RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 ITPR1Q14643 2758 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 YTHDC2Q9H6S0 1430 aaKnown RBP0.52□□□□□ -2.33
CPSF3-205ENST00000489629 COL1A1P02452 1464 aaPredicted RBP0.52□□□□□ -2.33
CPSF3-205ENST00000489629 DLC1Q96QB1 1528 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 LRP6O75581 1613 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 TET3O43151 1660 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 NINQ8N4C6 2090 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 ZGRF1Q86YA3 2104 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 HIVEP3Q5T1R4 2406 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 AKAP13Q12802 2813 aa0.51□□□□□ -2.33
CPSF3-205ENST00000489629 TRAV5A0A0B4J249 113 aa0.51□□□□□ -2.33
CPSF3-205ENST00000489629 A0A1B0GV72 72 aa0.51□□□□□ -2.33
CPSF3-205ENST00000489629 hDV103S1A0JD37 113 aa0.51□□□□□ -2.33
CPSF3-205ENST00000489629 CNOT1A5YKK6 2376 aaKnown RBP0.51□□□□□ -2.33
CPSF3-205ENST00000489629 NUPR1O60356 82 aa0.51□□□□□ -2.33
CPSF3-205ENST00000489629 CST7O76096 145 aa0.51□□□□□ -2.33
CPSF3-205ENST00000489629 IFNA21P01568 189 aa0.51□□□□□ -2.33
CPSF3-205ENST00000489629 BCL2P10415 239 aa0.51□□□□□ -2.33
CPSF3-205ENST00000489629 FABP2P12104 132 aa0.51□□□□□ -2.33
CPSF3-205ENST00000489629 RPS3P23396 243 aaKnown RBP eCLIP0.51□□□□□ -2.337e-7■■■■□ 25.3
CPSF3-205ENST00000489629 RPL35P42766 123 aaKnown RBP0.51□□□□□ -2.33
CPSF3-205ENST00000489629 POLR2HP52434 150 aaKnown RBP0.51□□□□□ -2.33
CPSF3-205ENST00000489629 CAMSAP2Q08AD1 1489 aa0.51□□□□□ -2.33
CPSF3-205ENST00000489629 FRYQ5TBA9 3013 aa0.51□□□□□ -2.33
CPSF3-205ENST00000489629 PPRC1Q5VV67 1664 aaKnown RBP0.51□□□□□ -2.33
CPSF3-205ENST00000489629 ARPINQ7Z6K5 226 aa0.51□□□□□ -2.33
CPSF3-205ENST00000489629 IFT20Q8IY31 132 aa0.51□□□□□ -2.33
CPSF3-205ENST00000489629 FAM216BQ8N7L0 139 aa0.51□□□□□ -2.33
CPSF3-205ENST00000489629 RTL9Q8NET4 1388 aa0.51□□□□□ -2.33
CPSF3-205ENST00000489629 THEM6Q8WUY1 208 aa0.51□□□□□ -2.33
CPSF3-205ENST00000489629 BORCS5Q969J3 196 aa0.51□□□□□ -2.33
CPSF3-205ENST00000489629 MUCL1Q96DR8 90 aa0.51□□□□□ -2.33
CPSF3-205ENST00000489629 EFCAB11Q9BUY7 163 aa0.51□□□□□ -2.33
CPSF3-205ENST00000489629 CENPHQ9H3R5 247 aa0.51□□□□□ -2.33
CPSF3-205ENST00000489629 PEAK1Q9H792 1746 aa0.51□□□□□ -2.33
CPSF3-205ENST00000489629 MRPL40Q9NQ50 206 aaKnown RBP0.51□□□□□ -2.33
CPSF3-205ENST00000489629 CDK12Q9NYV4 1490 aaPredicted RBP0.51□□□□□ -2.33
CPSF3-205ENST00000489629 ORMDL1Q9P0S3 153 aa0.51□□□□□ -2.33
CPSF3-205ENST00000489629 DIP2BQ9P265 1576 aa0.51□□□□□ -2.33
CPSF3-205ENST00000489629 MRC2Q9UBG0 1479 aa0.51□□□□□ -2.33
CPSF3-205ENST00000489629 TRAPPC2LQ9UL33 140 aa0.51□□□□□ -2.33
CPSF3-205ENST00000489629 V9GYQ6 96 aa0.51□□□□□ -2.33
CPSF3-205ENST00000489629 LRBAP50851 2863 aa0.51□□□□□ -2.33
CPSF3-205ENST00000489629 MUC4Q99102 2169 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 PHLPP1O60346 1717 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 PREX1Q8TCU6 1659 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 ALKQ9UM73 1620 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 NISCHQ9Y2I1 1504 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 FRYLO94915 3013 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 BLMP54132 1417 aaPredicted RBP0.5□□□□□ -2.33
CPSF3-205ENST00000489629 APCP25054 2843 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 ITPR2Q14571 2701 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 TRAV27A0A087WT01 109 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 F8W1H4 67 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 H3BQV1 296 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 KPNA4O00629 521 aaPredicted RBP0.5□□□□□ -2.33
CPSF3-205ENST00000489629 MT-ND6P03923 174 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 NBEAP1P0C6P0 100 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 TFAMQ00059 246 aaKnown RBP0.5□□□□□ -2.33
CPSF3-205ENST00000489629 PRB3Q04118 309 aaPredicted RBP0.5□□□□□ -2.33
CPSF3-205ENST00000489629 MIR22HGQ0VDD5 57 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 DEFB115Q30KQ5 88 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 TMEM128Q5BJH2 165 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 FAM74A1Q5RGS3 127 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 FOXI2Q6ZQN5 318 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 ZCCHC23Q6ZST2 131 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 GKN2Q86XP6 184 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 LINC00269Q8N2A0 174 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 TEX29Q8N6K0 151 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 CCL4L1Q8NHW4 92 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 C4orf3Q8WVX3 66 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 DIRC1Q969H9 104 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 LINC00526Q96FQ7 95 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 CCDC115Q96NT0 180 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 MRPL57Q9BQC6 102 aaKnown RBP0.5□□□□□ -2.33
CPSF3-205ENST00000489629 DDA1Q9BW61 102 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 FKBP11Q9NYL4 201 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 ATPIF1Q9UII2 106 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 MED31Q9Y3C7 131 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 LOC400499M0QZD8 3231 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 ANK1P16157 1881 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 DMDP11532 3685 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 SPENQ96T58 3664 aaKnown RBP0.5□□□□□ -2.33
CPSF3-205ENST00000489629 UNC13AQ9UPW8 1703 aa0.5□□□□□ -2.33
CPSF3-205ENST00000489629 WIZO95785 1651 aa0.49□□□□□ -2.33
CPSF3-205ENST00000489629 COL4A6Q14031 1691 aa0.49□□□□□ -2.33
CPSF3-205ENST00000489629 RIF1Q5UIP0 2472 aaKnown RBP0.49□□□□□ -2.33
CPSF3-205ENST00000489629 NWD1Q149M9 1564 aa0.49□□□□□ -2.33
CPSF3-205ENST00000489629 DCAF1Q9Y4B6 1507 aa0.49□□□□□ -2.33
CPSF3-205ENST00000489629 GAPVD1Q14C86 1478 aa0.49□□□□□ -2.33
CPSF3-205ENST00000489629 TNS3Q68CZ2 1445 aa0.49□□□□□ -2.33
CPSF3-205ENST00000489629 TRAPPC8Q9Y2L5 1435 aa0.49□□□□□ -2.33
CPSF3-205ENST00000489629 SPTBP11277 2137 aa0.49□□□□□ -2.33
CPSF3-205ENST00000489629 PRORSD1PA6NEY8 169 aa0.49□□□□□ -2.33
CPSF3-205ENST00000489629 IFNA4P05014 189 aa0.49□□□□□ -2.33
CPSF3-205ENST00000489629 FOXA3P55318 350 aaPredicted RBP0.49□□□□□ -2.33
CPSF3-205ENST00000489629 PSG9Q00887 426 aa0.49□□□□□ -2.33
CPSF3-205ENST00000489629 KRTAP20-1Q3LI63 56 aa0.49□□□□□ -2.33
CPSF3-205ENST00000489629 C2orf82Q6UX34 121 aa0.49□□□□□ -2.33
CPSF3-205ENST00000489629 LINC00322Q6ZN03 302 aaPredicted RBP0.49□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms