RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 IGKV1-13P0DP09 117 aa6.09□□□□□ -1.43
LIMCH1-201ENST00000313860 SPINK13Q1W4C9 94 aa6.09□□□□□ -1.43
LIMCH1-201ENST00000313860 C1orf100Q5SVJ3 147 aa6.09□□□□□ -1.43
LIMCH1-201ENST00000313860 RNASE6Q93091 150 aaKnown RBP6.09□□□□□ -1.43
LIMCH1-201ENST00000313860 ARID2Q68CP9 1835 aa6.09□□□□□ -1.43
LIMCH1-201ENST00000313860 OOSP1A8MZH6 123 aa6.09□□□□□ -1.44
LIMCH1-201ENST00000313860 CMC4P56277 68 aaPredicted RBP6.09□□□□□ -1.44
LIMCH1-201ENST00000313860 Q6ZWC4 215 aa6.09□□□□□ -1.44
LIMCH1-201ENST00000313860 SHANK3Q9BYB0 1731 aa6.09□□□□□ -1.44
LIMCH1-201ENST00000313860 SPAG17Q6Q759 2223 aa6.09□□□□□ -1.44
LIMCH1-201ENST00000313860 MBD3L3A6NE82 208 aaPredicted RBP6.08□□□□□ -1.44
LIMCH1-201ENST00000313860 UCNP55089 124 aa6.08□□□□□ -1.44
LIMCH1-201ENST00000313860 TMEM133Q9H2Q1 129 aa6.08□□□□□ -1.44
LIMCH1-201ENST00000313860 ITGB4P16144 1822 aa6.08□□□□□ -1.44
LIMCH1-201ENST00000313860 SLPIP03973 132 aa6.08□□□□□ -1.44
LIMCH1-201ENST00000313860 C22orf34Q6ZV56 151 aa6.08□□□□□ -1.44
LIMCH1-201ENST00000313860 FOCADQ5VW36 1801 aa6.08□□□□□ -1.44
LIMCH1-201ENST00000313860 TAF1P21675 1872 aa6.08□□□□□ -1.44
LIMCH1-201ENST00000313860 GREB1LQ9C091 1923 aaPredicted RBP6.08□□□□□ -1.44
LIMCH1-201ENST00000313860 TRBV5-3A0A0A0MS03 114 aa6.08□□□□□ -1.44
LIMCH1-201ENST00000313860 J3QLI3 93 aa6.08□□□□□ -1.44
LIMCH1-201ENST00000313860 BTCP35070 178 aa6.08□□□□□ -1.44
LIMCH1-201ENST00000313860 CRIP2P52943 208 aaPredicted RBP6.08□□□□□ -1.44
LIMCH1-201ENST00000313860 WDR83OSQ9Y284 106 aa6.08□□□□□ -1.44
LIMCH1-201ENST00000313860 RGPD3A6NKT7 1758 aaPredicted RBP6.08□□□□□ -1.44
LIMCH1-201ENST00000313860 RGPD4Q7Z3J3 1758 aa6.08□□□□□ -1.44
LIMCH1-201ENST00000313860 IGLV3-16A0A075B6K0 115 aa6.08□□□□□ -1.44
LIMCH1-201ENST00000313860 TRBV30A0A0K0K1B3 111 aa6.08□□□□□ -1.44
LIMCH1-201ENST00000313860 GATA3P23771 443 aa6.08□□□□□ -1.44
LIMCH1-201ENST00000313860 DEFB131AP59861 70 aa6.08□□□□□ -1.44
LIMCH1-201ENST00000313860 ARTNQ5T4W7 220 aa6.08□□□□□ -1.44
LIMCH1-201ENST00000313860 UBE2D3P61077 147 aa6.07□□□□□ -1.44
LIMCH1-201ENST00000313860 ABCA7Q8IZY2 2146 aa6.07□□□□□ -1.44
LIMCH1-201ENST00000313860 IGKV1D-37A0A075B6S9 117 aa6.07□□□□□ -1.44
LIMCH1-201ENST00000313860 SMCHD1A6NHR9 2005 aa6.07□□□□□ -1.44
LIMCH1-201ENST00000313860 A8MZ25 164 aa6.07□□□□□ -1.44
LIMCH1-201ENST00000313860 TRIAP1O43715 76 aa6.07□□□□□ -1.44
LIMCH1-201ENST00000313860 COX7BP24311 80 aa6.07□□□□□ -1.44
LIMCH1-201ENST00000313860 Q0VG73 95 aa6.07□□□□□ -1.44
LIMCH1-201ENST00000313860 STPG1Q5TH74 334 aa6.07□□□□□ -1.44
LIMCH1-201ENST00000313860 NRAPQ86VF7 1730 aa6.07□□□□□ -1.44
LIMCH1-201ENST00000313860 LINC01560Q8TB33 94 aa6.07□□□□□ -1.44
LIMCH1-201ENST00000313860 RNF138Q8WVD3 245 aa6.07□□□□□ -1.44
LIMCH1-201ENST00000313860 LOC107984640A0A0U1RRK4 108 aa6.07□□□□□ -1.44
LIMCH1-201ENST00000313860 TCL1BO95988 128 aa6.07□□□□□ -1.44
LIMCH1-201ENST00000313860 TMEM200BQ69YZ2 307 aa6.07□□□□□ -1.44
LIMCH1-201ENST00000313860 WIPF1O43516 503 aa6.07□□□□□ -1.44
LIMCH1-201ENST00000313860 UBE2D2P62837 147 aa6.07□□□□□ -1.44
LIMCH1-201ENST00000313860 KLHL30-AS1Q8NEE0 82 aa6.07□□□□□ -1.44
LIMCH1-201ENST00000313860 CNTRLQ7Z7A1 2325 aa6.07□□□□□ -1.44
LIMCH1-201ENST00000313860 CTGFP29279 349 aa6.07□□□□□ -1.44
LIMCH1-201ENST00000313860 MRPL51Q4U2R6 128 aaKnown RBP6.07□□□□□ -1.44
LIMCH1-201ENST00000313860 C18orf32Q8TCD1 76 aa6.07□□□□□ -1.44
LIMCH1-201ENST00000313860 IGKV2-24A0A0C4DH68 120 aa6.06□□□□□ -1.44
LIMCH1-201ENST00000313860 TMEM263Q8WUH6 116 aaKnown RBP6.06□□□□□ -1.44
LIMCH1-201ENST00000313860 SF3B5Q9BWJ5 86 aaKnown RBP6.06□□□□□ -1.44
LIMCH1-201ENST00000313860 IGLV8-61A0A075B6I0 122 aa6.06□□□□□ -1.44
LIMCH1-201ENST00000313860 PHLPP1O60346 1717 aa6.06□□□□□ -1.44
LIMCH1-201ENST00000313860 CACNA1CQ13936 2221 aa6.06□□□□□ -1.44
LIMCH1-201ENST00000313860 F8VRH5 84 aa6.06□□□□□ -1.44
LIMCH1-201ENST00000313860 ITGBL1O95965 494 aaPredicted RBP6.06□□□□□ -1.44
LIMCH1-201ENST00000313860 NCOR1O75376 2440 aa6.05□□□□□ -1.44
LIMCH1-201ENST00000313860 FAM19A1Q7Z5A9 133 aa6.05□□□□□ -1.44
LIMCH1-201ENST00000313860 PRR19A6NJB7 356 aa6.05□□□□□ -1.44
LIMCH1-201ENST00000313860 M0QZQ0 153 aa6.05□□□□□ -1.44
LIMCH1-201ENST00000313860 UBE2D1P51668 147 aa6.05□□□□□ -1.44
LIMCH1-201ENST00000313860 FAM168AQ92567 244 aa6.05□□□□□ -1.44
LIMCH1-201ENST00000313860 RSPO4Q2I0M5 234 aaPredicted RBP6.05□□□□□ -1.44
LIMCH1-201ENST00000313860 NRACQ8N912 160 aa6.05□□□□□ -1.44
LIMCH1-201ENST00000313860 PPDPFQ9H3Y8 114 aa6.05□□□□□ -1.44
LIMCH1-201ENST00000313860 PRO0628Q9UI54 55 aa6.05□□□□□ -1.44
LIMCH1-201ENST00000313860 LIMS1P48059 325 aa6.05□□□□□ -1.44
LIMCH1-201ENST00000313860 ODF1Q14990 250 aa6.05□□□□□ -1.44
LIMCH1-201ENST00000313860 FAM60AQ9NP50 221 aa6.05□□□□□ -1.44
LIMCH1-201ENST00000313860 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.04□□□□□ -1.44
LIMCH1-201ENST00000313860 TTC3P53804 2025 aa6.04□□□□□ -1.44
LIMCH1-201ENST00000313860 KLF14Q8TD94 323 aaPredicted RBP6.04□□□□□ -1.44
LIMCH1-201ENST00000313860 LINC00208Q96KT6 92 aa6.04□□□□□ -1.44
LIMCH1-201ENST00000313860 PRRC2BQ5JSZ5 2229 aaKnown RBP6.04□□□□□ -1.44
LIMCH1-201ENST00000313860 TNFRSF13BO14836 293 aaPredicted RBP6.04□□□□□ -1.44
LIMCH1-201ENST00000313860 CCL3P10147 92 aa6.04□□□□□ -1.44
LIMCH1-201ENST00000313860 TMEM30BQ3MIR4 351 aa6.04□□□□□ -1.44
LIMCH1-201ENST00000313860 Q9UF83 564 aa6.04□□□□□ -1.44
LIMCH1-201ENST00000313860 DICER1Q9UPY3 1922 aaKnown RBP6.04□□□□□ -1.44
LIMCH1-201ENST00000313860 ZNF726P1Q15940 193 aa6.04□□□□□ -1.44
LIMCH1-201ENST00000313860 ESRGQ1W209 222 aa6.04□□□□□ -1.44
LIMCH1-201ENST00000313860 MST1LQ2TV78 715 aa6.04□□□□□ -1.44
LIMCH1-201ENST00000313860 PIP4P2Q8N4L2 257 aa6.04□□□□□ -1.44
LIMCH1-201ENST00000313860 DEFB103AP81534 67 aa6.03□□□□□ -1.44
LIMCH1-201ENST00000313860 CFAP126Q5VTH2 177 aa6.03□□□□□ -1.44
LIMCH1-201ENST00000313860 PIFOQ8TCI5 191 aa6.03□□□□□ -1.44
LIMCH1-201ENST00000313860 IGKV6D-21A0A0A0MT36 114 aa6.03□□□□□ -1.44
LIMCH1-201ENST00000313860 C19orf84I3L1E1 186 aa6.03□□□□□ -1.44
LIMCH1-201ENST00000313860 CT62P0C5K7 136 aa6.03□□□□□ -1.44
LIMCH1-201ENST00000313860 IGFBP6P24592 240 aaPredicted RBP6.03□□□□□ -1.44
LIMCH1-201ENST00000313860 FAM110DQ8TAY7 271 aaPredicted RBP6.03□□□□□ -1.44
LIMCH1-201ENST00000313860 FGF23Q9GZV9 251 aaPredicted RBP6.03□□□□□ -1.44
LIMCH1-201ENST00000313860 SIPA1L1O43166 1804 aa6.03□□□□□ -1.44
LIMCH1-201ENST00000313860 CCL3L1P16619 93 aa6.03□□□□□ -1.44
LIMCH1-201ENST00000313860 IGKV1D-8A0A087WSZ0 117 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms