RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 MUC21Q5SSG8 566 aa14.4□□□□□ -0.1
COL9A3-207ENST00000467819 WDR61Q9GZS3 305 aaKnown RBP14.4□□□□□ -0.1
COL9A3-207ENST00000467819 KCNIP2Q9NS61 270 aa14.4□□□□□ -0.1
COL9A3-207ENST00000467819 HHLA3Q9XRX5 114 aa14.4□□□□□ -0.1
COL9A3-207ENST00000467819 TNFRSF18Q9Y5U5 241 aa14.4□□□□□ -0.1
COL9A3-207ENST00000467819 PRAF2O60831 178 aa14.39□□□□□ -0.11
COL9A3-207ENST00000467819 FUSP35637 526 aaKnown RBP eCLIP14.39□□□□□ -0.11
COL9A3-207ENST00000467819 SLAQ13239 276 aa14.39□□□□□ -0.11
COL9A3-207ENST00000467819 ASAH1Q13510 395 aa14.39□□□□□ -0.11
COL9A3-207ENST00000467819 FHL2Q14192 279 aa14.39□□□□□ -0.11
COL9A3-207ENST00000467819 H0YIZ8 118 aa14.38□□□□□ -0.11
COL9A3-207ENST00000467819 CSN1S1P47710 185 aa14.38□□□□□ -0.11
COL9A3-207ENST00000467819 RANP62826 216 aaKnown RBP14.38□□□□□ -0.11
COL9A3-207ENST00000467819 MRPL23Q16540 153 aaKnown RBP14.38□□□□□ -0.11
COL9A3-207ENST00000467819 LYPD5Q6UWN5 251 aa14.38□□□□□ -0.11
COL9A3-207ENST00000467819 ENKURQ8TC29 256 aa14.38□□□□□ -0.11
COL9A3-207ENST00000467819 NMES1Q9C002 83 aa14.38□□□□□ -0.11
COL9A3-207ENST00000467819 TRGV4A0A0C4DH28 118 aa14.37□□□□□ -0.11
COL9A3-207ENST00000467819 C17orf112F2Z3M2 114 aa14.37□□□□□ -0.11
COL9A3-207ENST00000467819 ERVFC1-1P60608 527 aa14.37□□□□□ -0.11
COL9A3-207ENST00000467819 UBE2L3P68036 154 aaKnown RBP14.37□□□□□ -0.11
COL9A3-207ENST00000467819 MDFICQ9P1T7 246 aa14.37□□□□□ -0.11
COL9A3-207ENST00000467819 TRBV7-9A0A0J9YWB2 115 aa14.36□□□□□ -0.11
COL9A3-207ENST00000467819 EREGO14944 169 aa14.36□□□□□ -0.11
COL9A3-207ENST00000467819 SFTA3P0C7M3 94 aa14.36□□□□□ -0.11
COL9A3-207ENST00000467819 ZNF266Q14584 549 aa14.36□□□□□ -0.11
COL9A3-207ENST00000467819 NEGR1Q7Z3B1 354 aa14.36□□□□□ -0.11
COL9A3-207ENST00000467819 RBAKDNA6NC62 111 aa14.35□□□□□ -0.11
COL9A3-207ENST00000467819 TMEM183BQ1AE95 376 aa14.35□□□□□ -0.11
COL9A3-207ENST00000467819 TMEM183AQ8IXX5 376 aa14.35□□□□□ -0.11
COL9A3-207ENST00000467819 ZNF479Q96JC4 524 aa14.35□□□□□ -0.11
COL9A3-207ENST00000467819 FFAR4Q5NUL3 377 aa14.34□□□□□ -0.11
COL9A3-207ENST00000467819 LYPD1Q8N2G4 141 aa14.34□□□□□ -0.11
COL9A3-207ENST00000467819 S100ZQ8WXG8 99 aa14.34□□□□□ -0.11
COL9A3-207ENST00000467819 ATP5SQ99766 215 aa14.34□□□□□ -0.11
COL9A3-207ENST00000467819 PGPEP1Q9NXJ5 209 aa14.34□□□□□ -0.11
COL9A3-207ENST00000467819 K7EQD1 137 aa14.33□□□□□ -0.12
COL9A3-207ENST00000467819 DNAH10OSP0CZ25 163 aa14.33□□□□□ -0.12
COL9A3-207ENST00000467819 SRIP30626 198 aa14.33□□□□□ -0.12
COL9A3-207ENST00000467819 CYCSP99999 105 aaKnown RBP14.33□□□□□ -0.12
COL9A3-207ENST00000467819 FAM159AQ6UWV7 190 aa14.33□□□□□ -0.12
COL9A3-207ENST00000467819 NFE4Q86UQ8 179 aa14.33□□□□□ -0.12
COL9A3-207ENST00000467819 HYLS1Q96M11 299 aa14.33□□□□□ -0.12
COL9A3-207ENST00000467819 NAGKQ9UJ70 344 aa14.33□□□□□ -0.12
COL9A3-207ENST00000467819 RPH3ALQ9UNE2 315 aa14.33□□□□□ -0.12
COL9A3-207ENST00000467819 LY96Q9Y6Y9 160 aa14.33□□□□□ -0.12
COL9A3-207ENST00000467819 DIRC3C9JPN6 131 aa14.32□□□□□ -0.12
COL9A3-207ENST00000467819 EIF3GO75821 320 aaKnown RBP eCLIP14.32□□□□□ -0.12
COL9A3-207ENST00000467819 GYPEP15421 78 aa14.32□□□□□ -0.12
COL9A3-207ENST00000467819 KHDC3LQ587J8 217 aa14.32□□□□□ -0.12
COL9A3-207ENST00000467819 Q6AWC8 147 aa14.32□□□□□ -0.12
COL9A3-207ENST00000467819 WFDC10BQ8IUB3 73 aa14.32□□□□□ -0.12
COL9A3-207ENST00000467819 OR10G4Q8NGN3 311 aa14.32□□□□□ -0.12
COL9A3-207ENST00000467819 PCNPQ8WW12 178 aaKnown RBP14.32□□□□□ -0.12
COL9A3-207ENST00000467819 PTTG2Q9NZH5 202 aa14.32□□□□□ -0.12
COL9A3-207ENST00000467819 TRGV11A0A075B6L2 103 aa14.31□□□□□ -0.12
COL9A3-207ENST00000467819 TRAV9-2A0A087WT02 112 aa14.31□□□□□ -0.12
COL9A3-207ENST00000467819 H2BFSP57053 126 aa14.31□□□□□ -0.12
COL9A3-207ENST00000467819 LINC00299Q6ZSB3 139 aa14.31□□□□□ -0.12
COL9A3-207ENST00000467819 PPP1R1CQ8WVI7 109 aa14.31□□□□□ -0.12
COL9A3-207ENST00000467819 SPXQ9BT56 116 aa14.31□□□□□ -0.12
COL9A3-207ENST00000467819 SMIM3Q9BZL3 60 aa14.31□□□□□ -0.12
COL9A3-207ENST00000467819 HSPB11Q9Y547 144 aa14.31□□□□□ -0.12
COL9A3-207ENST00000467819 LENEPQ9Y5L5 61 aa14.31□□□□□ -0.12
COL9A3-207ENST00000467819 INMT-MINDY4F8WBC2 141 aa14.3□□□□□ -0.12
COL9A3-207ENST00000467819 UPK1BO75841 260 aa14.3□□□□□ -0.12
COL9A3-207ENST00000467819 TAS2R45P59539 299 aa14.3□□□□□ -0.12
COL9A3-207ENST00000467819 IQCF2Q8IXL9 164 aa14.3□□□□□ -0.12
COL9A3-207ENST00000467819 RASL10AQ92737 203 aa14.3□□□□□ -0.12
COL9A3-207ENST00000467819 A0A087WTM6 91 aa14.29□□□□□ -0.12
COL9A3-207ENST00000467819 EPM2AB3EWF7 344 aa14.29□□□□□ -0.12
COL9A3-207ENST00000467819 CDPF1Q6NVV7 123 aa14.29□□□□□ -0.12
COL9A3-207ENST00000467819 SCGB1C1Q8TD33 95 aa14.29□□□□□ -0.12
COL9A3-207ENST00000467819 MSRB1Q9NZV6 116 aa14.29□□□□□ -0.12
COL9A3-207ENST00000467819 FAT1Q14517 4588 aa14.29□□□□□ -0.12
COL9A3-207ENST00000467819 PGPA6NDG6 321 aa14.28□□□□□ -0.12
COL9A3-207ENST00000467819 IFNA5P01569 189 aa14.28□□□□□ -0.12
COL9A3-207ENST00000467819 ORM1P02763 201 aa14.28□□□□□ -0.12
COL9A3-207ENST00000467819 CMTM2Q8TAZ6 248 aa14.28□□□□□ -0.12
COL9A3-207ENST00000467819 OTORQ9NRC9 128 aa14.28□□□□□ -0.12
COL9A3-207ENST00000467819 TRAV4A0A0B4J268 109 aa14.27□□□□□ -0.13
COL9A3-207ENST00000467819 MPC2O95563 127 aa14.27□□□□□ -0.13
COL9A3-207ENST00000467819 EVI2AP22794 236 aa14.27□□□□□ -0.13
COL9A3-207ENST00000467819 IFITM3Q01628 133 aa14.27□□□□□ -0.13
COL9A3-207ENST00000467819 OR4C5Q8NGB2 326 aa14.27□□□□□ -0.13
COL9A3-207ENST00000467819 TMED6Q8WW62 240 aa14.27□□□□□ -0.13
COL9A3-207ENST00000467819 TXNDC17Q9BRA2 123 aa14.27□□□□□ -0.13
COL9A3-207ENST00000467819 LOC100131303A0A0U1RQF7 123 aa14.26□□□□□ -0.13
COL9A3-207ENST00000467819 C9JCJ5 164 aa14.26□□□□□ -0.13
COL9A3-207ENST00000467819 F6UZH7 168 aa14.26□□□□□ -0.13
COL9A3-207ENST00000467819 GNRH2O43555 120 aa14.26□□□□□ -0.13
COL9A3-207ENST00000467819 PET100P0DJ07 73 aa14.26□□□□□ -0.13
COL9A3-207ENST00000467819 RPL12P30050 165 aaKnown RBP14.26□□□□□ -0.13
COL9A3-207ENST00000467819 GOLT1AQ6ZVE7 132 aa14.26□□□□□ -0.13
COL9A3-207ENST00000467819 MBD2Q9UBB5 411 aa14.26□□□□□ -0.13
COL9A3-207ENST00000467819 M0R2P5 195 aa14.25□□□□□ -0.13
COL9A3-207ENST00000467819 SSNA1O43805 119 aa14.25□□□□□ -0.13
COL9A3-207ENST00000467819 XGP55808 180 aa14.25□□□□□ -0.13
COL9A3-207ENST00000467819 TDRG1Q3Y452 100 aa14.25□□□□□ -0.13
COL9A3-207ENST00000467819 FAM74A1Q5RGS3 127 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 102.2 ms