RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 ZNF705BP0CI00 300 aaPredicted RBP2.29□□□□□ -2.04
VPS13A-212ENST00000493341 P0DMU3 169 aa2.29□□□□□ -2.04
VPS13A-212ENST00000493341 FAM231AP0DMU4 169 aa2.29□□□□□ -2.04
VPS13A-212ENST00000493341 FAM231CP0DMU5 169 aa2.29□□□□□ -2.04
VPS13A-212ENST00000493341 RPL35P42766 123 aaKnown RBP2.29□□□□□ -2.04
VPS13A-212ENST00000493341 C9orf163Q8N9P6 203 aa2.29□□□□□ -2.04
VPS13A-212ENST00000493341 OR5D16Q8NGK9 328 aa2.29□□□□□ -2.04
VPS13A-212ENST00000493341 TXNDC17Q9BRA2 123 aa2.29□□□□□ -2.04
VPS13A-212ENST00000493341 CACYBPQ9HB71 228 aaKnown RBP2.29□□□□□ -2.04
VPS13A-212ENST00000493341 TMEM138Q9NPI0 162 aa2.29□□□□□ -2.04
VPS13A-212ENST00000493341 RANBP2P49792 3224 aaKnown RBP2.28□□□□□ -2.04
VPS13A-212ENST00000493341 A0A087WX48 190 aa2.28□□□□□ -2.04
VPS13A-212ENST00000493341 A8MWV9 139 aa2.28□□□□□ -2.04
VPS13A-212ENST00000493341 C5orf67F2Z3F1 127 aa2.28□□□□□ -2.04
VPS13A-212ENST00000493341 OVOL1O14753 267 aa2.28□□□□□ -2.04
VPS13A-212ENST00000493341 CCDC153Q494R4 210 aa2.28□□□□□ -2.04
VPS13A-212ENST00000493341 TMEM229BQ8NBD8 167 aa2.28□□□□□ -2.04
VPS13A-212ENST00000493341 BORCS5Q969J3 196 aa2.28□□□□□ -2.04
VPS13A-212ENST00000493341 OR2H1Q9GZK4 316 aa2.28□□□□□ -2.04
VPS13A-212ENST00000493341 FAM107BQ9H098 131 aa2.28□□□□□ -2.04
VPS13A-212ENST00000493341 CHD7Q9P2D1 2997 aa2.28□□□□□ -2.04
VPS13A-212ENST00000493341 TRAV36DV7A0A075B6V5 113 aa2.27□□□□□ -2.05
VPS13A-212ENST00000493341 RER1O15258 196 aa2.27□□□□□ -2.05
VPS13A-212ENST00000493341 C1QCP02747 245 aa2.27□□□□□ -2.05
VPS13A-212ENST00000493341 MT-ND6P03923 174 aa2.27□□□□□ -2.05
VPS13A-212ENST00000493341 IFNA4P05014 189 aa2.27□□□□□ -2.05
VPS13A-212ENST00000493341 GTF2A1P52655 376 aaPredicted RBP2.27□□□□□ -2.05
VPS13A-212ENST00000493341 DEFB103AP81534 67 aa2.27□□□□□ -2.05
VPS13A-212ENST00000493341 LINC00301Q8NCQ3 95 aa2.27□□□□□ -2.05
VPS13A-212ENST00000493341 SPACA4Q8TDM5 124 aa2.27□□□□□ -2.05
VPS13A-212ENST00000493341 LCE3DQ9BYE3 92 aa2.27□□□□□ -2.05
VPS13A-212ENST00000493341 TCEAL2Q9H3H9 227 aaPredicted RBP2.27□□□□□ -2.05
VPS13A-212ENST00000493341 TRAV5A0A0B4J249 113 aa2.27□□□□□ -2.05
VPS13A-212ENST00000493341 ASAH2BP0C7U1 165 aa2.27□□□□□ -2.05
VPS13A-212ENST00000493341 NDUFA6P56556 154 aa2.27□□□□□ -2.05
VPS13A-212ENST00000493341 RPS28P62857 69 aaKnown RBP2.27□□□□□ -2.05
VPS13A-212ENST00000493341 ZNF846Q147U1 533 aa2.27□□□□□ -2.05
VPS13A-212ENST00000493341 RETNLBQ9BQ08 111 aa2.27□□□□□ -2.05
VPS13A-212ENST00000493341 RASL12Q9NYN1 266 aa2.27□□□□□ -2.05
VPS13A-212ENST00000493341 REV3LO60673 3130 aa2.27□□□□□ -2.05
VPS13A-212ENST00000493341 ANK1P16157 1881 aa2.26□□□□□ -2.05
VPS13A-212ENST00000493341 PLXNA3P51805 1871 aa2.26□□□□□ -2.05
VPS13A-212ENST00000493341 CITO14578 2027 aa2.26□□□□□ -2.05
VPS13A-212ENST00000493341 PRRC2BQ5JSZ5 2229 aaKnown RBP2.26□□□□□ -2.05
VPS13A-212ENST00000493341 SZT2Q5T011 3432 aa2.26□□□□□ -2.05
VPS13A-212ENST00000493341 COL4A2P08572 1712 aa2.26□□□□□ -2.05
VPS13A-212ENST00000493341 J3QRE1 110 aa2.26□□□□□ -2.05
VPS13A-212ENST00000493341 PROSCO94903 275 aa2.26□□□□□ -2.05
VPS13A-212ENST00000493341 CMPK1P30085 196 aa2.26□□□□□ -2.05
VPS13A-212ENST00000493341 KLRD1Q13241 179 aa2.26□□□□□ -2.05
VPS13A-212ENST00000493341 PHF5AQ7RTV0 110 aaKnown RBP2.26□□□□□ -2.05
VPS13A-212ENST00000493341 Q8IYB0 196 aa2.26□□□□□ -2.05
VPS13A-212ENST00000493341 OR8I2Q8N0Y5 310 aa2.26□□□□□ -2.05
VPS13A-212ENST00000493341 LINC00467Q9BRT7 94 aa2.26□□□□□ -2.05
VPS13A-212ENST00000493341 NUP210Q8TEM1 1887 aaPredicted RBP2.26□□□□□ -2.05
VPS13A-212ENST00000493341 LAMA2P24043 3122 aaKnown RBP2.26□□□□□ -2.05
VPS13A-212ENST00000493341 CD52P31358 61 aa2.25□□□□□ -2.05
VPS13A-212ENST00000493341 SSR2P43308 183 aa2.25□□□□□ -2.05
VPS13A-212ENST00000493341 ELOBQ15370 118 aa2.25□□□□□ -2.05
VPS13A-212ENST00000493341 VMA21Q3ZAQ7 101 aa2.25□□□□□ -2.05
VPS13A-212ENST00000493341 PATE2Q6UY27 113 aa2.25□□□□□ -2.05
VPS13A-212ENST00000493341 C4orf22Q6V702 233 aa2.25□□□□□ -2.05
VPS13A-212ENST00000493341 TEX29Q8N6K0 151 aa2.25□□□□□ -2.05
VPS13A-212ENST00000493341 SPANXCQ9NY87 97 aa2.25□□□□□ -2.05
VPS13A-212ENST00000493341 COL6A3P12111 3177 aa2.25□□□□□ -2.05
VPS13A-212ENST00000493341 A0A1B0GX51 115 aa2.25□□□□□ -2.05
VPS13A-212ENST00000493341 UBL3O95164 117 aa2.25□□□□□ -2.05
VPS13A-212ENST00000493341 HMGN1P05114 100 aa2.25□□□□□ -2.05
VPS13A-212ENST00000493341 BAALC-AS2P0C853 105 aa2.25□□□□□ -2.05
VPS13A-212ENST00000493341 TSC2P49815 1807 aa2.25□□□□□ -2.05
VPS13A-212ENST00000493341 LINC00305Q7Z4B0 112 aa2.25□□□□□ -2.05
VPS13A-212ENST00000493341 CHCHD1Q96BP2 118 aaKnown RBP2.25□□□□□ -2.05
VPS13A-212ENST00000493341 BRWD1Q9NSI6 2320 aa2.25□□□□□ -2.05
VPS13A-212ENST00000493341 CCDC88CQ9P219 2028 aa2.25□□□□□ -2.05
VPS13A-212ENST00000493341 PRUNE2Q8WUY3 3088 aa2.25□□□□□ -2.05
VPS13A-212ENST00000493341 RP1P56715 2156 aa2.24□□□□□ -2.05
VPS13A-212ENST00000493341 SDC4P31431 198 aa2.24□□□□□ -2.05
VPS13A-212ENST00000493341 CKS1BP61024 79 aa2.24□□□□□ -2.05
VPS13A-212ENST00000493341 OR2T35Q8NGX2 323 aa2.24□□□□□ -2.05
VPS13A-212ENST00000493341 LXNQ9BS40 222 aa2.24□□□□□ -2.05
VPS13A-212ENST00000493341 LAMA3Q16787 3333 aa2.24□□□□□ -2.05
VPS13A-212ENST00000493341 DIDO1Q9BTC0 2240 aaKnown RBP2.24□□□□□ -2.05
VPS13A-212ENST00000493341 FANCMQ8IYD8 2048 aa2.24□□□□□ -2.05
VPS13A-212ENST00000493341 TCHHQ07283 1943 aa2.24□□□□□ -2.05
VPS13A-212ENST00000493341 IGHV1-58A0A0C4DH39 117 aa2.24□□□□□ -2.05
VPS13A-212ENST00000493341 TMEM189A5PLL7 270 aa2.24□□□□□ -2.05
VPS13A-212ENST00000493341 RNASE11Q8TAA1 199 aaKnown RBP2.24□□□□□ -2.05
VPS13A-212ENST00000493341 BRK1Q8WUW1 75 aa2.24□□□□□ -2.05
VPS13A-212ENST00000493341 C14orf132Q9NPU4 83 aa2.24□□□□□ -2.05
VPS13A-212ENST00000493341 LY96Q9Y6Y9 160 aa2.24□□□□□ -2.05
VPS13A-212ENST00000493341 NCOR1O75376 2440 aa2.23□□□□□ -2.05
VPS13A-212ENST00000493341 ICE1Q9Y2F5 2266 aa2.23□□□□□ -2.05
VPS13A-212ENST00000493341 BDP1A6H8Y1 2624 aa2.23□□□□□ -2.05
VPS13A-212ENST00000493341 PATJQ8NI35 1801 aa2.23□□□□□ -2.05
VPS13A-212ENST00000493341 BORCS7-ASMTA0A0B4J1R7 106 aa2.23□□□□□ -2.05
VPS13A-212ENST00000493341 LOC107984640A0A0U1RRK4 108 aa2.23□□□□□ -2.05
VPS13A-212ENST00000493341 LOC730098B7Z3J9 87 aa2.23□□□□□ -2.05
VPS13A-212ENST00000493341 M0QZK8 103 aa2.23□□□□□ -2.05
VPS13A-212ENST00000493341 CRPP02741 224 aa2.23□□□□□ -2.05
VPS13A-212ENST00000493341 MIFP14174 115 aa2.23□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms