SYNPO-204ENST00000519664 NPYP01303 97 aa9.23□□□□□ -0.93
SYNPO-204ENST00000519664 IGHV3-53P01767 116 aa9.23□□□□□ -0.93
SYNPO-204ENST00000519664 LINC00173Q6ZV60 143 aa9.23□□□□□ -0.93
SYNPO-204ENST00000519664 FAM167A-AS1Q96KT0 104 aa9.23□□□□□ -0.93
SYNPO-204ENST00000519664 BPTFQ12830 3046 aa9.23□□□□□ -0.93
SYNPO-204ENST00000519664 HTN3P15516 51 aa9.22□□□□□ -0.93
SYNPO-204ENST00000519664 OR13C6PQ8NH95 151 aa9.22□□□□□ -0.93
SYNPO-204ENST00000519664 FAM110DQ8TAY7 271 aaPredicted RBP9.22□□□□□ -0.93
SYNPO-204ENST00000519664 GFRA4Q9GZZ7 299 aa9.22□□□□□ -0.93
SYNPO-204ENST00000519664 TRAV12-2A0A075B6T6 113 aa9.22□□□□□ -0.93
SYNPO-204ENST00000519664 TAX1BP3O14907 124 aa9.22□□□□□ -0.93
SYNPO-204ENST00000519664 SPINK13Q1W4C9 94 aa9.22□□□□□ -0.93
SYNPO-204ENST00000519664 STHQ8IWL8 128 aa9.22□□□□□ -0.93
SYNPO-204ENST00000519664 SIGLEC8Q9NYZ4 499 aa9.22□□□□□ -0.93
SYNPO-204ENST00000519664 C10orf142B7Z368 130 aa9.22□□□□□ -0.93
SYNPO-204ENST00000519664 SRSF8Q9BRL6 282 aaKnown RBP9.22□□□□□ -0.93
SYNPO-204ENST00000519664 DPH3P1Q9H4G8 78 aa9.22□□□□□ -0.93
SYNPO-204ENST00000519664 DAZ1Q9NQZ3 744 aaKnown RBP9.22□□□□□ -0.93
SYNPO-204ENST00000519664 G3V4G9 280 aa9.21□□□□□ -0.93
SYNPO-204ENST00000519664 GATA1P15976 413 aaPredicted RBP9.21□□□□□ -0.93
SYNPO-204ENST00000519664 MSRB1Q9NZV6 116 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms