RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 NCR2O95944 276 aa10.24□□□□□ -0.77
CCDC3-202ENST00000378839 Q6AWC8 147 aa10.24□□□□□ -0.77
CCDC3-202ENST00000378839 C8orf86Q6ZUL3 223 aa10.24□□□□□ -0.77
CCDC3-202ENST00000378839 C20orf173Q96LM9 149 aa10.24□□□□□ -0.77
CCDC3-202ENST00000378839 SIGLEC8Q9NYZ4 499 aa10.24□□□□□ -0.77
CCDC3-202ENST00000378839 IGKV3D-20A0A0C4DH25 116 aa10.23□□□□□ -0.77
CCDC3-202ENST00000378839 OR4C46A6NHA9 309 aa10.23□□□□□ -0.77
CCDC3-202ENST00000378839 SCGB2A1O75556 95 aa10.23□□□□□ -0.77
CCDC3-202ENST00000378839 CRIP2P52943 208 aaPredicted RBP10.23□□□□□ -0.77
CCDC3-202ENST00000378839 GPHB5Q86YW7 130 aa10.23□□□□□ -0.77
CCDC3-202ENST00000378839 ZNF843Q8N446 348 aa10.23□□□□□ -0.77
CCDC3-202ENST00000378839 A0A1B0GW15 77 aa10.23□□□□□ -0.77
CCDC3-202ENST00000378839 TRGV3P03979 118 aa10.23□□□□□ -0.77
CCDC3-202ENST00000378839 IGF1P05019 195 aa10.23□□□□□ -0.77
CCDC3-202ENST00000378839 ATP5J2P56134 94 aa10.23□□□□□ -0.77
CCDC3-202ENST00000378839 DEFB1P60022 68 aa10.23□□□□□ -0.77
CCDC3-202ENST00000378839 FER1L6-AS1Q8NA97 138 aa10.23□□□□□ -0.77
CCDC3-202ENST00000378839 RNF185Q96GF1 192 aa10.23□□□□□ -0.77
CCDC3-202ENST00000378839 ORM1P02763 201 aa10.22□□□□□ -0.77
CCDC3-202ENST00000378839 H3BUX3 64 aa10.22□□□□□ -0.77
CCDC3-202ENST00000378839 TWIST1Q15672 202 aa10.22□□□□□ -0.77
CCDC3-202ENST00000378839 ZANQ9Y493 2812 aa10.22□□□□□ -0.77
CCDC3-202ENST00000378839 FOXE3Q13461 319 aa10.22□□□□□ -0.77
CCDC3-202ENST00000378839 PRR9Q5T870 116 aa10.22□□□□□ -0.77
CCDC3-202ENST00000378839 RAB37Q96AX2 223 aa10.22□□□□□ -0.77
CCDC3-202ENST00000378839 METTL26Q96S19 204 aa10.22□□□□□ -0.77
CCDC3-202ENST00000378839 A6NDX4 124 aa10.21□□□□□ -0.77
CCDC3-202ENST00000378839 NPYP01303 97 aa10.21□□□□□ -0.77
CCDC3-202ENST00000378839 IGHV3-11P01762 117 aa10.21□□□□□ -0.77
CCDC3-202ENST00000378839 PRB1P04280 392 aa10.21□□□□□ -0.77
CCDC3-202ENST00000378839 MRPL52Q86TS9 123 aaKnown RBP10.21□□□□□ -0.77
CCDC3-202ENST00000378839 GLMPQ8WWB7 406 aa10.21□□□□□ -0.77
CCDC3-202ENST00000378839 ZNF747Q9BV97 191 aa10.21□□□□□ -0.77
CCDC3-202ENST00000378839 AP5S1Q9NUS5 200 aa10.21□□□□□ -0.77
CCDC3-202ENST00000378839 EDN2P20800 178 aa10.21□□□□□ -0.78
CCDC3-202ENST00000378839 PRELID3AQ96N28 172 aa10.21□□□□□ -0.78
CCDC3-202ENST00000378839 RBAKDNA6NC62 111 aa10.2□□□□□ -0.78
CCDC3-202ENST00000378839 FABP5P3A8MUU1 101 aa10.2□□□□□ -0.78
CCDC3-202ENST00000378839 BMI1P35226 326 aa10.2□□□□□ -0.78
CCDC3-202ENST00000378839 PRSS3P2Q8NHM4 247 aa10.2□□□□□ -0.78
CCDC3-202ENST00000378839 TMEM238C9JI98 176 aa10.2□□□□□ -0.78
CCDC3-202ENST00000378839 LINC01559Q495D7 138 aa10.2□□□□□ -0.78
CCDC3-202ENST00000378839 GAGE12BA1L429 117 aa10.2□□□□□ -0.78
CCDC3-202ENST00000378839 FAM223BA6NKX1 122 aa10.2□□□□□ -0.78
CCDC3-202ENST00000378839 OR5AL1P0C617 328 aa10.2□□□□□ -0.78
CCDC3-202ENST00000378839 ARL3P36405 182 aa10.2□□□□□ -0.78
CCDC3-202ENST00000378839 RAB9AP51151 201 aa10.2□□□□□ -0.78
CCDC3-202ENST00000378839 TM4SF20Q53R12 229 aa10.2□□□□□ -0.78
CCDC3-202ENST00000378839 PRSS57Q6UWY2 283 aa10.2□□□□□ -0.78
CCDC3-202ENST00000378839 FAM223AQ8IWN6 122 aa10.2□□□□□ -0.78
CCDC3-202ENST00000378839 SLC50A1Q9BRV3 221 aa10.2□□□□□ -0.78
CCDC3-202ENST00000378839 TRAV8-6A0A0B4J262 113 aa10.19□□□□□ -0.78
CCDC3-202ENST00000378839 IGHG2P01859 326 aa10.19□□□□□ -0.78
CCDC3-202ENST00000378839 MSMBP08118 114 aa10.19□□□□□ -0.78
CCDC3-202ENST00000378839 GATA1P15976 413 aaPredicted RBP10.19□□□□□ -0.78
CCDC3-202ENST00000378839 SRSF2Q01130 221 aaKnown RBP10.19□□□□□ -0.78
CCDC3-202ENST00000378839 CNFNQ9BYD5 112 aa10.19□□□□□ -0.78
CCDC3-202ENST00000378839 ZNF469Q96JG9 3925 aaPredicted RBP10.19□□□□□ -0.78
CCDC3-202ENST00000378839 ORMDL3Q8N138 153 aa10.19□□□□□ -0.78
CCDC3-202ENST00000378839 TMEM95Q3KNT9 176 aa10.18□□□□□ -0.78
CCDC3-202ENST00000378839 HIF1ANQ9NWT6 349 aa10.18□□□□□ -0.78
CCDC3-202ENST00000378839 KMT2BQ9UMN6 2715 aaPredicted RBP10.18□□□□□ -0.78
CCDC3-202ENST00000378839 LINC01545Q5VT33 79 aa10.18□□□□□ -0.78
CCDC3-202ENST00000378839 FA2HQ7L5A8 372 aa10.18□□□□□ -0.78
CCDC3-202ENST00000378839 MAP1LC3CQ9BXW4 147 aa10.18□□□□□ -0.78
CCDC3-202ENST00000378839 ZFYVE26Q68DK2 2539 aa10.18□□□□□ -0.78
CCDC3-202ENST00000378839 IGHV7-4-1A0A0J9YVY3 117 aa10.18□□□□□ -0.78
CCDC3-202ENST00000378839 K7EP13 123 aa10.18□□□□□ -0.78
CCDC3-202ENST00000378839 NDUFS8O00217 210 aa10.18□□□□□ -0.78
CCDC3-202ENST00000378839 TAX1BP3O14907 124 aa10.18□□□□□ -0.78
CCDC3-202ENST00000378839 RPS20P60866 119 aaKnown RBP10.18□□□□□ -0.78
CCDC3-202ENST00000378839 SOCS3O14543 225 aa10.17□□□□□ -0.78
CCDC3-202ENST00000378839 SPRY2O43597 315 aa10.17□□□□□ -0.78
CCDC3-202ENST00000378839 PET117Q6UWS5 81 aa10.17□□□□□ -0.78
CCDC3-202ENST00000378839 C9orf47Q6ZRZ4 202 aa10.17□□□□□ -0.78
CCDC3-202ENST00000378839 TMEM191AQ9H0A3 160 aa10.17□□□□□ -0.78
CCDC3-202ENST00000378839 CSTL1Q9H114 145 aa10.17□□□□□ -0.78
CCDC3-202ENST00000378839 OR10AG1Q8NH19 301 aa10.17□□□□□ -0.78
CCDC3-202ENST00000378839 POLQO75417 2590 aa10.16□□□□□ -0.78
CCDC3-202ENST00000378839 MYO18BQ8IUG5 2567 aa10.16□□□□□ -0.78
CCDC3-202ENST00000378839 CKS2P33552 79 aa10.16□□□□□ -0.78
CCDC3-202ENST00000378839 C10orf99Q6UWK7 81 aa10.16□□□□□ -0.78
CCDC3-202ENST00000378839 MAPK1IP1LQ8NDC0 245 aa10.16□□□□□ -0.78
CCDC3-202ENST00000378839 HSPB8Q9UJY1 196 aa10.16□□□□□ -0.78
CCDC3-202ENST00000378839 EVI2AP22794 236 aa10.16□□□□□ -0.78
CCDC3-202ENST00000378839 C16orf92Q96LL3 132 aa10.16□□□□□ -0.78
CCDC3-202ENST00000378839 MRPS16Q9Y3D3 137 aaKnown RBP10.16□□□□□ -0.78
CCDC3-202ENST00000378839 NBPF19A0A087WUL8 3843 aa10.16□□□□□ -0.78
CCDC3-202ENST00000378839 CFHR3Q02985 330 aa10.16□□□□□ -0.78
CCDC3-202ENST00000378839 KIR3DS1Q14943 382 aa10.16□□□□□ -0.78
CCDC3-202ENST00000378839 J3KRW8 73 aa10.15□□□□□ -0.78
CCDC3-202ENST00000378839 IGLV1-40P01703 118 aa10.15□□□□□ -0.78
CCDC3-202ENST00000378839 WFDC3Q8IUB2 231 aa10.15□□□□□ -0.78
CCDC3-202ENST00000378839 SCRT2Q9NQ03 307 aa10.15□□□□□ -0.78
CCDC3-202ENST00000378839 A0A096LNT2 108 aa10.15□□□□□ -0.78
CCDC3-202ENST00000378839 F6UB75 175 aa10.15□□□□□ -0.78
CCDC3-202ENST00000378839 PF4V1P10720 104 aa10.15□□□□□ -0.78
CCDC3-202ENST00000378839 TMEM78Q5T7P6 136 aa10.15□□□□□ -0.78
CCDC3-202ENST00000378839 OR4X2Q8NGF9 303 aa10.15□□□□□ -0.78
CCDC3-202ENST00000378839 OR8A1Q8NGG7 326 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms