RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	AAMDC	Q9H7C9	122 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	TMEM14C	Q9P0S9	112 aa		3.69	□□□□□ -1.82
PTCD3-212	ENST00000477520	SHANK1	Q9Y566	2161 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	TLN1	Q9Y490	2541 aa	Known RBP	3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	TRAV4	A0A0B4J268	109 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	IGHV3-20	A0A0C4DH32	117 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	LOC107984156	A0A0G2JMH3	177 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520		H7C1H1	209 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520		K7ENP7	123 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520		K7ERJ3	54 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	FCGR3B	O75015	233 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	CECR9	P0C854	216 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	CRYGA	P11844	174 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	COX6A1	P12074	109 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	SLC25A16	P16260	332 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	CKS2	P33552	79 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	LOXL3	P58215	753 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	TMEM258	P61165	79 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	HERVK_113	P61574	105 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	ATXN8	Q156A1	80 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	DEFB109B	Q30KR1	87 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	TEX36	Q5VZQ5	186 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	ARL17A	Q8IVW1	177 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	C10orf126	Q8N4M7	172 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	SPATA3	Q8NHX4	192 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	FAM57A	Q8TBR7	257 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	ITLN1	Q8WWA0	313 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	KIR2DL4	Q99706	377 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	CHCHD2	Q9Y6H1	151 aa	Predicted RBP	3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	DMXL2	Q8TDJ6	3036 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	EPG5	Q9HCE0	2579 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	SVIL	O95425	2214 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	PKD1L2	Q7Z442	2459 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	PHF3	Q92576	2039 aa	Known RBP	3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	PIEZO2	Q9H5I5	2752 aa		3.68	□□□□□ -1.82
PTCD3-212	ENST00000477520	FREM2	Q5SZK8	3169 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	TRBV10-2	A0A0K0K1G8	114 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	C12orf77	C9JDV5	145 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520		D6R8Y8	96 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	NDUFC2-KCTD14	E9PQ53	114 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520		F5H768	121 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520		F8VRH5	84 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	LGALS9	O00182	355 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	ATOX1	O00244	68 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	HSPB6	O14558	160 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	TIMM23	O14925	209 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	LINC00694	P0DN24	101 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	WT1	P19544	449 aa	Predicted RBP	3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	GLRX	P35754	106 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	ZNF137P	P52743	207 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	ZNF138	P52744	262 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	SRSF9	Q13242	221 aa	Known RBP eCLIP	3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	FHL3	Q13643	280 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	ALKBH6	Q3KRA9	238 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	RUSC1-AS1	Q66K80	236 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520		Q86TA4	180 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	LINC00643	Q86TS7	51 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	FAM90A1	Q86YD7	464 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	ZCCHC24	Q8N2G6	241 aa	Known RBP	3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520		Q8N8P6	123 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	TMEM116	Q8NCL8	245 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	COPS9	Q8WXC6	57 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	BAALC	Q8WXS3	180 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	DUX3	Q96PT4	197 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	MCRIP2	Q9BUT9	160 aa	Known RBP	3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	C21orf62	Q9NYP8	219 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	PRO1854	Q9UHT4	67 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	DSP	P15924	2871 aa	Known RBP	3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	DNAJC13	O75165	2243 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	FRY	Q5TBA9	3013 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	ARHGAP21	Q5T5U3	1957 aa		3.67	□□□□□ -1.82
PTCD3-212	ENST00000477520	NCKAP5	O14513	1909 aa		3.66	□□□□□ -1.82
PTCD3-212	ENST00000477520	IGKV2D-26	A0A0A0MRZ7	120 aa		3.66	□□□□□ -1.82
PTCD3-212	ENST00000477520		A0A0B4J2C4	111 aa		3.66	□□□□□ -1.82
PTCD3-212	ENST00000477520	LINC00473	A8K010	186 aa		3.66	□□□□□ -1.82
PTCD3-212	ENST00000477520		H3BMM0	161 aa		3.66	□□□□□ -1.82
PTCD3-212	ENST00000477520		K7EM74	188 aa		3.66	□□□□□ -1.82
PTCD3-212	ENST00000477520	UPK2	O00526	184 aa		3.66	□□□□□ -1.82
PTCD3-212	ENST00000477520	TRAC	P01848	142 aa		3.66	□□□□□ -1.82
PTCD3-212	ENST00000477520	CD7	P09564	240 aa		3.66	□□□□□ -1.82
PTCD3-212	ENST00000477520	COX6C	P09669	75 aa		3.66	□□□□□ -1.82
PTCD3-212	ENST00000477520	COX7C	P15954	63 aa		3.66	□□□□□ -1.82
PTCD3-212	ENST00000477520	SSR4	P51571	173 aa		3.66	□□□□□ -1.82
PTCD3-212	ENST00000477520	HERVK_113	P63121	156 aa		3.66	□□□□□ -1.82
PTCD3-212	ENST00000477520	EBI3	Q14213	229 aa		3.66	□□□□□ -1.82
PTCD3-212	ENST00000477520	ATP1A1-AS1	Q5TC04	95 aa		3.66	□□□□□ -1.82
PTCD3-212	ENST00000477520	GAGE2A	Q6NT46	116 aa		3.66	□□□□□ -1.82
PTCD3-212	ENST00000477520	NDUFA11	Q86Y39	141 aa		3.66	□□□□□ -1.82
PTCD3-212	ENST00000477520	RFESD	Q8TAC1	157 aa		3.66	□□□□□ -1.82
PTCD3-212	ENST00000477520	SRSF12	Q8WXF0	261 aa	Known RBP	3.66	□□□□□ -1.82
PTCD3-212	ENST00000477520	UBE2W	Q96B02	151 aa		3.66	□□□□□ -1.82
PTCD3-212	ENST00000477520	ODF3	Q96PU9	254 aa		3.66	□□□□□ -1.82
PTCD3-212	ENST00000477520	CNFN	Q9BYD5	112 aa		3.66	□□□□□ -1.82
PTCD3-212	ENST00000477520	TMEM160	Q9NX00	188 aa		3.66	□□□□□ -1.82
PTCD3-212	ENST00000477520	ZNF580	Q9UK33	172 aa		3.66	□□□□□ -1.82
PTCD3-212	ENST00000477520	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	3.66	□□□□□ -1.82
PTCD3-212	ENST00000477520	COL6A6	A6NMZ7	2263 aa		3.66	□□□□□ -1.82
PTCD3-212	ENST00000477520	MGA	Q8IWI9	3026 aa		3.66	□□□□□ -1.82

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