RNA–Protein interactions for RNA: ENST00000322213.8

SMC1A-201, Transcript of structural maintenance of chromosomes 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC1A, Length 9,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-201ENST00000322213 DPM3Q9P2X0 92 aa5.68□□□□□ -1.5
SMC1A-201ENST00000322213 S4R3C0 116 aa5.68□□□□□ -1.5
SMC1A-201ENST00000322213 TRGV11A0A075B6L2 103 aa5.68□□□□□ -1.5
SMC1A-201ENST00000322213 B9A039 149 aa5.68□□□□□ -1.5
SMC1A-201ENST00000322213 ARRDC1-AS1Q9H2J1 176 aa5.68□□□□□ -1.5
SMC1A-201ENST00000322213 DUX3Q96PT4 197 aa5.68□□□□□ -1.5
SMC1A-201ENST00000322213 C5orf42Q9H799 3197 aa5.68□□□□□ -1.5
SMC1A-201ENST00000322213 TMEM213A2RRL7 107 aa5.68□□□□□ -1.5
SMC1A-201ENST00000322213 SOCS3O14543 225 aa5.68□□□□□ -1.5
SMC1A-201ENST00000322213 PRADC1Q9BSG0 188 aa5.67□□□□□ -1.5
SMC1A-201ENST00000322213 TP53TG1Q9Y2A0 90 aa5.67□□□□□ -1.5
SMC1A-201ENST00000322213 FAM216BQ8N7L0 139 aa5.67□□□□□ -1.5
SMC1A-201ENST00000322213 LINC00477Q96M19 166 aa5.67□□□□□ -1.5
SMC1A-201ENST00000322213 IGKV1-39P01597 117 aa5.67□□□□□ -1.5
SMC1A-201ENST00000322213 IGKV1D-39P04432 117 aa5.67□□□□□ -1.5
SMC1A-201ENST00000322213 FXYD2P54710 66 aa5.67□□□□□ -1.5
SMC1A-201ENST00000322213 C15orf32Q32M92 178 aa5.67□□□□□ -1.5
SMC1A-201ENST00000322213 IL17RELQ6ZVW7 336 aa5.67□□□□□ -1.5
SMC1A-201ENST00000322213 GATD1Q8NB37 220 aa5.67□□□□□ -1.5
SMC1A-201ENST00000322213 A4D1N5 150 aa5.67□□□□□ -1.5
SMC1A-201ENST00000322213 ANXA2RQ3ZCQ2 193 aa5.67□□□□□ -1.5
SMC1A-201ENST00000322213 C14orf178Q8N769 122 aaPredicted RBP5.67□□□□□ -1.5
SMC1A-201ENST00000322213 TRGV3P03979 118 aa5.67□□□□□ -1.5
SMC1A-201ENST00000322213 BSPH1Q075Z2 132 aa5.67□□□□□ -1.5
SMC1A-201ENST00000322213 PRDM6Q9NQX0 595 aa5.67□□□□□ -1.5
SMC1A-201ENST00000322213 IGKV3D-20A0A0C4DH25 116 aa5.67□□□□□ -1.5
SMC1A-201ENST00000322213 ODF1Q14990 250 aa5.67□□□□□ -1.5
SMC1A-201ENST00000322213 THAP8Q8NA92 274 aa5.67□□□□□ -1.5
SMC1A-201ENST00000322213 RNF166Q96A37 237 aaPredicted RBP5.67□□□□□ -1.5
SMC1A-201ENST00000322213 LINC00527Q9UJ94 153 aa5.67□□□□□ -1.5
SMC1A-201ENST00000322213 IGHV3-49A0A0A0MS15 119 aa5.66□□□□□ -1.5
SMC1A-201ENST00000322213 CLEC19AQ6UXS0 136 aa5.66□□□□□ -1.5
SMC1A-201ENST00000322213 C20orf78Q9BR46 151 aa5.66□□□□□ -1.5
SMC1A-201ENST00000322213 PEMTQ9UBM1 199 aa5.66□□□□□ -1.5
SMC1A-201ENST00000322213 TRBV19A0A075B6N1 114 aa5.66□□□□□ -1.5
SMC1A-201ENST00000322213 DUX4L9Q6RFH8 374 aaPredicted RBP5.66□□□□□ -1.5
SMC1A-201ENST00000322213 FAM90A27PA6NNH2 459 aa5.66□□□□□ -1.5
SMC1A-201ENST00000322213 TMEM219Q86XT9 240 aa5.66□□□□□ -1.5
SMC1A-201ENST00000322213 CD177Q8N6Q3 437 aa5.66□□□□□ -1.5
SMC1A-201ENST00000322213 GTSF1Q8WW33 167 aa5.66□□□□□ -1.5
SMC1A-201ENST00000322213 DUX5Q96PT3 197 aa5.66□□□□□ -1.5
SMC1A-201ENST00000322213 MALP21145 153 aa5.66□□□□□ -1.5
SMC1A-201ENST00000322213 FOXG1P55316 489 aaPredicted RBP5.66□□□□□ -1.5
SMC1A-201ENST00000322213 MORN5Q5VZ52 161 aa5.66□□□□□ -1.5
SMC1A-201ENST00000322213 UFSP1Q6NVU6 142 aa5.66□□□□□ -1.5
SMC1A-201ENST00000322213 TOMM7Q9P0U1 55 aa5.66□□□□□ -1.5
SMC1A-201ENST00000322213 DSPP15924 2871 aaKnown RBP5.66□□□□□ -1.5
SMC1A-201ENST00000322213 NOTCH2Q04721 2471 aa5.66□□□□□ -1.5
SMC1A-201ENST00000322213 IGHV3OR16-13A0A075B7E8 117 aa5.66□□□□□ -1.5
SMC1A-201ENST00000322213 IGHV3-74A0A0B4J1X5 117 aa5.66□□□□□ -1.5
SMC1A-201ENST00000322213 EFNA2O43921 213 aa5.66□□□□□ -1.5
SMC1A-201ENST00000322213 SHISA2Q6UWI4 295 aa5.66□□□□□ -1.5
SMC1A-201ENST00000322213 TMEM167AQ8TBQ9 72 aa5.66□□□□□ -1.5
SMC1A-201ENST00000322213 SMIM2Q9BVW6 85 aa5.66□□□□□ -1.5
SMC1A-201ENST00000322213 V9GYY9 64 aa5.66□□□□□ -1.5
SMC1A-201ENST00000322213 IGHV3-35A0A0C4DH35 117 aa5.66□□□□□ -1.5
SMC1A-201ENST00000322213 DEFB123Q8N688 67 aa5.66□□□□□ -1.5
SMC1A-201ENST00000322213 J3QQQ9 107 aa5.65□□□□□ -1.5
SMC1A-201ENST00000322213 NDUFA7O95182 113 aa5.65□□□□□ -1.5
SMC1A-201ENST00000322213 C2orf66Q6UXQ4 117 aa5.65□□□□□ -1.5
SMC1A-201ENST00000322213 LY6G5BQ8NDX9 201 aa5.65□□□□□ -1.5
SMC1A-201ENST00000322213 WIPF3A6NGB9 483 aa5.65□□□□□ -1.5
SMC1A-201ENST00000322213 ZNF474Q6S9Z5 364 aaPredicted RBP5.65□□□□□ -1.5
SMC1A-201ENST00000322213 DTX1Q86Y01 620 aa5.65□□□□□ -1.5
SMC1A-201ENST00000322213 HS3ST6Q96QI5 342 aa5.65□□□□□ -1.5
SMC1A-201ENST00000322213 RNF5Q99942 180 aa5.65□□□□□ -1.5
SMC1A-201ENST00000322213 UBL5Q9BZL1 73 aa5.65□□□□□ -1.5
SMC1A-201ENST00000322213 C11orf1Q9H5F2 150 aa5.65□□□□□ -1.5
SMC1A-201ENST00000322213 TRAV13-2A0A0B4J235 113 aa5.65□□□□□ -1.5
SMC1A-201ENST00000322213 MYOD1P15172 320 aa5.65□□□□□ -1.5
SMC1A-201ENST00000322213 MRPL23Q16540 153 aaKnown RBP5.65□□□□□ -1.5
SMC1A-201ENST00000322213 NEU4Q8WWR8 484 aaPredicted RBP5.65□□□□□ -1.5
SMC1A-201ENST00000322213 CENPVL3A0A0U1RRI6 287 aa5.65□□□□□ -1.5
SMC1A-201ENST00000322213 VWC2LB2RUY7 222 aa5.65□□□□□ -1.5
SMC1A-201ENST00000322213 SAP25Q8TEE9 199 aa5.65□□□□□ -1.5
SMC1A-201ENST00000322213 CR1P17927 2039 aa5.65□□□□□ -1.5
SMC1A-201ENST00000322213 IGKV3OR2-268A0A0C4DH90 116 aa5.65□□□□□ -1.51
SMC1A-201ENST00000322213 PRR19A6NJB7 356 aa5.65□□□□□ -1.51
SMC1A-201ENST00000322213 SRRM4A7MD48 611 aaKnown RBP5.65□□□□□ -1.51
SMC1A-201ENST00000322213 ZNF833PQ6ZTB9 187 aa5.65□□□□□ -1.51
SMC1A-201ENST00000322213 DTX2Q86UW9 622 aa5.65□□□□□ -1.51
SMC1A-201ENST00000322213 C1orf210Q8IVY1 113 aa5.65□□□□□ -1.51
SMC1A-201ENST00000322213 SSC4DQ8WTU2 575 aa5.65□□□□□ -1.51
SMC1A-201ENST00000322213 SIGLEC9Q9Y336 463 aa5.65□□□□□ -1.51
SMC1A-201ENST00000322213 I3L3M4 83 aa5.65□□□□□ -1.51
SMC1A-201ENST00000322213 RASL10AQ92737 203 aa5.65□□□□□ -1.51
SMC1A-201ENST00000322213 LAMTOR3Q9UHA4 124 aa5.65□□□□□ -1.51
SMC1A-201ENST00000322213 ICOSQ9Y6W8 199 aa5.65□□□□□ -1.51
SMC1A-201ENST00000322213 TRPT1Q86TN4 253 aaKnown RBP5.64□□□□□ -1.51
SMC1A-201ENST00000322213 CSDC2Q9Y534 153 aaKnown RBP5.64□□□□□ -1.51
SMC1A-201ENST00000322213 C2orf70A6NJV1 201 aa5.64□□□□□ -1.51
SMC1A-201ENST00000322213 KLK10O43240 276 aa5.64□□□□□ -1.51
SMC1A-201ENST00000322213 ERCC8Q13216 396 aa5.64□□□□□ -1.51
SMC1A-201ENST00000322213 FAM168AQ92567 244 aa5.64□□□□□ -1.51
SMC1A-201ENST00000322213 FOXC1Q12948 553 aa5.64□□□□□ -1.51
SMC1A-201ENST00000322213 CR1LQ2VPA4 569 aa5.64□□□□□ -1.51
SMC1A-201ENST00000322213 M0QXV9 152 aa5.64□□□□□ -1.51
SMC1A-201ENST00000322213 UQCRQO14949 82 aa5.64□□□□□ -1.51
SMC1A-201ENST00000322213 PAX8Q06710 450 aa5.64□□□□□ -1.51
SMC1A-201ENST00000322213 IGHV3OR16-8A0A075B7F1 116 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms