RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 SRSF8Q9BRL6 282 aaKnown RBP12.94□□□□□ -0.34
CCDC88B-209ENST00000494080 RNF114Q9Y508 228 aa12.94□□□□□ -0.34
CCDC88B-209ENST00000494080 TLN2Q9Y4G6 2542 aa12.94□□□□□ -0.34
CCDC88B-209ENST00000494080 ATP6V0E1O15342 81 aa12.93□□□□□ -0.34
CCDC88B-209ENST00000494080 SIGLEC15Q6ZMC9 328 aa12.93□□□□□ -0.34
CCDC88B-209ENST00000494080 SH2D6Q7Z4S9 175 aa12.93□□□□□ -0.34
CCDC88B-209ENST00000494080 NPIPB6E9PJ23 425 aa12.93□□□□□ -0.34
CCDC88B-209ENST00000494080 POU2AF1Q16633 256 aa12.93□□□□□ -0.34
CCDC88B-209ENST00000494080 PAPPA-AS1Q5QFB9 102 aa12.93□□□□□ -0.34
CCDC88B-209ENST00000494080 H7C1H1 209 aa12.93□□□□□ -0.34
CCDC88B-209ENST00000494080 NPYP01303 97 aa12.93□□□□□ -0.34
CCDC88B-209ENST00000494080 KMT2EQ8IZD2 1858 aa12.93□□□□□ -0.34
CCDC88B-209ENST00000494080 LINC01545Q5VT33 79 aa12.93□□□□□ -0.34
CCDC88B-209ENST00000494080 IGF2BP2-AS1Q96M15 143 aa12.93□□□□□ -0.34
CCDC88B-209ENST00000494080 LYPD1Q8N2G4 141 aa12.92□□□□□ -0.34
CCDC88B-209ENST00000494080 YAE1D1Q9NRH1 226 aa12.92□□□□□ -0.34
CCDC88B-209ENST00000494080 UBE2E1P51965 193 aa12.92□□□□□ -0.34
CCDC88B-209ENST00000494080 TRAV26-1A0A087WT03 109 aa12.92□□□□□ -0.34
CCDC88B-209ENST00000494080 FAM120AOSQ5T036 256 aa12.92□□□□□ -0.34
CCDC88B-209ENST00000494080 LAMA2P24043 3122 aaKnown RBP12.91□□□□□ -0.34
CCDC88B-209ENST00000494080 C22orf34Q6ZV56 151 aa12.91□□□□□ -0.34
CCDC88B-209ENST00000494080 CD7P09564 240 aa12.91□□□□□ -0.34
CCDC88B-209ENST00000494080 C1orf122Q6ZSJ8 110 aa12.91□□□□□ -0.34
CCDC88B-209ENST00000494080 SHANK2-AS3Q9BTD1 123 aa12.91□□□□□ -0.34
CCDC88B-209ENST00000494080 ERG28Q9UKR5 140 aa12.91□□□□□ -0.34
CCDC88B-209ENST00000494080 NUP210LQ5VU65 1888 aa12.91□□□□□ -0.34
CCDC88B-209ENST00000494080 IGHV3-64A0A075B6Q5 118 aa12.91□□□□□ -0.34
CCDC88B-209ENST00000494080 Q8NA96 180 aa12.91□□□□□ -0.34
CCDC88B-209ENST00000494080 TMEM95Q3KNT9 176 aa12.91□□□□□ -0.34
CCDC88B-209ENST00000494080 TRAV8-4A0A0B4J246 113 aa12.9□□□□□ -0.34
CCDC88B-209ENST00000494080 LINC01549A6NIU2 74 aa12.9□□□□□ -0.34
CCDC88B-209ENST00000494080 SIVA1O15304 175 aa12.9□□□□□ -0.34
CCDC88B-209ENST00000494080 C19orf54Q5BKX5 351 aa12.9□□□□□ -0.34
CCDC88B-209ENST00000494080 MRPL35Q9NZE8 188 aaKnown RBP12.9□□□□□ -0.34
CCDC88B-209ENST00000494080 TRBV19A0A075B6N1 114 aa12.9□□□□□ -0.34
CCDC88B-209ENST00000494080 SS18L2Q9UHA2 77 aa12.9□□□□□ -0.34
CCDC88B-209ENST00000494080 IGKV1OR2-108A0A075B7D4 117 aa12.9□□□□□ -0.34
CCDC88B-209ENST00000494080 PRSS46E5RG02 174 aa12.89□□□□□ -0.35
CCDC88B-209ENST00000494080 LTAP01374 205 aa12.89□□□□□ -0.35
CCDC88B-209ENST00000494080 G3V4G9 280 aa12.89□□□□□ -0.35
CCDC88B-209ENST00000494080 ZNF688P0C7X2 276 aa12.89□□□□□ -0.35
CCDC88B-209ENST00000494080 CIRBPQ14011 172 aaKnown RBP12.89□□□□□ -0.35
CCDC88B-209ENST00000494080 CEND1Q8N111 149 aa12.89□□□□□ -0.35
CCDC88B-209ENST00000494080 TMEM75Q8N9X5 138 aa12.89□□□□□ -0.35
CCDC88B-209ENST00000494080 SCGB1A1P11684 91 aa12.89□□□□□ -0.35
CCDC88B-209ENST00000494080 GTSF1Q8WW33 167 aa12.89□□□□□ -0.35
CCDC88B-209ENST00000494080 TTTY13Q9BZ97 58 aa12.89□□□□□ -0.35
CCDC88B-209ENST00000494080 LRP4O75096 1905 aa12.89□□□□□ -0.35
CCDC88B-209ENST00000494080 C9JAW5 83 aa12.88□□□□□ -0.35
CCDC88B-209ENST00000494080 K7EMI3 77 aa12.88□□□□□ -0.35
CCDC88B-209ENST00000494080 TRAV21A0A0B4J279 112 aa12.88□□□□□ -0.35
CCDC88B-209ENST00000494080 B5MCH6 92 aa12.88□□□□□ -0.35
CCDC88B-209ENST00000494080 MSMBP08118 114 aa12.88□□□□□ -0.35
CCDC88B-209ENST00000494080 WFDC2Q14508 124 aa12.88□□□□□ -0.35
CCDC88B-209ENST00000494080 FAM167A-AS1Q96KT0 104 aa12.88□□□□□ -0.35
CCDC88B-209ENST00000494080 USP9YO00507 2555 aaPredicted RBP12.87□□□□□ -0.35
CCDC88B-209ENST00000494080 RNF223E7ERA6 249 aa12.87□□□□□ -0.35
CCDC88B-209ENST00000494080 DSCR9P59020 149 aa12.87□□□□□ -0.35
CCDC88B-209ENST00000494080 ANXA2RQ3ZCQ2 193 aa12.87□□□□□ -0.35
CCDC88B-209ENST00000494080 RITA1Q96K30 269 aa12.87□□□□□ -0.35
CCDC88B-209ENST00000494080 DUX3Q96PT4 197 aa12.87□□□□□ -0.35
CCDC88B-209ENST00000494080 TRBV7-1A0A0A6YYK4 115 aa12.87□□□□□ -0.35
CCDC88B-209ENST00000494080 CRYBA4P53673 196 aa12.87□□□□□ -0.35
CCDC88B-209ENST00000494080 OVOL3O00110 214 aa12.87□□□□□ -0.35
CCDC88B-209ENST00000494080 C12orf74Q32Q52 190 aa12.87□□□□□ -0.35
CCDC88B-209ENST00000494080 SPATA12Q7Z6I5 190 aa12.87□□□□□ -0.35
CCDC88B-209ENST00000494080 PF4P02776 101 aa12.86□□□□□ -0.35
CCDC88B-209ENST00000494080 P0C879 139 aa12.86□□□□□ -0.35
CCDC88B-209ENST00000494080 ERCC8Q13216 396 aa12.86□□□□□ -0.35
CCDC88B-209ENST00000494080 MEIG1Q5JSS6 88 aa12.86□□□□□ -0.35
CCDC88B-209ENST00000494080 UTF1Q5T230 341 aa12.86□□□□□ -0.35
CCDC88B-209ENST00000494080 PATE2Q6UY27 113 aa12.86□□□□□ -0.35
CCDC88B-209ENST00000494080 TRAV12-3A0A0B4J271 114 aa12.86□□□□□ -0.35
CCDC88B-209ENST00000494080 PROP1O75360 226 aa12.86□□□□□ -0.35
CCDC88B-209ENST00000494080 FXYD2P54710 66 aa12.86□□□□□ -0.35
CCDC88B-209ENST00000494080 RNF182Q8N6D2 247 aa12.86□□□□□ -0.35
CCDC88B-209ENST00000494080 BRWD1-AS2P59051 145 aa12.86□□□□□ -0.35
CCDC88B-209ENST00000494080 GDF5OSQ5U4N7 250 aa12.86□□□□□ -0.35
CCDC88B-209ENST00000494080 PPDPFLQ8WWR9 84 aa12.86□□□□□ -0.35
CCDC88B-209ENST00000494080 CITED1Q99966 193 aa12.86□□□□□ -0.35
CCDC88B-209ENST00000494080 TRBV25-1A0A075B6N4 114 aa12.85□□□□□ -0.35
CCDC88B-209ENST00000494080 UBE2L6O14933 153 aa12.85□□□□□ -0.35
CCDC88B-209ENST00000494080 C14orf178Q8N769 122 aaPredicted RBP12.85□□□□□ -0.35
CCDC88B-209ENST00000494080 TMEM190Q8WZ59 177 aa12.85□□□□□ -0.35
CCDC88B-209ENST00000494080 C17orf77Q96MU5 243 aa12.85□□□□□ -0.35
CCDC88B-209ENST00000494080 IGHV1-69DA0A0B4J2H0 117 aa12.85□□□□□ -0.35
CCDC88B-209ENST00000494080 IGHV1-69P01742 117 aa12.85□□□□□ -0.35
CCDC88B-209ENST00000494080 SP5Q6BEB4 398 aaPredicted RBP12.85□□□□□ -0.35
CCDC88B-209ENST00000494080 USP9XQ93008 2570 aaPredicted RBP12.85□□□□□ -0.35
CCDC88B-209ENST00000494080 LINC00310P59036 64 aa12.85□□□□□ -0.35
CCDC88B-209ENST00000494080 RNASE1P07998 156 aaKnown RBP12.84□□□□□ -0.35
CCDC88B-209ENST00000494080 ADORA2A-AS1P86434 159 aa12.84□□□□□ -0.35
CCDC88B-209ENST00000494080 THAP8Q8NA92 274 aa12.84□□□□□ -0.35
CCDC88B-209ENST00000494080 CLUHP3Q96NS8 147 aa12.84□□□□□ -0.35
CCDC88B-209ENST00000494080 JMJD1CQ15652 2540 aa12.84□□□□□ -0.35
CCDC88B-209ENST00000494080 TNRC6AQ8NDV7 1962 aaKnown RBP12.84□□□□□ -0.35
CCDC88B-209ENST00000494080 FCN3O75636 299 aa12.84□□□□□ -0.35
CCDC88B-209ENST00000494080 SUMO2P61956 95 aaKnown RBP12.84□□□□□ -0.35
CCDC88B-209ENST00000494080 LINC01587Q99440 93 aa12.84□□□□□ -0.35
CCDC88B-209ENST00000494080 RHPN1-AS1Q9BWJ2 59 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms