RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 SMPXQ9UHP9 88 aa0.44□□□□□ -2.34
VPS13A-206ENST00000376646 LAMTOR2Q9Y2Q5 125 aa0.44□□□□□ -2.34
VPS13A-206ENST00000376646 FANCMQ8IYD8 2048 aa0.44□□□□□ -2.34
VPS13A-206ENST00000376646 C5orf58C9J3I9 102 aa0.44□□□□□ -2.34
VPS13A-206ENST00000376646 PGRMC1O00264 195 aaKnown RBP0.44□□□□□ -2.34
VPS13A-206ENST00000376646 PFDN1O60925 122 aa0.44□□□□□ -2.34
VPS13A-206ENST00000376646 MRPS36P82909 103 aaKnown RBP0.44□□□□□ -2.34
VPS13A-206ENST00000376646 GLIPR1L1Q6UWM5 242 aa0.44□□□□□ -2.34
VPS13A-206ENST00000376646 LINC00269Q8N2A0 174 aa0.44□□□□□ -2.34
VPS13A-206ENST00000376646 TEX29Q8N6K0 151 aa0.44□□□□□ -2.34
VPS13A-206ENST00000376646 OR4B1Q8NGF8 309 aa0.44□□□□□ -2.34
VPS13A-206ENST00000376646 OR5H6Q8NGV6 325 aa0.44□□□□□ -2.34
VPS13A-206ENST00000376646 DIRC1Q969H9 104 aa0.44□□□□□ -2.34
VPS13A-206ENST00000376646 MCEEQ96PE7 176 aa0.44□□□□□ -2.34
VPS13A-206ENST00000376646 EFCAB11Q9BUY7 163 aa0.44□□□□□ -2.34
VPS13A-206ENST00000376646 TCEAL2Q9H3H9 227 aaPredicted RBP0.44□□□□□ -2.34
VPS13A-206ENST00000376646 CENPHQ9H3R5 247 aa0.44□□□□□ -2.34
VPS13A-206ENST00000376646 MED12Q93074 2177 aa0.44□□□□□ -2.34
VPS13A-206ENST00000376646 KIAA1107Q9UPP5 1409 aa0.44□□□□□ -2.34
VPS13A-206ENST00000376646 DNHD1Q96M86 4753 aa0.44□□□□□ -2.34
VPS13A-206ENST00000376646 CITO14578 2027 aa0.43□□□□□ -2.34
VPS13A-206ENST00000376646 E7EQ34 232 aa0.43□□□□□ -2.34
VPS13A-206ENST00000376646 IFNA21P01568 189 aa0.43□□□□□ -2.34
VPS13A-206ENST00000376646 IGLV3-1P01715 115 aa0.43□□□□□ -2.34
VPS13A-206ENST00000376646 CD14P08571 375 aa0.43□□□□□ -2.34
VPS13A-206ENST00000376646 NEDD8Q15843 81 aa0.43□□□□□ -2.34
VPS13A-206ENST00000376646 THEM6Q8WUY1 208 aa0.43□□□□□ -2.34
VPS13A-206ENST00000376646 CLEC2BQ92478 149 aa0.43□□□□□ -2.34
VPS13A-206ENST00000376646 PRELID3AQ96N28 172 aa0.43□□□□□ -2.34
VPS13A-206ENST00000376646 TRAPPC2LQ9UL33 140 aa0.43□□□□□ -2.34
VPS13A-206ENST00000376646 MED31Q9Y3C7 131 aa0.43□□□□□ -2.34
VPS13A-206ENST00000376646 ZCCHC11Q5TAX3 1644 aaKnown RBP0.43□□□□□ -2.34
VPS13A-206ENST00000376646 MGAM2Q2M2H8 2515 aa0.43□□□□□ -2.34
VPS13A-206ENST00000376646 TLN2Q9Y4G6 2542 aa0.43□□□□□ -2.34
VPS13A-206ENST00000376646 DLC1Q96QB1 1528 aa0.43□□□□□ -2.34
VPS13A-206ENST00000376646 TCOF1Q13428 1488 aaKnown RBP0.43□□□□□ -2.34
VPS13A-206ENST00000376646 RPL7P18124 248 aaKnown RBP0.43□□□□□ -2.34
VPS13A-206ENST00000376646 NDUFA6P56556 154 aa0.43□□□□□ -2.34
VPS13A-206ENST00000376646 LINC00575Q6W349 94 aa0.43□□□□□ -2.34
VPS13A-206ENST00000376646 LINC00305Q7Z4B0 112 aa0.43□□□□□ -2.34
VPS13A-206ENST00000376646 SBSPONQ8IVN8 264 aa0.43□□□□□ -2.34
VPS13A-206ENST00000376646 CCL4L1Q8NHW4 92 aa0.43□□□□□ -2.34
VPS13A-206ENST00000376646 HSPB8Q9UJY1 196 aa0.43□□□□□ -2.34
VPS13A-206ENST00000376646 A0A0C4DFX4 3053 aa0.43□□□□□ -2.34
VPS13A-206ENST00000376646 ZGRF1Q86YA3 2104 aa0.42□□□□□ -2.34
VPS13A-206ENST00000376646 ZFC3H1O60293 1989 aaKnown RBP0.42□□□□□ -2.34
VPS13A-206ENST00000376646 PTPRDP23468 1912 aa0.42□□□□□ -2.34
VPS13A-206ENST00000376646 RNF213Q63HN8 5207 aa0.42□□□□□ -2.34
VPS13A-206ENST00000376646 ZNF469Q96JG9 3925 aaPredicted RBP0.42□□□□□ -2.34
VPS13A-206ENST00000376646 C3orf85A0A1B0GTC6 90 aa0.42□□□□□ -2.34
VPS13A-206ENST00000376646 A0A1W2PPM0 123 aa0.42□□□□□ -2.34
VPS13A-206ENST00000376646 POLR2HP52434 150 aaKnown RBP0.42□□□□□ -2.34
VPS13A-206ENST00000376646 OCIAD2Q56VL3 154 aa0.42□□□□□ -2.34
VPS13A-206ENST00000376646 SAMD13Q5VXD3 122 aa0.42□□□□□ -2.34
VPS13A-206ENST00000376646 CASC2Q6XLA1 102 aa0.42□□□□□ -2.34
VPS13A-206ENST00000376646 SMIM15Q7Z3B0 74 aa0.42□□□□□ -2.34
VPS13A-206ENST00000376646 OR10AC1Q8NH08 325 aa0.42□□□□□ -2.34
VPS13A-206ENST00000376646 OR5AK2Q8NH90 309 aa0.42□□□□□ -2.34
VPS13A-206ENST00000376646 FKBP11Q9NYL4 201 aa0.42□□□□□ -2.34
VPS13A-206ENST00000376646 MXRA5Q9NR99 2828 aa0.42□□□□□ -2.34
VPS13A-206ENST00000376646 DMBT1Q9UGM3 2413 aaPredicted RBP0.42□□□□□ -2.34
VPS13A-206ENST00000376646 FAM107AO95990 144 aa0.41□□□□□ -2.34
VPS13A-206ENST00000376646 IGHV3-33P01772 117 aa0.41□□□□□ -2.34
VPS13A-206ENST00000376646 TRACP01848 142 aa0.41□□□□□ -2.34
VPS13A-206ENST00000376646 TPT1P13693 172 aaKnown RBP0.41□□□□□ -2.34
VPS13A-206ENST00000376646 MAXP61244 160 aa0.41□□□□□ -2.34
VPS13A-206ENST00000376646 TFAMQ00059 246 aaKnown RBP0.41□□□□□ -2.34
VPS13A-206ENST00000376646 LINC00299Q6ZSB3 139 aa0.41□□□□□ -2.34
VPS13A-206ENST00000376646 CICQ96RK0 1608 aaPredicted RBP0.41□□□□□ -2.34
VPS13A-206ENST00000376646 MTORP42345 2549 aa0.41□□□□□ -2.34
VPS13A-206ENST00000376646 IGF2RP11717 2491 aa0.41□□□□□ -2.34
VPS13A-206ENST00000376646 TPRP12270 2363 aaKnown RBP0.41□□□□□ -2.34
VPS13A-206ENST00000376646 TRAV13-1A0A0B4J241 112 aa0.41□□□□□ -2.34
VPS13A-206ENST00000376646 TRBV27A0A0K0K1C4 114 aa0.41□□□□□ -2.34
VPS13A-206ENST00000376646 NUPR2A6NF83 97 aa0.41□□□□□ -2.34
VPS13A-206ENST00000376646 S100GP29377 79 aa0.41□□□□□ -2.34
VPS13A-206ENST00000376646 FXYD4P59646 89 aa0.41□□□□□ -2.34
VPS13A-206ENST00000376646 TMEM128Q5BJH2 165 aa0.41□□□□□ -2.34
VPS13A-206ENST00000376646 SREK1IP1Q8N9Q2 155 aaPredicted RBP0.41□□□□□ -2.34
VPS13A-206ENST00000376646 LXNQ9BS40 222 aa0.41□□□□□ -2.34
VPS13A-206ENST00000376646 BCL9O00512 1426 aa0.41□□□□□ -2.34
VPS13A-206ENST00000376646 FAM135BQ49AJ0 1406 aa0.41□□□□□ -2.34
VPS13A-206ENST00000376646 USP54Q70EL1 1684 aa0.41□□□□□ -2.34
VPS13A-206ENST00000376646 TENM2Q9NT68 2774 aa0.4□□□□□ -2.34
VPS13A-206ENST00000376646 ZFHX4Q86UP3 3567 aa0.4□□□□□ -2.34
VPS13A-206ENST00000376646 ACANP16112 2415 aa0.4□□□□□ -2.34
VPS13A-206ENST00000376646 LOC107984156A0A0G2JMH3 177 aa0.4□□□□□ -2.34
VPS13A-206ENST00000376646 TRBV7-6A0A0J9YX20 115 aa0.4□□□□□ -2.34
VPS13A-206ENST00000376646 LOC107984640A0A0U1RRK4 108 aa0.4□□□□□ -2.34
VPS13A-206ENST00000376646 H0YJX3 145 aa0.4□□□□□ -2.34
VPS13A-206ENST00000376646 H3BMG7 143 aa0.4□□□□□ -2.34
VPS13A-206ENST00000376646 M0QZK8 103 aa0.4□□□□□ -2.34
VPS13A-206ENST00000376646 ARL17AQ8IVW1 177 aa0.4□□□□□ -2.34
VPS13A-206ENST00000376646 BRK1Q8WUW1 75 aa0.4□□□□□ -2.34
VPS13A-206ENST00000376646 CCDC115Q96NT0 180 aa0.4□□□□□ -2.34
VPS13A-206ENST00000376646 BOKQ9UMX3 212 aaPredicted RBP0.4□□□□□ -2.34
VPS13A-206ENST00000376646 TANC2Q9HCD6 1990 aa0.4□□□□□ -2.35
VPS13A-206ENST00000376646 BPTFQ12830 3046 aa0.4□□□□□ -2.35
VPS13A-206ENST00000376646 A0A0J9YY99 117 aa0.4□□□□□ -2.35
VPS13A-206ENST00000376646 SAA1P0DJI8 122 aaPredicted RBP0.4□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms