RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 SDC2P34741 201 aa-0.04□□□□□ -2.42
VPS50-216ENST00000484954 NDUFA6P56556 154 aa-0.04□□□□□ -2.42
VPS50-216ENST00000484954 RPL37P61927 97 aaKnown RBP-0.04□□□□□ -2.42
VPS50-216ENST00000484954 FXYD3Q14802 87 aa-0.04□□□□□ -2.42
VPS50-216ENST00000484954 ZNF56Q15929 161 aa-0.04□□□□□ -2.42
VPS50-216ENST00000484954 PPP1R2P3Q6NXS1 205 aa-0.04□□□□□ -2.42
VPS50-216ENST00000484954 SPINK6Q6UWN8 80 aa-0.04□□□□□ -2.42
VPS50-216ENST00000484954 LINC00305Q7Z4B0 112 aa-0.04□□□□□ -2.42
VPS50-216ENST00000484954 ARL17AQ8IVW1 177 aa-0.04□□□□□ -2.42
VPS50-216ENST00000484954 C5orf56Q8N8D9 126 aa-0.04□□□□□ -2.42
VPS50-216ENST00000484954 OR4B1Q8NGF8 309 aa-0.04□□□□□ -2.42
VPS50-216ENST00000484954 OR5H6Q8NGV6 325 aa-0.04□□□□□ -2.42
VPS50-216ENST00000484954 PRELID3AQ96N28 172 aa-0.04□□□□□ -2.42
VPS50-216ENST00000484954 CIB3Q96Q77 187 aaPredicted RBP-0.04□□□□□ -2.42
VPS50-216ENST00000484954 MRPL36Q9P0J6 103 aaKnown RBP-0.04□□□□□ -2.42
VPS50-216ENST00000484954 MPC1Q9Y5U8 109 aa-0.04□□□□□ -2.42
VPS50-216ENST00000484954 PTPN13Q12923 2485 aa-0.04□□□□□ -2.42
VPS50-216ENST00000484954 PKD1L2Q7Z442 2459 aa-0.04□□□□□ -2.42
VPS50-216ENST00000484954 KMT2AQ03164 3969 aa-0.04□□□□□ -2.42
VPS50-216ENST00000484954 RYR3Q15413 4870 aa-0.04□□□□□ -2.42
VPS50-216ENST00000484954 KIAA1107Q9UPP5 1409 aa-0.04□□□□□ -2.42
VPS50-216ENST00000484954 MAP1AP78559 2803 aaPredicted RBP-0.05□□□□□ -2.42
VPS50-216ENST00000484954 RYR1P21817 5038 aa-0.05□□□□□ -2.42
VPS50-216ENST00000484954 UBR5O95071 2799 aaPredicted RBP-0.05□□□□□ -2.42
VPS50-216ENST00000484954 LRP1Q07954 4544 aaKnown RBP-0.05□□□□□ -2.42
VPS50-216ENST00000484954 TPRP12270 2363 aaKnown RBP-0.05□□□□□ -2.42
VPS50-216ENST00000484954 TEP1Q99973 2627 aaKnown RBP-0.05□□□□□ -2.42
VPS50-216ENST00000484954 IGF2P01344 180 aa-0.05□□□□□ -2.42
VPS50-216ENST00000484954 RPL7P18124 248 aaKnown RBP-0.05□□□□□ -2.42
VPS50-216ENST00000484954 EVI2AP22794 236 aa-0.05□□□□□ -2.42
VPS50-216ENST00000484954 RPS3P23396 243 aaKnown RBP eCLIP-0.05□□□□□ -2.42
VPS50-216ENST00000484954 FXYD6P3P58550 94 aa-0.05□□□□□ -2.42
VPS50-216ENST00000484954 MAXP61244 160 aa-0.05□□□□□ -2.42
VPS50-216ENST00000484954 SNRPD3P62318 126 aaKnown RBP-0.05□□□□□ -2.42
VPS50-216ENST00000484954 BLCAPP62952 87 aa-0.05□□□□□ -2.42
VPS50-216ENST00000484954 TRIQKQ629K1 86 aa-0.05□□□□□ -2.42
VPS50-216ENST00000484954 TEX29Q8N6K0 151 aa-0.05□□□□□ -2.42
VPS50-216ENST00000484954 TCTEX1D1Q8N7M0 179 aa-0.05□□□□□ -2.42
VPS50-216ENST00000484954 MORN4Q8NDC4 146 aa-0.05□□□□□ -2.42
VPS50-216ENST00000484954 OR5AK2Q8NH90 309 aa-0.05□□□□□ -2.42
VPS50-216ENST00000484954 THEM6Q8WUY1 208 aa-0.05□□□□□ -2.42
VPS50-216ENST00000484954 PCBD2Q9H0N5 130 aa-0.05□□□□□ -2.42
VPS50-216ENST00000484954 MRPL35Q9NZE8 188 aaKnown RBP-0.05□□□□□ -2.42
VPS50-216ENST00000484954 SMPXQ9UHP9 88 aa-0.05□□□□□ -2.42
VPS50-216ENST00000484954 LAMTOR2Q9Y2Q5 125 aa-0.05□□□□□ -2.42
VPS50-216ENST00000484954 MED31Q9Y3C7 131 aa-0.05□□□□□ -2.42
VPS50-216ENST00000484954 KCPQ6ZWJ8 1503 aa-0.05□□□□□ -2.42
VPS50-216ENST00000484954 CAMSAP2Q08AD1 1489 aa-0.05□□□□□ -2.42
VPS50-216ENST00000484954 HMCN2Q8NDA2 5059 aa-0.05□□□□□ -2.42
VPS50-216ENST00000484954 FAT3Q8TDW7 4589 aa-0.05□□□□□ -2.42
VPS50-216ENST00000484954 CHD9Q3L8U1 2897 aa-0.05□□□□□ -2.42
VPS50-216ENST00000484954 TENM4Q6N022 2769 aa-0.06□□□□□ -2.42
VPS50-216ENST00000484954 NBEAL2Q6ZNJ1 2754 aa-0.06□□□□□ -2.42
VPS50-216ENST00000484954 FLNCQ14315 2725 aa-0.06□□□□□ -2.42
VPS50-216ENST00000484954 EP300Q09472 2414 aaPredicted RBP-0.06□□□□□ -2.42
VPS50-216ENST00000484954 COL12A1Q99715 3063 aa-0.06□□□□□ -2.42
VPS50-216ENST00000484954 A0A096LNT2 108 aa-0.06□□□□□ -2.42
VPS50-216ENST00000484954 TRAV13-1A0A0B4J241 112 aa-0.06□□□□□ -2.42
VPS50-216ENST00000484954 TRBV7-6A0A0J9YX20 115 aa-0.06□□□□□ -2.42
VPS50-216ENST00000484954 C5orf58C9J3I9 102 aa-0.06□□□□□ -2.42
VPS50-216ENST00000484954 E5RI56 91 aa-0.06□□□□□ -2.42
VPS50-216ENST00000484954 IGKCP01834 107 aa-0.06□□□□□ -2.42
VPS50-216ENST00000484954 SAA1P0DJI8 122 aaPredicted RBP-0.06□□□□□ -2.42
VPS50-216ENST00000484954 POLR2HP52434 150 aaKnown RBP-0.06□□□□□ -2.42
VPS50-216ENST00000484954 DNAJB13P59910 316 aa-0.06□□□□□ -2.42
VPS50-216ENST00000484954 SPINK13Q1W4C9 94 aa-0.06□□□□□ -2.42
VPS50-216ENST00000484954 CCSMST1Q4G0I0 132 aa-0.06□□□□□ -2.42
VPS50-216ENST00000484954 LYPD5Q6UWN5 251 aa-0.06□□□□□ -2.42
VPS50-216ENST00000484954 STX12Q86Y82 276 aa-0.06□□□□□ -2.42
VPS50-216ENST00000484954 TSKUQ8WUA8 353 aa-0.06□□□□□ -2.42
VPS50-216ENST00000484954 NAT14Q8WUY8 206 aa-0.06□□□□□ -2.42
VPS50-216ENST00000484954 CCDC32Q9BV29 185 aa-0.06□□□□□ -2.42
VPS50-216ENST00000484954 C19orf12Q9NSK7 152 aa-0.06□□□□□ -2.42
VPS50-216ENST00000484954 CBLN4Q9NTU7 201 aa-0.06□□□□□ -2.42
VPS50-216ENST00000484954 ABCA13Q86UQ4 5058 aa-0.06□□□□□ -2.42
VPS50-216ENST00000484954 ZFYVE26Q68DK2 2539 aa-0.06□□□□□ -2.42
VPS50-216ENST00000484954 CTTNBP2Q8WZ74 1663 aa-0.06□□□□□ -2.42
VPS50-216ENST00000484954 FAM135BQ49AJ0 1406 aa-0.06□□□□□ -2.42
VPS50-216ENST00000484954 FGD6Q6ZV73 1430 aa-0.06□□□□□ -2.42
VPS50-216ENST00000484954 YTHDC2Q9H6S0 1430 aaKnown RBP-0.06□□□□□ -2.42
VPS50-216ENST00000484954 CHD8Q9HCK8 2581 aa-0.06□□□□□ -2.42
VPS50-216ENST00000484954 PIEZO1Q92508 2521 aa-0.07□□□□□ -2.42
VPS50-216ENST00000484954 NCAPD3P42695 1498 aa-0.07□□□□□ -2.42
VPS50-216ENST00000484954 DCHS2Q6V1P9 2916 aa-0.07□□□□□ -2.42
VPS50-216ENST00000484954 CDC42EP2O14613 210 aa-0.07□□□□□ -2.42
VPS50-216ENST00000484954 CRYGSP22914 178 aa-0.07□□□□□ -2.42
VPS50-216ENST00000484954 RHOHQ15669 191 aa-0.07□□□□□ -2.42
VPS50-216ENST00000484954 LXNQ9BS40 222 aa-0.07□□□□□ -2.42
VPS50-216ENST00000484954 TRAPPC2LQ9UL33 140 aa-0.07□□□□□ -2.42
VPS50-216ENST00000484954 HERC1Q15751 4861 aa-0.07□□□□□ -2.42
VPS50-216ENST00000484954 FLNAP21333 2647 aaKnown RBP-0.07□□□□□ -2.42
VPS50-216ENST00000484954 TENM2Q9NT68 2774 aa-0.07□□□□□ -2.42
VPS50-216ENST00000484954 CPDO75976 1380 aa-0.07□□□□□ -2.42
VPS50-216ENST00000484954 POLQO75417 2590 aa-0.07□□□□□ -2.42
VPS50-216ENST00000484954 SETD2Q9BYW2 2564 aaPredicted RBP-0.07□□□□□ -2.42
VPS50-216ENST00000484954 ACANP16112 2415 aa-0.08□□□□□ -2.42
VPS50-216ENST00000484954 N4BP2Q86UW6 1770 aaPredicted RBP-0.08□□□□□ -2.42
VPS50-216ENST00000484954 TRAV16A0A0A6YYK6 109 aaPredicted RBP-0.08□□□□□ -2.42
VPS50-216ENST00000484954 LOC107984640A0A0U1RRK4 108 aa-0.08□□□□□ -2.42
VPS50-216ENST00000484954 TMEM189A5PLL7 270 aa-0.08□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms