RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 CCL21O00585 134 aa9.51□□□□□ -0.89
HMGB1-206ENST00000405805 ZNF688P0C7X2 276 aa9.51□□□□□ -0.89
HMGB1-206ENST00000405805 Q6ZS92 163 aa9.51□□□□□ -0.89
HMGB1-206ENST00000405805 MBD3L2Q8NHZ7 208 aaPredicted RBP9.51□□□□□ -0.89
HMGB1-206ENST00000405805 SIGLEC9Q9Y336 463 aa9.51□□□□□ -0.89
HMGB1-206ENST00000405805 A0A0G2JNJ9 132 aa9.5□□□□□ -0.89
HMGB1-206ENST00000405805 SEM1Q6ZVN7 128 aa9.5□□□□□ -0.89
HMGB1-206ENST00000405805 TMEM75Q8N9X5 138 aa9.5□□□□□ -0.89
HMGB1-206ENST00000405805 C8orf49Q96NF6 230 aa9.5□□□□□ -0.89
HMGB1-206ENST00000405805 Q9UFV3 132 aa9.5□□□□□ -0.89
HMGB1-206ENST00000405805 FNDC10F2Z333 226 aa9.5□□□□□ -0.89
HMGB1-206ENST00000405805 CTRLP40313 264 aa9.5□□□□□ -0.89
HMGB1-206ENST00000405805 SCGB3A1Q96QR1 104 aa9.5□□□□□ -0.89
HMGB1-206ENST00000405805 OTORQ9NRC9 128 aa9.5□□□□□ -0.89
HMGB1-206ENST00000405805 TRAV40A0A0B4J280 105 aa9.5□□□□□ -0.89
HMGB1-206ENST00000405805 PRSS46E5RG02 174 aa9.5□□□□□ -0.89
HMGB1-206ENST00000405805 IGLV2-8P01709 118 aa9.5□□□□□ -0.89
HMGB1-206ENST00000405805 HTN1P15515 57 aa9.5□□□□□ -0.89
HMGB1-206ENST00000405805 TCTEX1D4Q5JR98 221 aa9.5□□□□□ -0.89
HMGB1-206ENST00000405805 IGHV3-64A0A075B6Q5 118 aa9.49□□□□□ -0.89
HMGB1-206ENST00000405805 IGHV1-3A0A0C4DH29 117 aa9.49□□□□□ -0.89
HMGB1-206ENST00000405805 C2orf82Q6UX34 121 aa9.49□□□□□ -0.89
HMGB1-206ENST00000405805 NXT2Q9NPJ8 142 aaKnown RBP9.49□□□□□ -0.89
HMGB1-206ENST00000405805 NACAE9PAV3 2078 aa9.49□□□□□ -0.89
HMGB1-206ENST00000405805 GTSF1Q8WW33 167 aa9.49□□□□□ -0.89
HMGB1-206ENST00000405805 DKK2Q9UBU2 259 aa9.49□□□□□ -0.89
HMGB1-206ENST00000405805 ASPMQ8IZT6 3477 aa9.49□□□□□ -0.89
HMGB1-206ENST00000405805 INSL3P51460 131 aa9.49□□□□□ -0.89
HMGB1-206ENST00000405805 C12orf74Q32Q52 190 aa9.49□□□□□ -0.89
HMGB1-206ENST00000405805 Q86TA4 180 aa9.49□□□□□ -0.89
HMGB1-206ENST00000405805 NTN5Q8WTR8 489 aaPredicted RBP9.49□□□□□ -0.89
HMGB1-206ENST00000405805 NPIPB6E9PJ23 425 aa9.48□□□□□ -0.89
HMGB1-206ENST00000405805 ATP5LO75964 103 aa9.48□□□□□ -0.89
HMGB1-206ENST00000405805 GATA3P23771 443 aa9.48□□□□□ -0.89
HMGB1-206ENST00000405805 SCRT2Q9NQ03 307 aa9.48□□□□□ -0.89
HMGB1-206ENST00000405805 C21orf62Q9NYP8 219 aa9.48□□□□□ -0.89
HMGB1-206ENST00000405805 CTSZQ9UBR2 303 aa9.48□□□□□ -0.89
HMGB1-206ENST00000405805 TMEM8BA6NDV4 472 aa9.48□□□□□ -0.89
HMGB1-206ENST00000405805 M0R381 172 aa9.48□□□□□ -0.89
HMGB1-206ENST00000405805 SPRY2O43597 315 aa9.48□□□□□ -0.89
HMGB1-206ENST00000405805 FOXI1Q12951 378 aa9.48□□□□□ -0.89
HMGB1-206ENST00000405805 IGF2BP2-AS1Q96M15 143 aa9.48□□□□□ -0.89
HMGB1-206ENST00000405805 PKIGQ9Y2B9 76 aa9.48□□□□□ -0.89
HMGB1-206ENST00000405805 CCDC168Q8NDH2 2452 aa9.48□□□□□ -0.89
HMGB1-206ENST00000405805 ADAMTS20P59510 1910 aa9.48□□□□□ -0.89
HMGB1-206ENST00000405805 NPC2P61916 151 aa9.48□□□□□ -0.89
HMGB1-206ENST00000405805 FOXI2Q6ZQN5 318 aa9.48□□□□□ -0.89
HMGB1-206ENST00000405805 Q6ZUT4 128 aa9.48□□□□□ -0.89
HMGB1-206ENST00000405805 ATP5L2Q7Z4Y8 100 aa9.48□□□□□ -0.89
HMGB1-206ENST00000405805 DPM3Q9P2X0 92 aa9.48□□□□□ -0.89
HMGB1-206ENST00000405805 IGLV3-9A0A075B6K5 115 aa9.47□□□□□ -0.89
HMGB1-206ENST00000405805 IGLL5B9A064 214 aa9.47□□□□□ -0.89
HMGB1-206ENST00000405805 HLA-DMBP28068 263 aa9.47□□□□□ -0.89
HMGB1-206ENST00000405805 KIR2DL4Q99706 377 aa9.47□□□□□ -0.89
HMGB1-206ENST00000405805 RAB1BQ9H0U4 201 aa9.47□□□□□ -0.89
HMGB1-206ENST00000405805 ERG28Q9UKR5 140 aa9.47□□□□□ -0.89
HMGB1-206ENST00000405805 LOXP28300 417 aaPredicted RBP9.47□□□□□ -0.89
HMGB1-206ENST00000405805 SRSF2Q01130 221 aaKnown RBP9.47□□□□□ -0.89
HMGB1-206ENST00000405805 ZNF833PQ6ZTB9 187 aa9.47□□□□□ -0.89
HMGB1-206ENST00000405805 LHBP01229 141 aa9.46□□□□□ -0.89
HMGB1-206ENST00000405805 TRGV9Q99603 122 aa9.46□□□□□ -0.89
HMGB1-206ENST00000405805 USP9XQ93008 2570 aaPredicted RBP9.46□□□□□ -0.89
HMGB1-206ENST00000405805 TET2Q6N021 2002 aaPredicted RBP9.46□□□□□ -0.9
HMGB1-206ENST00000405805 A0A0U1RRA0 63 aa9.46□□□□□ -0.9
HMGB1-206ENST00000405805 ERCC8Q13216 396 aa9.46□□□□□ -0.9
HMGB1-206ENST00000405805 RUSC1-AS1Q66K80 236 aa9.46□□□□□ -0.9
HMGB1-206ENST00000405805 PRSS33Q8NF86 280 aa9.46□□□□□ -0.9
HMGB1-206ENST00000405805 TMEM101Q96IK0 257 aa9.46□□□□□ -0.9
HMGB1-206ENST00000405805 FAM120AOSQ5T036 256 aa9.45□□□□□ -0.9
HMGB1-206ENST00000405805 CLEC19AQ6UXS0 136 aa9.45□□□□□ -0.9
HMGB1-206ENST00000405805 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.45□□□□□ -0.9
HMGB1-206ENST00000405805 Q71RC1 249 aaPredicted RBP9.45□□□□□ -0.9
HMGB1-206ENST00000405805 E7EQL1 145 aa9.45□□□□□ -0.9
HMGB1-206ENST00000405805 CCDC179H3BU77 68 aa9.45□□□□□ -0.9
HMGB1-206ENST00000405805 IGKV3-20P01619 116 aa9.45□□□□□ -0.9
HMGB1-206ENST00000405805 ODF1Q14990 250 aa9.45□□□□□ -0.9
HMGB1-206ENST00000405805 C5orf47Q569G3 176 aa9.45□□□□□ -0.9
HMGB1-206ENST00000405805 HIST1H4AP62805 103 aaKnown RBP9.45□□□□□ -0.9
HMGB1-206ENST00000405805 POU2AF1Q16633 256 aa9.45□□□□□ -0.9
HMGB1-206ENST00000405805 TMEM78Q5T7P6 136 aa9.45□□□□□ -0.9
HMGB1-206ENST00000405805 ADGRG4Q8IZF6 3080 aa9.45□□□□□ -0.9
HMGB1-206ENST00000405805 NBR2O15453 112 aa9.45□□□□□ -0.9
HMGB1-206ENST00000405805 FAM106CPP0CH98 169 aa9.45□□□□□ -0.9
HMGB1-206ENST00000405805 TCF15Q12870 199 aa9.45□□□□□ -0.9
HMGB1-206ENST00000405805 FAM106AQ4KMX7 169 aa9.45□□□□□ -0.9
HMGB1-206ENST00000405805 CEND1Q8N111 149 aa9.45□□□□□ -0.9
HMGB1-206ENST00000405805 DMXL2Q8TDJ6 3036 aa9.45□□□□□ -0.9
HMGB1-206ENST00000405805 BUB1B-PAK6H3BSN5 160 aa9.44□□□□□ -0.9
HMGB1-206ENST00000405805 SH2D1AO60880 128 aa9.44□□□□□ -0.9
HMGB1-206ENST00000405805 DLX6P56179 175 aa9.44□□□□□ -0.9
HMGB1-206ENST00000405805 NDPQ00604 133 aa9.44□□□□□ -0.9
HMGB1-206ENST00000405805 RNF182Q8N6D2 247 aa9.44□□□□□ -0.9
HMGB1-206ENST00000405805 OR10J6PQ8NGY7 276 aa9.44□□□□□ -0.9
HMGB1-206ENST00000405805 C16orf92Q96LL3 132 aa9.44□□□□□ -0.9
HMGB1-206ENST00000405805 TRAV8-3A0A0A6YYJ7 113 aa9.44□□□□□ -0.9
HMGB1-206ENST00000405805 FABP5P3A8MUU1 101 aa9.44□□□□□ -0.9
HMGB1-206ENST00000405805 TMEM30BQ3MIR4 351 aa9.44□□□□□ -0.9
HMGB1-206ENST00000405805 VWC2LB2RUY7 222 aa9.44□□□□□ -0.9
HMGB1-206ENST00000405805 HLA-DRB4P13762 266 aa9.44□□□□□ -0.9
HMGB1-206ENST00000405805 FAM231DQ6ZW35 169 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms