RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 H3BUA1 57 aa7.08□□□□□ -1.28
ATG4A-202ENST00000345734 BUB3O43684 328 aa7.08□□□□□ -1.28
ATG4A-202ENST00000345734 BRI3O95415 125 aa7.08□□□□□ -1.28
ATG4A-202ENST00000345734 SMIM17P0DL12 118 aa7.08□□□□□ -1.28
ATG4A-202ENST00000345734 ESDP10768 282 aa7.08□□□□□ -1.28
ATG4A-202ENST00000345734 ARL3P36405 182 aa7.08□□□□□ -1.28
ATG4A-202ENST00000345734 CTRLP40313 264 aa7.08□□□□□ -1.28
ATG4A-202ENST00000345734 RIPPLY3P57055 190 aa7.08□□□□□ -1.28
ATG4A-202ENST00000345734 PDE6HQ13956 83 aa7.08□□□□□ -1.28
ATG4A-202ENST00000345734 C10orf99Q6UWK7 81 aa7.08□□□□□ -1.28
ATG4A-202ENST00000345734 LINC00322Q6ZN03 302 aaPredicted RBP7.08□□□□□ -1.28
ATG4A-202ENST00000345734 IL17RELQ6ZVW7 336 aa7.08□□□□□ -1.28
ATG4A-202ENST00000345734 PRNTQ86SH4 94 aa7.08□□□□□ -1.28
ATG4A-202ENST00000345734 Q86TA4 180 aa7.08□□□□□ -1.28
ATG4A-202ENST00000345734 LYPD1Q8N2G4 141 aa7.08□□□□□ -1.28
ATG4A-202ENST00000345734 FAM110AQ9BQ89 295 aa7.08□□□□□ -1.28
ATG4A-202ENST00000345734 PAM16Q9Y3D7 125 aa7.08□□□□□ -1.28
ATG4A-202ENST00000345734 DIRC3C9JPN6 131 aa7.07□□□□□ -1.28
ATG4A-202ENST00000345734 SPINK4O60575 86 aa7.07□□□□□ -1.28
ATG4A-202ENST00000345734 HLA-DMBP28068 263 aa7.07□□□□□ -1.28
ATG4A-202ENST00000345734 USMG5Q96IX5 58 aa7.07□□□□□ -1.28
ATG4A-202ENST00000345734 METTL26Q96S19 204 aa7.07□□□□□ -1.28
ATG4A-202ENST00000345734 VPREB3Q9UKI3 123 aa7.07□□□□□ -1.28
ATG4A-202ENST00000345734 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.07□□□□□ -1.28
ATG4A-202ENST00000345734 RAB9AP51151 201 aa7.07□□□□□ -1.28
ATG4A-202ENST00000345734 SLC35B1P78383 322 aa7.07□□□□□ -1.28
ATG4A-202ENST00000345734 UNQ9165/PRO28630Q6UXU0 137 aa7.07□□□□□ -1.28
ATG4A-202ENST00000345734 FAM231DQ6ZW35 169 aa7.07□□□□□ -1.28
ATG4A-202ENST00000345734 OR4X2Q8NGF9 303 aa7.07□□□□□ -1.28
ATG4A-202ENST00000345734 DUX5Q96PT3 197 aa7.07□□□□□ -1.28
ATG4A-202ENST00000345734 SMIM27A0A1W2PRY6 76 aa7.06□□□□□ -1.28
ATG4A-202ENST00000345734 GAGE12BA1L429 117 aa7.06□□□□□ -1.28
ATG4A-202ENST00000345734 IGHG4P01861 327 aa7.06□□□□□ -1.28
ATG4A-202ENST00000345734 IGLC3P0DOY3 106 aa7.06□□□□□ -1.28
ATG4A-202ENST00000345734 PSG9Q00887 426 aa7.06□□□□□ -1.28
ATG4A-202ENST00000345734 Q6ZN92 141 aa7.06□□□□□ -1.28
ATG4A-202ENST00000345734 TMEM75Q8N9X5 138 aa7.06□□□□□ -1.28
ATG4A-202ENST00000345734 AAMDCQ9H7C9 122 aa7.06□□□□□ -1.28
ATG4A-202ENST00000345734 TRAV26-1A0A087WT03 109 aa7.06□□□□□ -1.28
ATG4A-202ENST00000345734 CBLN1P23435 193 aa7.06□□□□□ -1.28
ATG4A-202ENST00000345734 TDRG1Q3Y452 100 aa7.06□□□□□ -1.28
ATG4A-202ENST00000345734 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.06□□□□□ -1.28
ATG4A-202ENST00000345734 CITED2Q99967 270 aaPredicted RBP7.06□□□□□ -1.28
ATG4A-202ENST00000345734 PSG8Q9UQ74 426 aa7.06□□□□□ -1.28
ATG4A-202ENST00000345734 TRAPPC1Q9Y5R8 145 aa7.06□□□□□ -1.28
ATG4A-202ENST00000345734 TRAV9-1A0A075B6T8 112 aa7.05□□□□□ -1.28
ATG4A-202ENST00000345734 IGKV2-40A0A087WW87 121 aaPredicted RBP7.05□□□□□ -1.28
ATG4A-202ENST00000345734 TRBV6-1A0A0K0K1D8 114 aa7.05□□□□□ -1.28
ATG4A-202ENST00000345734 OR11H12B2RN74 326 aa7.05□□□□□ -1.28
ATG4A-202ENST00000345734 IGKV2D-40P01614 121 aaPredicted RBP7.05□□□□□ -1.28
ATG4A-202ENST00000345734 PSMB8P28062 276 aa7.05□□□□□ -1.28
ATG4A-202ENST00000345734 SIGLECL1Q8N7X8 197 aa7.05□□□□□ -1.28
ATG4A-202ENST00000345734 OR11H1Q8NG94 326 aa7.05□□□□□ -1.28
ATG4A-202ENST00000345734 OR11H2Q8NH07 326 aa7.05□□□□□ -1.28
ATG4A-202ENST00000345734 GRAMD2BQ96HH9 432 aa7.05□□□□□ -1.28
ATG4A-202ENST00000345734 ZNF702PQ9H963 129 aa7.05□□□□□ -1.28
ATG4A-202ENST00000345734 ZNF331Q9NQX6 463 aaPredicted RBP7.05□□□□□ -1.28
ATG4A-202ENST00000345734 ZNF580Q9UK33 172 aa7.05□□□□□ -1.28
ATG4A-202ENST00000345734 MTORP42345 2549 aa7.04□□□□□ -1.28
ATG4A-202ENST00000345734 A0A087X0K7 114 aa7.04□□□□□ -1.28
ATG4A-202ENST00000345734 A0A0G2JLM5 398 aa7.04□□□□□ -1.28
ATG4A-202ENST00000345734 C19orf71A6NCJ1 209 aa7.04□□□□□ -1.28
ATG4A-202ENST00000345734 K7EQM0 130 aa7.04□□□□□ -1.28
ATG4A-202ENST00000345734 CHEK1O14757 476 aa7.04□□□□□ -1.28
ATG4A-202ENST00000345734 CSN1S1P47710 185 aa7.04□□□□□ -1.28
ATG4A-202ENST00000345734 CKS1BP61024 79 aa7.04□□□□□ -1.28
ATG4A-202ENST00000345734 RNF182Q8N6D2 247 aa7.04□□□□□ -1.28
ATG4A-202ENST00000345734 ZC2HC1AQ96GY0 325 aa7.04□□□□□ -1.28
ATG4A-202ENST00000345734 PRSS22Q9GZN4 317 aa7.04□□□□□ -1.28
ATG4A-202ENST00000345734 ZNF492Q9P255 531 aa7.04□□□□□ -1.28
ATG4A-202ENST00000345734 PRAC2D3DTV9 90 aa7.04□□□□□ -1.28
ATG4A-202ENST00000345734 NDUFA4O00483 81 aa7.04□□□□□ -1.28
ATG4A-202ENST00000345734 ZNF253O75346 499 aa7.04□□□□□ -1.28
ATG4A-202ENST00000345734 TSPAN13O95857 204 aa7.04□□□□□ -1.28
ATG4A-202ENST00000345734 SPATA45Q537H7 98 aa7.04□□□□□ -1.28
ATG4A-202ENST00000345734 MRPL54Q6P161 138 aaKnown RBP7.04□□□□□ -1.28
ATG4A-202ENST00000345734 FER1L6-AS1Q8NA97 138 aa7.04□□□□□ -1.28
ATG4A-202ENST00000345734 TMEM190Q8WZ59 177 aa7.04□□□□□ -1.28
ATG4A-202ENST00000345734 C8orf49Q96NF6 230 aa7.04□□□□□ -1.28
ATG4A-202ENST00000345734 SIGMAR1Q99720 223 aa7.04□□□□□ -1.28
ATG4A-202ENST00000345734 PEF1Q9UBV8 284 aaKnown RBP7.04□□□□□ -1.28
ATG4A-202ENST00000345734 TRAV8-2A0A0B4J237 113 aa7.03□□□□□ -1.28
ATG4A-202ENST00000345734 IZUMO1RA6ND01 250 aa7.03□□□□□ -1.28
ATG4A-202ENST00000345734 P01737 135 aa7.03□□□□□ -1.28
ATG4A-202ENST00000345734 TSPOP30536 169 aa7.03□□□□□ -1.28
ATG4A-202ENST00000345734 LCN12Q6JVE5 192 aa7.03□□□□□ -1.28
ATG4A-202ENST00000345734 NUP35Q8NFH5 326 aa7.03□□□□□ -1.28
ATG4A-202ENST00000345734 TSKUQ8WUA8 353 aa7.03□□□□□ -1.28
ATG4A-202ENST00000345734 VGLL1Q99990 258 aa7.03□□□□□ -1.28
ATG4A-202ENST00000345734 RPP21Q9H633 154 aaKnown RBP7.03□□□□□ -1.28
ATG4A-202ENST00000345734 NOTCH2Q04721 2471 aa7.03□□□□□ -1.28
ATG4A-202ENST00000345734 SNURFLB1AK76 121 aa7.03□□□□□ -1.28
ATG4A-202ENST00000345734 CRIP1P50238 77 aa7.03□□□□□ -1.28
ATG4A-202ENST00000345734 KRTAP1-1Q07627 177 aa7.03□□□□□ -1.28
ATG4A-202ENST00000345734 Q6ZWC4 215 aa7.03□□□□□ -1.28
ATG4A-202ENST00000345734 Q8TAT8 98 aa7.03□□□□□ -1.28
ATG4A-202ENST00000345734 GLMPQ8WWB7 406 aa7.03□□□□□ -1.28
ATG4A-202ENST00000345734 DAZAP1Q96EP5 407 aaKnown RBP7.03□□□□□ -1.28
ATG4A-202ENST00000345734 MRAP2Q96G30 205 aa7.03□□□□□ -1.28
ATG4A-202ENST00000345734 NPFFR1Q9GZQ6 430 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms