RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 THAP6Q8TBB0 222 aa8.43□□□□□ -1.06
CPSF3-204ENST00000489403 C8orf49Q96NF6 230 aa8.43□□□□□ -1.06
CPSF3-204ENST00000489403 OR51M1Q9H341 326 aa8.43□□□□□ -1.06
CPSF3-204ENST00000489403 HHLA3Q9XRX5 114 aa8.43□□□□□ -1.06
CPSF3-204ENST00000489403 VPS13BQ7Z7G8 4022 aa8.43□□□□□ -1.06
CPSF3-204ENST00000489403 H2AFB2P0C5Z0 115 aa8.42□□□□□ -1.06
CPSF3-204ENST00000489403 NBEAP1P0C6P0 100 aa8.42□□□□□ -1.06
CPSF3-204ENST00000489403 ZNF138P52744 262 aa8.42□□□□□ -1.06
CPSF3-204ENST00000489403 NHLH2Q02577 135 aa8.42□□□□□ -1.06
CPSF3-204ENST00000489403 NEGR1Q7Z3B1 354 aa8.42□□□□□ -1.06
CPSF3-204ENST00000489403 NFE4Q86UQ8 179 aa8.42□□□□□ -1.06
CPSF3-204ENST00000489403 FXYD5Q96DB9 178 aa8.42□□□□□ -1.06
CPSF3-204ENST00000489403 PHYHIPLQ96FC7 376 aa8.42□□□□□ -1.06
CPSF3-204ENST00000489403 PTTG2Q9NZH5 202 aa8.42□□□□□ -1.06
CPSF3-204ENST00000489403 FAT1Q14517 4588 aa8.41□□□□□ -1.06
CPSF3-204ENST00000489403 A0A087WTM6 91 aa8.41□□□□□ -1.06
CPSF3-204ENST00000489403 TRGV4A0A0C4DH28 118 aa8.41□□□□□ -1.06
CPSF3-204ENST00000489403 TRBV7-9A0A0J9YWB2 115 aa8.41□□□□□ -1.06
CPSF3-204ENST00000489403 E5RGE8 158 aa8.41□□□□□ -1.06
CPSF3-204ENST00000489403 J3QL48 77 aa8.41□□□□□ -1.06
CPSF3-204ENST00000489403 K7EQD1 137 aa8.41□□□□□ -1.06
CPSF3-204ENST00000489403 OR10J4P0C629 311 aa8.41□□□□□ -1.06
CPSF3-204ENST00000489403 SFTA3P0C7M3 94 aa8.41□□□□□ -1.06
CPSF3-204ENST00000489403 MUC21Q5SSG8 566 aa8.41□□□□□ -1.06
CPSF3-204ENST00000489403 WFDC10BQ8IUB3 73 aa8.41□□□□□ -1.06
CPSF3-204ENST00000489403 OR5C1Q8NGR4 320 aa8.41□□□□□ -1.06
CPSF3-204ENST00000489403 ZNF479Q96JC4 524 aa8.41□□□□□ -1.06
CPSF3-204ENST00000489403 PAXXQ9BUH6 204 aa8.41□□□□□ -1.06
CPSF3-204ENST00000489403 MRPL32Q9BYC8 188 aaKnown RBP8.41□□□□□ -1.06
CPSF3-204ENST00000489403 MDFICQ9P1T7 246 aa8.41□□□□□ -1.06
CPSF3-204ENST00000489403 LY96Q9Y6Y9 160 aa8.41□□□□□ -1.06
CPSF3-204ENST00000489403 KRTAP10-1P60331 282 aa8.4□□□□□ -1.06
CPSF3-204ENST00000489403 ZNF266Q14584 549 aa8.4□□□□□ -1.06
CPSF3-204ENST00000489403 OR10G4Q8NGN3 311 aa8.4□□□□□ -1.06
CPSF3-204ENST00000489403 TRAV9-2A0A087WT02 112 aa8.39□□□□□ -1.07
CPSF3-204ENST00000489403 RBAKDNA6NC62 111 aa8.39□□□□□ -1.07
CPSF3-204ENST00000489403 INAFM2P0DMQ5 153 aa8.39□□□□□ -1.07
CPSF3-204ENST00000489403 SRIP30626 198 aa8.39□□□□□ -1.07
CPSF3-204ENST00000489403 Q5VSD8 79 aa8.39□□□□□ -1.07
CPSF3-204ENST00000489403 Q6AWC8 147 aa8.39□□□□□ -1.07
CPSF3-204ENST00000489403 IQCF2Q8IXL9 164 aa8.39□□□□□ -1.07
CPSF3-204ENST00000489403 WDR61Q9GZS3 305 aaKnown RBP8.39□□□□□ -1.07
CPSF3-204ENST00000489403 OR5AC2Q9NZP5 309 aa8.39□□□□□ -1.07
CPSF3-204ENST00000489403 MSRB1Q9NZV6 116 aa8.39□□□□□ -1.07
CPSF3-204ENST00000489403 FAM240BA0A1B0GVZ2 78 aa8.38□□□□□ -1.07
CPSF3-204ENST00000489403 OR7C2O60412 319 aa8.38□□□□□ -1.07
CPSF3-204ENST00000489403 SIX6O95475 246 aa8.38□□□□□ -1.07
CPSF3-204ENST00000489403 IFNA5P01569 189 aa8.38□□□□□ -1.07
CPSF3-204ENST00000489403 GYPEP15421 78 aa8.38□□□□□ -1.07
CPSF3-204ENST00000489403 CSN1S1P47710 185 aa8.38□□□□□ -1.07
CPSF3-204ENST00000489403 PCNPQ8WW12 178 aaKnown RBP8.38□□□□□ -1.07
CPSF3-204ENST00000489403 RASL10AQ92737 203 aa8.38□□□□□ -1.07
CPSF3-204ENST00000489403 CCDC32Q9BV29 185 aa8.38□□□□□ -1.07
CPSF3-204ENST00000489403 SLC25A31Q9H0C2 315 aa8.38□□□□□ -1.07
CPSF3-204ENST00000489403 KCNIP2Q9NS61 270 aa8.38□□□□□ -1.07
CPSF3-204ENST00000489403 TRGV11A0A075B6L2 103 aa8.37□□□□□ -1.07
CPSF3-204ENST00000489403 H0YIZ8 118 aa8.37□□□□□ -1.07
CPSF3-204ENST00000489403 K7EP13 123 aa8.37□□□□□ -1.07
CPSF3-204ENST00000489403 ORM1P02763 201 aa8.37□□□□□ -1.07
CPSF3-204ENST00000489403 EVI2AP22794 236 aa8.37□□□□□ -1.07
CPSF3-204ENST00000489403 RANP62826 216 aaKnown RBP8.37□□□□□ -1.07
CPSF3-204ENST00000489403 TMEM183BQ1AE95 376 aa8.37□□□□□ -1.07
CPSF3-204ENST00000489403 LRRC37A5PQ49AS3 106 aa8.37□□□□□ -1.07
CPSF3-204ENST00000489403 TMEM183AQ8IXX5 376 aa8.37□□□□□ -1.07
CPSF3-204ENST00000489403 FRZBQ92765 325 aa8.37□□□□□ -1.07
CPSF3-204ENST00000489403 SPXQ9BT56 116 aa8.37□□□□□ -1.07
CPSF3-204ENST00000489403 LENEPQ9Y5L5 61 aa8.37□□□□□ -1.07
CPSF3-204ENST00000489403 TRAV4A0A0B4J268 109 aa8.36□□□□□ -1.07
CPSF3-204ENST00000489403 DIRC3C9JPN6 131 aa8.36□□□□□ -1.07
CPSF3-204ENST00000489403 C17orf112F2Z3M2 114 aa8.36□□□□□ -1.07
CPSF3-204ENST00000489403 UBE2L3P68036 154 aaKnown RBP8.36□□□□□ -1.07
CPSF3-204ENST00000489403 FAM159AQ6UWV7 190 aa8.36□□□□□ -1.07
CPSF3-204ENST00000489403 TXNDC17Q9BRA2 123 aa8.36□□□□□ -1.07
CPSF3-204ENST00000489403 NMES1Q9C002 83 aa8.36□□□□□ -1.07
CPSF3-204ENST00000489403 LOC100131303A0A0U1RQF7 123 aa8.35□□□□□ -1.07
CPSF3-204ENST00000489403 C9JCJ5 164 aa8.35□□□□□ -1.07
CPSF3-204ENST00000489403 CRYGDP07320 174 aa8.35□□□□□ -1.07
CPSF3-204ENST00000489403 GCSHP23434 173 aa8.35□□□□□ -1.07
CPSF3-204ENST00000489403 NAGKQ9UJ70 344 aa8.35□□□□□ -1.07
CPSF3-204ENST00000489403 MYCBP2O75592 4640 aa8.34□□□□□ -1.07
CPSF3-204ENST00000489403 GNRH2O43555 120 aa8.34□□□□□ -1.07
CPSF3-204ENST00000489403 SMR3BP02814 79 aaPredicted RBP8.34□□□□□ -1.07
CPSF3-204ENST00000489403 HAMPP81172 84 aa8.34□□□□□ -1.07
CPSF3-204ENST00000489403 ASAH1Q13510 395 aa8.34□□□□□ -1.07
CPSF3-204ENST00000489403 TDRG1Q3Y452 100 aa8.34□□□□□ -1.07
CPSF3-204ENST00000489403 KHDC3LQ587J8 217 aa8.34□□□□□ -1.07
CPSF3-204ENST00000489403 FFAR4Q5NUL3 377 aa8.34□□□□□ -1.07
CPSF3-204ENST00000489403 MZT2BQ6NZ67 158 aa8.34□□□□□ -1.07
CPSF3-204ENST00000489403 C10orf126Q8N4M7 172 aa8.34□□□□□ -1.07
CPSF3-204ENST00000489403 OR4C5Q8NGB2 326 aa8.34□□□□□ -1.07
CPSF3-204ENST00000489403 TMED6Q8WW62 240 aa8.34□□□□□ -1.07
CPSF3-204ENST00000489403 ATP5SQ99766 215 aa8.34□□□□□ -1.07
CPSF3-204ENST00000489403 IGHV3-16A0A0C4DH30 117 aa8.33□□□□□ -1.08
CPSF3-204ENST00000489403 LRCOL1A6NCL2 159 aa8.33□□□□□ -1.08
CPSF3-204ENST00000489403 M0R2P5 195 aa8.33□□□□□ -1.08
CPSF3-204ENST00000489403 EIF3GO75821 320 aaKnown RBP eCLIP8.33□□□□□ -1.08
CPSF3-204ENST00000489403 TYMSP04818 313 aa8.33□□□□□ -1.08
CPSF3-204ENST00000489403 HYLS1Q96M11 299 aa8.33□□□□□ -1.08
CPSF3-204ENST00000489403 RPH3ALQ9UNE2 315 aa8.33□□□□□ -1.08
CPSF3-204ENST00000489403 IGHV3-38A0A0C4DH36 116 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 174.1 ms