RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 PPT1P50897 306 aa3.36□□□□□ -1.87
PTPN4-209ENST00000469511 PLP1P60201 277 aa3.36□□□□□ -1.87
PTPN4-209ENST00000469511 KRTAP10-8P60410 259 aa3.36□□□□□ -1.87
PTPN4-209ENST00000469511 AKR1C1Q04828 323 aa3.36□□□□□ -1.87
PTPN4-209ENST00000469511 SLAQ13239 276 aa3.36□□□□□ -1.87
PTPN4-209ENST00000469511 OPCMLQ14982 345 aa3.36□□□□□ -1.87
PTPN4-209ENST00000469511 SPANXN5Q5MJ07 72 aa3.36□□□□□ -1.87
PTPN4-209ENST00000469511 MUC21Q5SSG8 566 aa3.36□□□□□ -1.87
PTPN4-209ENST00000469511 IBA57Q5T440 356 aaKnown RBP3.36□□□□□ -1.87
PTPN4-209ENST00000469511 GPR107Q5VW38 600 aa3.36□□□□□ -1.87
PTPN4-209ENST00000469511 NHLRC2Q8NBF2 726 aa3.36□□□□□ -1.87
PTPN4-209ENST00000469511 OR10G4Q8NGN3 311 aa3.36□□□□□ -1.87
PTPN4-209ENST00000469511 TMEM37Q8WXS4 190 aa3.36□□□□□ -1.87
PTPN4-209ENST00000469511 ODF3Q96PU9 254 aa3.36□□□□□ -1.87
PTPN4-209ENST00000469511 TXNDC17Q9BRA2 123 aa3.36□□□□□ -1.87
PTPN4-209ENST00000469511 SLC25A31Q9H0C2 315 aa3.36□□□□□ -1.87
PTPN4-209ENST00000469511 ARV1Q9H2C2 271 aa3.36□□□□□ -1.87
PTPN4-209ENST00000469511 MTFP1Q9UDX5 166 aa3.36□□□□□ -1.87
PTPN4-209ENST00000469511 Q9UF83 564 aa3.36□□□□□ -1.87
PTPN4-209ENST00000469511 C14orf166Q9Y224 244 aaKnown RBP3.36□□□□□ -1.87
PTPN4-209ENST00000469511 IGKV2-40A0A087WW87 121 aaPredicted RBP3.35□□□□□ -1.87
PTPN4-209ENST00000469511 SMCO3A2RU48 225 aa3.35□□□□□ -1.87
PTPN4-209ENST00000469511 IGKV2D-40P01614 121 aaPredicted RBP3.35□□□□□ -1.87
PTPN4-209ENST00000469511 ORM1P02763 201 aa3.35□□□□□ -1.87
PTPN4-209ENST00000469511 OR4E1P0C645 316 aa3.35□□□□□ -1.87
PTPN4-209ENST00000469511 IGLC2P0DOY2 106 aa3.35□□□□□ -1.87
PTPN4-209ENST00000469511 GABARAPL2P60520 117 aa3.35□□□□□ -1.87
PTPN4-209ENST00000469511 RRAS2P62070 204 aaPredicted RBP3.35□□□□□ -1.87
PTPN4-209ENST00000469511 RAB11AP62491 216 aa3.35□□□□□ -1.87
PTPN4-209ENST00000469511 SLC38A11Q08AI6 406 aa3.35□□□□□ -1.87
PTPN4-209ENST00000469511 GAGE1Q13065 139 aa3.35□□□□□ -1.87
PTPN4-209ENST00000469511 GAGE4Q13068 117 aa3.35□□□□□ -1.87
PTPN4-209ENST00000469511 NEDD8Q15843 81 aa3.35□□□□□ -1.87
PTPN4-209ENST00000469511 ACOT6Q3I5F7 207 aaPredicted RBP3.35□□□□□ -1.87
PTPN4-209ENST00000469511 LCN15Q6UWW0 184 aa3.35□□□□□ -1.87
PTPN4-209ENST00000469511 LINC00305Q7Z4B0 112 aa3.35□□□□□ -1.87
PTPN4-209ENST00000469511 TMEM229BQ8NBD8 167 aa3.35□□□□□ -1.87
PTPN4-209ENST00000469511 PCNPQ8WW12 178 aaKnown RBP3.35□□□□□ -1.87
PTPN4-209ENST00000469511 LINC01600Q96MT4 127 aa3.35□□□□□ -1.87
PTPN4-209ENST00000469511 SLC50A1Q9BRV3 221 aa3.35□□□□□ -1.87
PTPN4-209ENST00000469511 PAXXQ9BUH6 204 aa3.35□□□□□ -1.87
PTPN4-209ENST00000469511 VCXQ9H320 206 aa3.35□□□□□ -1.87
PTPN4-209ENST00000469511 RPH3ALQ9UNE2 315 aa3.35□□□□□ -1.87
PTPN4-209ENST00000469511 IGHV3-73A0A0B4J1V6 119 aa3.34□□□□□ -1.87
PTPN4-209ENST00000469511 TRAV8-6A0A0B4J262 113 aa3.34□□□□□ -1.87
PTPN4-209ENST00000469511 A0A0B4J2A0 478 aa3.34□□□□□ -1.87
PTPN4-209ENST00000469511 SMIM31A0A1B0GVY4 71 aa3.34□□□□□ -1.87
PTPN4-209ENST00000469511 GNRH2O43555 120 aa3.34□□□□□ -1.87
PTPN4-209ENST00000469511 B3GALNT1O75752 331 aa3.34□□□□□ -1.87
PTPN4-209ENST00000469511 APOA1P02647 267 aa3.34□□□□□ -1.87
PTPN4-209ENST00000469511 GPX1P07203 203 aa3.34□□□□□ -1.87
PTPN4-209ENST00000469511 GATA1P15976 413 aaPredicted RBP3.34□□□□□ -1.87
PTPN4-209ENST00000469511 CRISP2P16562 243 aa3.34□□□□□ -1.87
PTPN4-209ENST00000469511 AKR1C4P17516 323 aa3.34□□□□□ -1.87
PTPN4-209ENST00000469511 ATP5IP56385 69 aaPredicted RBP3.34□□□□□ -1.87
PTPN4-209ENST00000469511 ARL16Q0P5N6 197 aa3.34□□□□□ -1.87
PTPN4-209ENST00000469511 ASAH1Q13510 395 aa3.34□□□□□ -1.87
PTPN4-209ENST00000469511 LAGE3Q14657 143 aa3.34□□□□□ -1.87
PTPN4-209ENST00000469511 IZUMO2Q6UXV1 221 aa3.34□□□□□ -1.87
PTPN4-209ENST00000469511 DPPA3Q6W0C5 159 aa3.34□□□□□ -1.87
PTPN4-209ENST00000469511 EXOC3-AS1Q8N2X6 119 aa3.34□□□□□ -1.87
PTPN4-209ENST00000469511 SLC25A29Q8N8R3 303 aa3.34□□□□□ -1.87
PTPN4-209ENST00000469511 Q8N976 141 aa3.34□□□□□ -1.87
PTPN4-209ENST00000469511 Q8TAT8 98 aa3.34□□□□□ -1.87
PTPN4-209ENST00000469511 RAB2BQ8WUD1 216 aa3.34□□□□□ -1.87
PTPN4-209ENST00000469511 RASL10AQ92737 203 aa3.34□□□□□ -1.87
PTPN4-209ENST00000469511 SOSTQ9BQB4 213 aa3.34□□□□□ -1.87
PTPN4-209ENST00000469511 SHPKQ9UHJ6 478 aa3.34□□□□□ -1.87
PTPN4-209ENST00000469511 BLOC1S6Q9UL45 172 aa3.34□□□□□ -1.87
PTPN4-209ENST00000469511 IGKV2D-24A0A075B6R9 120 aa3.33□□□□□ -1.88
PTPN4-209ENST00000469511 TRAV4A0A0B4J268 109 aa3.33□□□□□ -1.88
PTPN4-209ENST00000469511 FAM25AB3EWG3 89 aa3.33□□□□□ -1.88
PTPN4-209ENST00000469511 FAM25CB3EWG5 89 aa3.33□□□□□ -1.88
PTPN4-209ENST00000469511 FAM25GB3EWG6 89 aa3.33□□□□□ -1.88
PTPN4-209ENST00000469511 C9JCJ5 164 aa3.33□□□□□ -1.88
PTPN4-209ENST00000469511 CTDSP2O14595 271 aa3.33□□□□□ -1.88
PTPN4-209ENST00000469511 SYNGR2O43760 224 aa3.33□□□□□ -1.88
PTPN4-209ENST00000469511 CXCL2P19875 107 aa3.33□□□□□ -1.88
PTPN4-209ENST00000469511 TAS2R19P59542 299 aa3.33□□□□□ -1.88
PTPN4-209ENST00000469511 SEC61BP60468 96 aaKnown RBP3.33□□□□□ -1.88
PTPN4-209ENST00000469511 UBE2MP61081 183 aaKnown RBP3.33□□□□□ -1.88
PTPN4-209ENST00000469511 NCS1P62166 190 aa3.33□□□□□ -1.88
PTPN4-209ENST00000469511 TMEM183BQ1AE95 376 aa3.33□□□□□ -1.88
PTPN4-209ENST00000469511 BPIFA4PQ86YQ2 179 aa3.33□□□□□ -1.88
PTPN4-209ENST00000469511 TMEM183AQ8IXX5 376 aa3.33□□□□□ -1.88
PTPN4-209ENST00000469511 OR4C5Q8NGB2 326 aa3.33□□□□□ -1.88
PTPN4-209ENST00000469511 OR51S1Q8NGJ8 323 aa3.33□□□□□ -1.88
PTPN4-209ENST00000469511 YIPF6Q96EC8 236 aa3.33□□□□□ -1.88
PTPN4-209ENST00000469511 EXTL2Q9UBQ6 330 aa3.33□□□□□ -1.88
PTPN4-209ENST00000469511 PXMP4Q9Y6I8 212 aa3.33□□□□□ -1.88
PTPN4-209ENST00000469511 TRAV8-3A0A0A6YYJ7 113 aa3.32□□□□□ -1.88
PTPN4-209ENST00000469511 A0A0J9YXV3 536 aa3.32□□□□□ -1.88
PTPN4-209ENST00000469511 AGPAT2O15120 278 aa3.32□□□□□ -1.88
PTPN4-209ENST00000469511 PRSS1P07477 247 aa3.32□□□□□ -1.88
PTPN4-209ENST00000469511 CHTF8P0CG12 524 aa3.32□□□□□ -1.88
PTPN4-209ENST00000469511 PYYP10082 97 aa3.32□□□□□ -1.88
PTPN4-209ENST00000469511 TBPP20226 339 aa3.32□□□□□ -1.88
PTPN4-209ENST00000469511 VBP1P61758 197 aa3.32□□□□□ -1.88
PTPN4-209ENST00000469511 POLR2GP62487 172 aaKnown RBP eCLIP3.32□□□□□ -1.88
PTPN4-209ENST00000469511 CTF1Q16619 201 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 107.2 ms