RNA–Protein interactions for RNA: ENST00000340437.8

CPSF7-201, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 1 (best) BASIC

Gene CPSF7, Length 3,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-201ENST00000340437 RNF5Q99942 180 aa11.18□□□□□ -0.62
CPSF7-201ENST00000340437 RPL24P83731 157 aaKnown RBP11.18□□□□□ -0.62
CPSF7-201ENST00000340437 TMEM219Q86XT9 240 aa11.18□□□□□ -0.62
CPSF7-201ENST00000340437 TNFRSF6BO95407 300 aa11.17□□□□□ -0.62
CPSF7-201ENST00000340437 TRGV3P03979 118 aa11.17□□□□□ -0.62
CPSF7-201ENST00000340437 ZFP36P26651 326 aaKnown RBP11.17□□□□□ -0.62
CPSF7-201ENST00000340437 IGKV2D-26A0A0A0MRZ7 120 aa11.17□□□□□ -0.62
CPSF7-201ENST00000340437 PDE6HQ13956 83 aa11.17□□□□□ -0.62
CPSF7-201ENST00000340437 SCGB2A1O75556 95 aa11.16□□□□□ -0.62
CPSF7-201ENST00000340437 PRTN3P24158 256 aa11.16□□□□□ -0.62
CPSF7-201ENST00000340437 SPANXN1Q5VSR9 72 aa11.16□□□□□ -0.62
CPSF7-201ENST00000340437 ZNF493Q6ZR52 646 aa11.16□□□□□ -0.62
CPSF7-201ENST00000340437 LGALS9BQ3B8N2 356 aa11.16□□□□□ -0.62
CPSF7-201ENST00000340437 LGALS9CQ6DKI2 356 aa11.16□□□□□ -0.62
CPSF7-201ENST00000340437 GTF2H5Q6ZYL4 71 aa11.16□□□□□ -0.62
CPSF7-201ENST00000340437 IGHV7-81A0A0B4J1V7 117 aa11.16□□□□□ -0.62
CPSF7-201ENST00000340437 K7ERU9 68 aa11.16□□□□□ -0.62
CPSF7-201ENST00000340437 FGF6P10767 208 aa11.16□□□□□ -0.62
CPSF7-201ENST00000340437 SPCS1Q9Y6A9 102 aa11.16□□□□□ -0.62
CPSF7-201ENST00000340437 ATP6V0E1O15342 81 aa11.15□□□□□ -0.62
CPSF7-201ENST00000340437 NDUFA3O95167 84 aa11.15□□□□□ -0.62
CPSF7-201ENST00000340437 SEC11AP67812 179 aa11.15□□□□□ -0.62
CPSF7-201ENST00000340437 OR11H6Q8NGC7 330 aa11.15□□□□□ -0.62
CPSF7-201ENST00000340437 OR2K2Q8NGT1 345 aa11.15□□□□□ -0.62
CPSF7-201ENST00000340437 ZC2HC1BQ5TFG8 222 aa11.15□□□□□ -0.62
CPSF7-201ENST00000340437 DTX2Q86UW9 622 aa11.15□□□□□ -0.62
CPSF7-201ENST00000340437 NPBQ8NG41 125 aa11.15□□□□□ -0.62
CPSF7-201ENST00000340437 TRAV40A0A0B4J280 105 aa11.15□□□□□ -0.62
CPSF7-201ENST00000340437 FLNCQ14315 2725 aa11.15□□□□□ -0.62
CPSF7-201ENST00000340437 LCNL1Q6ZST4 164 aa11.15□□□□□ -0.62
CPSF7-201ENST00000340437 GLMPQ8WWB7 406 aa11.15□□□□□ -0.62
CPSF7-201ENST00000340437 NHP2Q9NX24 153 aaKnown RBP11.15□□□□□ -0.62
CPSF7-201ENST00000340437 HRNRQ86YZ3 2850 aaPredicted RBP11.14□□□□□ -0.63
CPSF7-201ENST00000340437 GOSR1O95249 250 aa11.14□□□□□ -0.63
CPSF7-201ENST00000340437 IGHG4P01861 327 aa11.14□□□□□ -0.63
CPSF7-201ENST00000340437 CCDC144NLQ6NUI1 221 aa11.14□□□□□ -0.63
CPSF7-201ENST00000340437 SMIM15Q7Z3B0 74 aa11.14□□□□□ -0.63
CPSF7-201ENST00000340437 FASNP49327 2511 aaKnown RBP11.14□□□□□ -0.63
CPSF7-201ENST00000340437 TRBV6-1A0A0K0K1D8 114 aa11.14□□□□□ -0.63
CPSF7-201ENST00000340437 M0R381 172 aa11.14□□□□□ -0.63
CPSF7-201ENST00000340437 EFNA4P52798 201 aa11.14□□□□□ -0.63
CPSF7-201ENST00000340437 TMEM78Q5T7P6 136 aa11.14□□□□□ -0.63
CPSF7-201ENST00000340437 BOD1L2Q8IYS8 172 aa11.14□□□□□ -0.63
CPSF7-201ENST00000340437 MAPK1IP1LQ8NDC0 245 aa11.14□□□□□ -0.63
CPSF7-201ENST00000340437 WFDC12Q8WWY7 111 aa11.14□□□□□ -0.63
CPSF7-201ENST00000340437 AGPAT4-IT1Q9H0P7 198 aa11.14□□□□□ -0.63
CPSF7-201ENST00000340437 CELSR1Q9NYQ6 3014 aa11.14□□□□□ -0.63
CPSF7-201ENST00000340437 C9orf118A6NHY6 69 aa11.14□□□□□ -0.63
CPSF7-201ENST00000340437 H3BVH4 76 aa11.14□□□□□ -0.63
CPSF7-201ENST00000340437 HSD52Q0P140 79 aa11.14□□□□□ -0.63
CPSF7-201ENST00000340437 CRYBG3Q68DQ2 2970 aa11.14□□□□□ -0.63
CPSF7-201ENST00000340437 MTURNQ8N3F0 131 aa11.14□□□□□ -0.63
CPSF7-201ENST00000340437 TTC9CQ8N5M4 171 aa11.14□□□□□ -0.63
CPSF7-201ENST00000340437 SRSF8Q9BRL6 282 aaKnown RBP11.14□□□□□ -0.63
CPSF7-201ENST00000340437 RPS20P60866 119 aaKnown RBP11.13□□□□□ -0.63
CPSF7-201ENST00000340437 PAX2Q02962 417 aa11.13□□□□□ -0.63
CPSF7-201ENST00000340437 RNF185Q96GF1 192 aa11.13□□□□□ -0.63
CPSF7-201ENST00000340437 TMEM8BA6NDV4 472 aa11.13□□□□□ -0.63
CPSF7-201ENST00000340437 FXYD2P54710 66 aa11.13□□□□□ -0.63
CPSF7-201ENST00000340437 BRD3OSQ6XYD6 125 aa11.13□□□□□ -0.63
CPSF7-201ENST00000340437 LY6G5BQ8NDX9 201 aa11.13□□□□□ -0.63
CPSF7-201ENST00000340437 C11orf21Q9P2W6 132 aa11.13□□□□□ -0.63
CPSF7-201ENST00000340437 IGF1P05019 195 aa11.13□□□□□ -0.63
CPSF7-201ENST00000340437 C16orf92Q96LL3 132 aa11.12□□□□□ -0.63
CPSF7-201ENST00000340437 SMIM17P0DL12 118 aa11.12□□□□□ -0.63
CPSF7-201ENST00000340437 COL25A1Q9BXS0 654 aaPredicted RBP11.12□□□□□ -0.63
CPSF7-201ENST00000340437 IGHV3-11P01762 117 aa11.12□□□□□ -0.63
CPSF7-201ENST00000340437 IGKCP01834 107 aa11.12□□□□□ -0.63
CPSF7-201ENST00000340437 S100A4P26447 101 aaKnown RBP11.12□□□□□ -0.63
CPSF7-201ENST00000340437 FN1P02751 2386 aaKnown RBP11.11□□□□□ -0.63
CPSF7-201ENST00000340437 IGKV3D-20A0A0C4DH25 116 aa11.11□□□□□ -0.63
CPSF7-201ENST00000340437 H3BRM9 83 aa11.11□□□□□ -0.63
CPSF7-201ENST00000340437 IGLC6P0CF74 106 aa11.11□□□□□ -0.63
CPSF7-201ENST00000340437 SMIM13P0DJ93 91 aa11.11□□□□□ -0.63
CPSF7-201ENST00000340437 SFTA2Q6UW10 78 aa11.11□□□□□ -0.63
CPSF7-201ENST00000340437 Q8N9W7 124 aa11.11□□□□□ -0.63
CPSF7-201ENST00000340437 MYOZ3Q8TDC0 251 aa11.11□□□□□ -0.63
CPSF7-201ENST00000340437 MRPL35Q9NZE8 188 aaKnown RBP11.11□□□□□ -0.63
CPSF7-201ENST00000340437 U3KQK5 164 aa11.11□□□□□ -0.63
CPSF7-201ENST00000340437 MGPP08493 103 aa11.11□□□□□ -0.63
CPSF7-201ENST00000340437 FABP2P12104 132 aa11.11□□□□□ -0.63
CPSF7-201ENST00000340437 OR1N2Q8NGR9 330 aa11.11□□□□□ -0.63
CPSF7-201ENST00000340437 MSRB2Q9Y3D2 182 aa11.11□□□□□ -0.63
CPSF7-201ENST00000340437 SRD5A1P18405 259 aa11.11□□□□□ -0.63
CPSF7-201ENST00000340437 SAA4P35542 130 aa11.11□□□□□ -0.63
CPSF7-201ENST00000340437 SAMD5Q5TGI4 173 aa11.1□□□□□ -0.63
CPSF7-201ENST00000340437 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.1□□□□□ -0.63
CPSF7-201ENST00000340437 OR9G4Q8NGQ1 327 aa11.1□□□□□ -0.63
CPSF7-201ENST00000340437 BUB3O43684 328 aa11.1□□□□□ -0.63
CPSF7-201ENST00000340437 OR4X2Q8NGF9 303 aa11.1□□□□□ -0.63
CPSF7-201ENST00000340437 AGRNO00468 2067 aa11.1□□□□□ -0.63
CPSF7-201ENST00000340437 M0R1W7 72 aa11.1□□□□□ -0.63
CPSF7-201ENST00000340437 HTN1P15515 57 aa11.1□□□□□ -0.63
CPSF7-201ENST00000340437 ADAMTSL5Q6ZMM2 481 aa11.1□□□□□ -0.63
CPSF7-201ENST00000340437 METTL26Q96S19 204 aa11.1□□□□□ -0.63
CPSF7-201ENST00000340437 CHAC1Q9BUX1 264 aa11.1□□□□□ -0.63
CPSF7-201ENST00000340437 ODF3BA8MYP8 253 aa11.09□□□□□ -0.63
CPSF7-201ENST00000340437 ODF1Q14990 250 aa11.09□□□□□ -0.63
CPSF7-201ENST00000340437 KHDC1LQ5JSQ8 128 aa11.09□□□□□ -0.63
CPSF7-201ENST00000340437 K7ENP7 123 aa11.08□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms