RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 U3KQE9 123 aa6.91□□□□□ -1.3
HPS4-209ENST00000466781 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.9□□□□□ -1.3
HPS4-209ENST00000466781 C4orf48Q5BLP8 95 aa6.9□□□□□ -1.3
HPS4-209ENST00000466781 DUX4L9Q6RFH8 374 aaPredicted RBP6.9□□□□□ -1.3
HPS4-209ENST00000466781 C16orf74Q96GX8 76 aa6.9□□□□□ -1.3
HPS4-209ENST00000466781 NCOR1P1Q9H4R4 102 aa6.9□□□□□ -1.3
HPS4-209ENST00000466781 ADAMTS9Q9P2N4 1935 aa6.9□□□□□ -1.3
HPS4-209ENST00000466781 TRBV20-1A0A075B6N2 111 aa6.9□□□□□ -1.3
HPS4-209ENST00000466781 ZNF503-AS2A6NEH8 195 aa6.9□□□□□ -1.3
HPS4-209ENST00000466781 IGHV4-59P01825 116 aa6.9□□□□□ -1.3
HPS4-209ENST00000466781 PIFOQ8TCI5 191 aa6.9□□□□□ -1.3
HPS4-209ENST00000466781 CFHR4Q92496 578 aa6.9□□□□□ -1.3
HPS4-209ENST00000466781 LOC105371267A0A1B0GV96 52 aa6.9□□□□□ -1.3
HPS4-209ENST00000466781 IGHV2-5P01817 119 aa6.9□□□□□ -1.3
HPS4-209ENST00000466781 ZNF124Q15973 351 aa6.9□□□□□ -1.3
HPS4-209ENST00000466781 PLXND1Q9Y4D7 1925 aa6.9□□□□□ -1.3
HPS4-209ENST00000466781 RNASE13Q5GAN3 156 aaKnown RBP6.9□□□□□ -1.31
HPS4-209ENST00000466781 PRR25Q96S07 402 aa6.9□□□□□ -1.31
HPS4-209ENST00000466781 SPTBP11277 2137 aa6.9□□□□□ -1.31
HPS4-209ENST00000466781 FGF6P10767 208 aa6.89□□□□□ -1.31
HPS4-209ENST00000466781 ZNF524Q96C55 264 aa6.89□□□□□ -1.31
HPS4-209ENST00000466781 SPART-AS1P0CW21 52 aa6.89□□□□□ -1.31
HPS4-209ENST00000466781 GTSF1LQ9H1H1 148 aa6.89□□□□□ -1.31
HPS4-209ENST00000466781 COLCA2A8K830 154 aa6.89□□□□□ -1.31
HPS4-209ENST00000466781 IGHV3-30P01768 117 aa6.89□□□□□ -1.31
HPS4-209ENST00000466781 IGHV3-33P01772 117 aa6.89□□□□□ -1.31
HPS4-209ENST00000466781 IGHV3-30-3P0DP02 117 aa6.89□□□□□ -1.31
HPS4-209ENST00000466781 IGHV3-30-5P0DP03 117 aa6.89□□□□□ -1.31
HPS4-209ENST00000466781 GRNP28799 593 aaKnown RBP6.89□□□□□ -1.31
HPS4-209ENST00000466781 SH2D6Q7Z4S9 175 aa6.89□□□□□ -1.31
HPS4-209ENST00000466781 CAMK2N2Q96S95 79 aa6.89□□□□□ -1.31
HPS4-209ENST00000466781 TIMM17AQ99595 171 aa6.89□□□□□ -1.31
HPS4-209ENST00000466781 TPSG1Q9NRR2 321 aa6.89□□□□□ -1.31
HPS4-209ENST00000466781 TINCRA0A1B0GVN0 87 aa6.88□□□□□ -1.31
HPS4-209ENST00000466781 CLPSL1A2RUU4 121 aa6.88□□□□□ -1.31
HPS4-209ENST00000466781 EGR2P11161 476 aaPredicted RBP6.88□□□□□ -1.31
HPS4-209ENST00000466781 UBE2AP49459 152 aa6.88□□□□□ -1.31
HPS4-209ENST00000466781 MRPL23Q16540 153 aaKnown RBP6.88□□□□□ -1.31
HPS4-209ENST00000466781 VOPP1Q96AW1 172 aa6.88□□□□□ -1.31
HPS4-209ENST00000466781 MRPL36Q9P0J6 103 aaKnown RBP6.88□□□□□ -1.31
HPS4-209ENST00000466781 IGLV3-9A0A075B6K5 115 aa6.88□□□□□ -1.31
HPS4-209ENST00000466781 IGHV4-4A0A075B6R2 117 aa6.88□□□□□ -1.31
HPS4-209ENST00000466781 ADORA2A-AS1P86434 159 aa6.88□□□□□ -1.31
HPS4-209ENST00000466781 FOXE3Q13461 319 aa6.88□□□□□ -1.31
HPS4-209ENST00000466781 DEFB136Q30KP8 78 aa6.88□□□□□ -1.31
HPS4-209ENST00000466781 Q6ZR03 302 aa6.88□□□□□ -1.31
HPS4-209ENST00000466781 Q6ZRM9 215 aa6.88□□□□□ -1.31
HPS4-209ENST00000466781 LYL1P12980 280 aa6.88□□□□□ -1.31
HPS4-209ENST00000466781 PYGO2Q9BRQ0 406 aa6.88□□□□□ -1.31
HPS4-209ENST00000466781 ETV2O00321 342 aaPredicted RBP6.88□□□□□ -1.31
HPS4-209ENST00000466781 ARID1AO14497 2285 aa6.88□□□□□ -1.31
HPS4-209ENST00000466781 SLURP1P55000 103 aa6.88□□□□□ -1.31
HPS4-209ENST00000466781 SLC25A29Q8N8R3 303 aa6.88□□□□□ -1.31
HPS4-209ENST00000466781 ZNF318Q5VUA4 2279 aa6.87□□□□□ -1.31
HPS4-209ENST00000466781 ARHGEF17Q96PE2 2063 aaPredicted RBP6.87□□□□□ -1.31
HPS4-209ENST00000466781 SHISA9B4DS77 424 aa6.87□□□□□ -1.31
HPS4-209ENST00000466781 ATP5G1P05496 136 aa6.87□□□□□ -1.31
HPS4-209ENST00000466781 GYPEP15421 78 aa6.87□□□□□ -1.31
HPS4-209ENST00000466781 FHL1Q13642 323 aa6.87□□□□□ -1.31
HPS4-209ENST00000466781 MRPL52Q86TS9 123 aaKnown RBP6.87□□□□□ -1.31
HPS4-209ENST00000466781 APRG1Q8IVJ8 170 aa6.87□□□□□ -1.31
HPS4-209ENST00000466781 CARD19Q96LW7 228 aa6.87□□□□□ -1.31
HPS4-209ENST00000466781 SPANXDQ9BXN6 97 aa6.87□□□□□ -1.31
HPS4-209ENST00000466781 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.87□□□□□ -1.31
HPS4-209ENST00000466781 IGKV2-29A2NJV5 120 aaPredicted RBP6.87□□□□□ -1.31
HPS4-209ENST00000466781 K7EQD1 137 aa6.87□□□□□ -1.31
HPS4-209ENST00000466781 ORMDL1Q9P0S3 153 aa6.87□□□□□ -1.31
HPS4-209ENST00000466781 IGLV1-44P01699 117 aa6.87□□□□□ -1.31
HPS4-209ENST00000466781 TRACP01848 142 aa6.87□□□□□ -1.31
HPS4-209ENST00000466781 PRSS57Q6UWY2 283 aa6.87□□□□□ -1.31
HPS4-209ENST00000466781 C20orf78Q9BR46 151 aa6.87□□□□□ -1.31
HPS4-209ENST00000466781 NOTCH4Q99466 2003 aa6.87□□□□□ -1.31
HPS4-209ENST00000466781 NDUFB1O75438 58 aa6.87□□□□□ -1.31
HPS4-209ENST00000466781 Q0VG73 95 aa6.87□□□□□ -1.31
HPS4-209ENST00000466781 OBSL1O75147 1896 aa6.87□□□□□ -1.31
HPS4-209ENST00000466781 FUSP35637 526 aaKnown RBP eCLIP6.87□□□□□ -1.31
HPS4-209ENST00000466781 BVES-AS1Q5T3Y7 98 aa6.87□□□□□ -1.31
HPS4-209ENST00000466781 BOD1L2Q8IYS8 172 aa6.86□□□□□ -1.31
HPS4-209ENST00000466781 SIGLEC8Q9NYZ4 499 aa6.86□□□□□ -1.31
HPS4-209ENST00000466781 HERV-K104P63124 156 aa6.86□□□□□ -1.31
HPS4-209ENST00000466781 UBE2V1Q13404 147 aa6.86□□□□□ -1.31
HPS4-209ENST00000466781 IGFBPL1Q8WX77 278 aa6.86□□□□□ -1.31
HPS4-209ENST00000466781 ZC2HC1AQ96GY0 325 aa6.86□□□□□ -1.31
HPS4-209ENST00000466781 TM2D2Q9BX73 214 aa6.86□□□□□ -1.31
HPS4-209ENST00000466781 SPANXA1Q9NS26 97 aa6.86□□□□□ -1.31
HPS4-209ENST00000466781 IGKV1-6A0A0C4DH72 117 aa6.86□□□□□ -1.31
HPS4-209ENST00000466781 RNF152Q8N8N0 203 aa6.86□□□□□ -1.31
HPS4-209ENST00000466781 J3QQQ9 107 aa6.86□□□□□ -1.31
HPS4-209ENST00000466781 CEND1Q8N111 149 aa6.86□□□□□ -1.31
HPS4-209ENST00000466781 C18orf32Q8TCD1 76 aa6.86□□□□□ -1.31
HPS4-209ENST00000466781 A0A1W2PNU3 283 aaPredicted RBP6.85□□□□□ -1.31
HPS4-209ENST00000466781 WDR86Q86TI4 376 aa6.85□□□□□ -1.31
HPS4-209ENST00000466781 FANCD2OSQ96PS1 177 aa6.85□□□□□ -1.31
HPS4-209ENST00000466781 SNRNP200O75643 2136 aaKnown RBP6.85□□□□□ -1.31
HPS4-209ENST00000466781 IGHV2-70P01814 119 aa6.85□□□□□ -1.31
HPS4-209ENST00000466781 ATP6V0E2Q8NHE4 81 aa6.85□□□□□ -1.31
HPS4-209ENST00000466781 PRO1854Q9UHT4 67 aa6.85□□□□□ -1.31
HPS4-209ENST00000466781 SVILO95425 2214 aa6.85□□□□□ -1.31
HPS4-209ENST00000466781 SMIM27A0A1W2PRY6 76 aa6.85□□□□□ -1.31
HPS4-209ENST00000466781 DLEU1O43261 78 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms