RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 TMEM204Q9BSN7 226 aa4.05□□□□□ -1.76
VPS41-209ENST00000457055 KLK5Q9Y337 293 aaPredicted RBP4.05□□□□□ -1.76
VPS41-209ENST00000457055 DOCK4Q8N1I0 1966 aa4.05□□□□□ -1.76
VPS41-209ENST00000457055 ATMQ13315 3056 aa4.05□□□□□ -1.76
VPS41-209ENST00000457055 FBN2P35556 2912 aa4.04□□□□□ -1.76
VPS41-209ENST00000457055 AHCTF1Q8WYP5 2266 aa4.04□□□□□ -1.76
VPS41-209ENST00000457055 HELZP42694 1942 aaKnown RBP4.04□□□□□ -1.76
VPS41-209ENST00000457055 TRBV5-3A0A0A0MS03 114 aa4.04□□□□□ -1.76
VPS41-209ENST00000457055 IGHV4-28A0A0C4DH34 117 aa4.04□□□□□ -1.76
VPS41-209ENST00000457055 TRBV5-4A0A0C4DH59 114 aa4.04□□□□□ -1.76
VPS41-209ENST00000457055 OR1I1O60431 355 aa4.04□□□□□ -1.76
VPS41-209ENST00000457055 TCL1BO95988 128 aa4.04□□□□□ -1.76
VPS41-209ENST00000457055 SRP19P09132 144 aaKnown RBP4.04□□□□□ -1.76
VPS41-209ENST00000457055 VDAC1P21796 283 aa4.04□□□□□ -1.76
VPS41-209ENST00000457055 S100A4P26447 101 aaKnown RBP4.04□□□□□ -1.76
VPS41-209ENST00000457055 CD52P31358 61 aa4.04□□□□□ -1.76
VPS41-209ENST00000457055 ATP5EP56381 51 aaPredicted RBP4.04□□□□□ -1.76
VPS41-209ENST00000457055 RPL23P62829 140 aaKnown RBP4.04□□□□□ -1.76
VPS41-209ENST00000457055 RBMY1FQ15415 496 aaKnown RBP4.04□□□□□ -1.76
VPS41-209ENST00000457055 MPV17LQ2QL34 196 aa4.04□□□□□ -1.76
VPS41-209ENST00000457055 TMEM155Q4W5P6 130 aa4.04□□□□□ -1.76
VPS41-209ENST00000457055 EBLN2Q6P2I7 272 aa4.04□□□□□ -1.76
VPS41-209ENST00000457055 GFRALQ6UXV0 394 aa4.04□□□□□ -1.76
VPS41-209ENST00000457055 PHF5AQ7RTV0 110 aaKnown RBP4.04□□□□□ -1.76
VPS41-209ENST00000457055 ZNF584Q8IVC4 421 aa4.04□□□□□ -1.76
VPS41-209ENST00000457055 NKAPP1Q8N9T2 125 aa4.04□□□□□ -1.76
VPS41-209ENST00000457055 MYOZ3Q8TDC0 251 aa4.04□□□□□ -1.76
VPS41-209ENST00000457055 CHCHD5Q9BSY4 110 aa4.04□□□□□ -1.76
VPS41-209ENST00000457055 CHAC1Q9BUX1 264 aa4.04□□□□□ -1.76
VPS41-209ENST00000457055 DPH3P1Q9H4G8 78 aa4.04□□□□□ -1.76
VPS41-209ENST00000457055 IL36RNQ9UBH0 155 aa4.04□□□□□ -1.76
VPS41-209ENST00000457055 TP73-AS1Q9UF72 201 aa4.04□□□□□ -1.76
VPS41-209ENST00000457055 KNTC1P50748 2209 aa4.03□□□□□ -1.76
VPS41-209ENST00000457055 NOTCH2Q04721 2471 aa4.03□□□□□ -1.76
VPS41-209ENST00000457055 POLQO75417 2590 aa4.03□□□□□ -1.76
VPS41-209ENST00000457055 NXPH4O95158 308 aa4.03□□□□□ -1.76
VPS41-209ENST00000457055 IGLV3-27P01718 113 aa4.03□□□□□ -1.76
VPS41-209ENST00000457055 HBDP02042 147 aa4.03□□□□□ -1.76
VPS41-209ENST00000457055 SMIM13P0DJ93 91 aa4.03□□□□□ -1.76
VPS41-209ENST00000457055 INAFM2P0DMQ5 153 aa4.03□□□□□ -1.76
VPS41-209ENST00000457055 DYNLT3P51808 116 aa4.03□□□□□ -1.76
VPS41-209ENST00000457055 CXCL6P80162 114 aa4.03□□□□□ -1.76
VPS41-209ENST00000457055 TMEM136Q6ZRR5 245 aa4.03□□□□□ -1.76
VPS41-209ENST00000457055 SH2D6Q7Z4S9 175 aa4.03□□□□□ -1.76
VPS41-209ENST00000457055 SBSPONQ8IVN8 264 aa4.03□□□□□ -1.76
VPS41-209ENST00000457055 ZNF491Q8N8L2 437 aa4.03□□□□□ -1.76
VPS41-209ENST00000457055 VSIG2Q96IQ7 327 aa4.03□□□□□ -1.76
VPS41-209ENST00000457055 FAM218AQ96MZ4 157 aa4.03□□□□□ -1.76
VPS41-209ENST00000457055 TMEM243Q9BU79 118 aa4.03□□□□□ -1.76
VPS41-209ENST00000457055 MUC22E2RYF6 1773 aaPredicted RBP4.03□□□□□ -1.76
VPS41-209ENST00000457055 HCFC1P51610 2035 aa4.03□□□□□ -1.76
VPS41-209ENST00000457055 DOCK9Q9BZ29 2069 aa4.02□□□□□ -1.77
VPS41-209ENST00000457055 ICE1Q9Y2F5 2266 aa4.02□□□□□ -1.77
VPS41-209ENST00000457055 IGKV1D-43A0A0B4J1Z2 117 aa4.02□□□□□ -1.77
VPS41-209ENST00000457055 UBE2L5PA0A1B0GUS4 154 aa4.02□□□□□ -1.77
VPS41-209ENST00000457055 INS-IGF2F8WCM5 200 aa4.02□□□□□ -1.77
VPS41-209ENST00000457055 IGKV1-5P01602 117 aa4.02□□□□□ -1.77
VPS41-209ENST00000457055 HSPB1P04792 205 aaKnown RBP4.02□□□□□ -1.77
VPS41-209ENST00000457055 CD7P09564 240 aa4.02□□□□□ -1.77
VPS41-209ENST00000457055 IGHV4-30-4P0DP06 118 aa4.02□□□□□ -1.77
VPS41-209ENST00000457055 MT3P25713 68 aa4.02□□□□□ -1.77
VPS41-209ENST00000457055 SSR2P43308 183 aa4.02□□□□□ -1.77
VPS41-209ENST00000457055 CSRP3P50461 194 aa4.02□□□□□ -1.77
VPS41-209ENST00000457055 DAPP51397 102 aa4.02□□□□□ -1.77
VPS41-209ENST00000457055 KRTDAPP60985 99 aa4.02□□□□□ -1.77
VPS41-209ENST00000457055 UBE2L3P68036 154 aaKnown RBP4.02□□□□□ -1.77
VPS41-209ENST00000457055 FUT5Q11128 374 aa4.02□□□□□ -1.77
VPS41-209ENST00000457055 KIAA0087Q14695 138 aa4.02□□□□□ -1.77
VPS41-209ENST00000457055 ZC2HC1BQ5TFG8 222 aa4.02□□□□□ -1.77
VPS41-209ENST00000457055 HMGN2P46Q86SG4 172 aa4.02□□□□□ -1.77
VPS41-209ENST00000457055 MDP1Q86V88 176 aa4.02□□□□□ -1.77
VPS41-209ENST00000457055 Q8N976 141 aa4.02□□□□□ -1.77
VPS41-209ENST00000457055 OR8B3Q8NGG8 313 aa4.02□□□□□ -1.77
VPS41-209ENST00000457055 TSKUQ8WUA8 353 aa4.02□□□□□ -1.77
VPS41-209ENST00000457055 MSRB1Q9NZV6 116 aa4.02□□□□□ -1.77
VPS41-209ENST00000457055 PRO0461Q9UI25 63 aa4.02□□□□□ -1.77
VPS41-209ENST00000457055 EPDR1Q9UM22 224 aa4.02□□□□□ -1.77
VPS41-209ENST00000457055 HHLA3Q9XRX5 114 aa4.02□□□□□ -1.77
VPS41-209ENST00000457055 ZNF706Q9Y5V0 76 aaPredicted RBP4.02□□□□□ -1.77
VPS41-209ENST00000457055 SLC25A15Q9Y619 301 aa4.02□□□□□ -1.77
VPS41-209ENST00000457055 PTPRDP23468 1912 aa4.01□□□□□ -1.77
VPS41-209ENST00000457055 IGKV1-8A0A0C4DH67 115 aa4.01□□□□□ -1.77
VPS41-209ENST00000457055 TMEM272A0A1B0GTI8 110 aa4.01□□□□□ -1.77
VPS41-209ENST00000457055 K7ERJ3 54 aa4.01□□□□□ -1.77
VPS41-209ENST00000457055 SOD1P00441 154 aa4.01□□□□□ -1.77
VPS41-209ENST00000457055 HLA-DPB1P04440 258 aa4.01□□□□□ -1.77
VPS41-209ENST00000457055 ELK1P19419 428 aa4.01□□□□□ -1.77
VPS41-209ENST00000457055 COL8A2P25067 703 aa4.01□□□□□ -1.77
VPS41-209ENST00000457055 ZNF138P52744 262 aa4.01□□□□□ -1.77
VPS41-209ENST00000457055 SYNJ2BPP57105 145 aa4.01□□□□□ -1.77
VPS41-209ENST00000457055 IGFBP7Q16270 282 aa4.01□□□□□ -1.77
VPS41-209ENST00000457055 LINC00303Q3SY05 128 aa4.01□□□□□ -1.77
VPS41-209ENST00000457055 FAM78AQ5JUQ0 283 aa4.01□□□□□ -1.77
VPS41-209ENST00000457055 C1orf100Q5SVJ3 147 aa4.01□□□□□ -1.77
VPS41-209ENST00000457055 ZNF678Q5SXM1 525 aa4.01□□□□□ -1.77
VPS41-209ENST00000457055 LINC00173Q6ZV60 143 aa4.01□□□□□ -1.77
VPS41-209ENST00000457055 SPATA12Q7Z6I5 190 aa4.01□□□□□ -1.77
VPS41-209ENST00000457055 OR5AS1Q8N127 324 aa4.01□□□□□ -1.77
VPS41-209ENST00000457055 FGFBP2Q9BYJ0 223 aa4.01□□□□□ -1.77
VPS41-209ENST00000457055 CST11Q9H112 138 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms