RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 IFI27L1Q96BM0 104 aa12.82□□□□□ -0.36
CTCF-201ENST00000264010 GFRA4Q9GZZ7 299 aa12.82□□□□□ -0.36
CTCF-201ENST00000264010 KLF12Q9Y4X4 402 aa12.82□□□□□ -0.36
CTCF-201ENST00000264010 ODF3BA8MYP8 253 aa12.82□□□□□ -0.36
CTCF-201ENST00000264010 IGHV4-39P01824 125 aa12.82□□□□□ -0.36
CTCF-201ENST00000264010 CFHR4Q92496 578 aa12.82□□□□□ -0.36
CTCF-201ENST00000264010 SCGB1A1P11684 91 aa12.82□□□□□ -0.36
CTCF-201ENST00000264010 PAX1P15863 534 aa12.82□□□□□ -0.36
CTCF-201ENST00000264010 FAM110DQ8TAY7 271 aaPredicted RBP12.82□□□□□ -0.36
CTCF-201ENST00000264010 H3BRM9 83 aa12.81□□□□□ -0.36
CTCF-201ENST00000264010 ZFP36P26651 326 aaKnown RBP12.81□□□□□ -0.36
CTCF-201ENST00000264010 LY6EQ16553 131 aa12.81□□□□□ -0.36
CTCF-201ENST00000264010 TMEM75Q8N9X5 138 aa12.81□□□□□ -0.36
CTCF-201ENST00000264010 TACC2O95359 2948 aa12.81□□□□□ -0.36
CTCF-201ENST00000264010 G3V4G9 280 aa12.81□□□□□ -0.36
CTCF-201ENST00000264010 JMJD8Q96S16 334 aa12.81□□□□□ -0.36
CTCF-201ENST00000264010 IGLV11-55A0A075B6I3 123 aa12.81□□□□□ -0.36
CTCF-201ENST00000264010 IGHV3OR16-13A0A075B7E8 117 aa12.81□□□□□ -0.36
CTCF-201ENST00000264010 IGHV3-74A0A0B4J1X5 117 aa12.81□□□□□ -0.36
CTCF-201ENST00000264010 A8MWV9 139 aa12.81□□□□□ -0.36
CTCF-201ENST00000264010 TRGV3P03979 118 aa12.81□□□□□ -0.36
CTCF-201ENST00000264010 GAGE5Q13069 117 aa12.81□□□□□ -0.36
CTCF-201ENST00000264010 GAGE6Q13070 117 aa12.81□□□□□ -0.36
CTCF-201ENST00000264010 TMEM78Q5T7P6 136 aa12.81□□□□□ -0.36
CTCF-201ENST00000264010 WIPF2Q8TF74 440 aaPredicted RBP12.81□□□□□ -0.36
CTCF-201ENST00000264010 NPFFR1Q9GZQ6 430 aa12.81□□□□□ -0.36
CTCF-201ENST00000264010 ITLN2Q8WWU7 325 aaPredicted RBP12.8□□□□□ -0.36
CTCF-201ENST00000264010 MOB4Q9Y3A3 225 aa12.8□□□□□ -0.36
CTCF-201ENST00000264010 MRPL23Q16540 153 aaKnown RBP12.8□□□□□ -0.36
CTCF-201ENST00000264010 TTTY13Q9BZ97 58 aa12.8□□□□□ -0.36
CTCF-201ENST00000264010 PGPEP1Q9NXJ5 209 aa12.8□□□□□ -0.36
CTCF-201ENST00000264010 MGPP08493 103 aa12.8□□□□□ -0.36
CTCF-201ENST00000264010 EVI2AP22794 236 aa12.8□□□□□ -0.36
CTCF-201ENST00000264010 MAP1LC3AQ9H492 121 aa12.8□□□□□ -0.36
CTCF-201ENST00000264010 IGHV3-66A0A0C4DH42 116 aa12.79□□□□□ -0.36
CTCF-201ENST00000264010 ZC2HC1BQ5TFG8 222 aa12.79□□□□□ -0.36
CTCF-201ENST00000264010 HOXA3O43365 443 aaPredicted RBP12.79□□□□□ -0.36
CTCF-201ENST00000264010 PF4V1P10720 104 aa12.79□□□□□ -0.36
CTCF-201ENST00000264010 C7orf69Q9H7B7 122 aa12.79□□□□□ -0.36
CTCF-201ENST00000264010 RNF114Q9Y508 228 aa12.79□□□□□ -0.36
CTCF-201ENST00000264010 IGKV3-7A0A075B6H7 116 aa12.79□□□□□ -0.36
CTCF-201ENST00000264010 IGHV3-49A0A0A0MS15 119 aa12.79□□□□□ -0.36
CTCF-201ENST00000264010 TRAV40A0A0B4J280 105 aa12.79□□□□□ -0.36
CTCF-201ENST00000264010 ATP6V0E1O15342 81 aa12.79□□□□□ -0.36
CTCF-201ENST00000264010 TMEM219Q86XT9 240 aa12.79□□□□□ -0.36
CTCF-201ENST00000264010 C16orf92Q96LL3 132 aa12.79□□□□□ -0.36
CTCF-201ENST00000264010 TRAV12-3A0A0B4J271 114 aa12.78□□□□□ -0.36
CTCF-201ENST00000264010 FAM120AOSQ5T036 256 aa12.78□□□□□ -0.36
CTCF-201ENST00000264010 RNF183Q96D59 192 aa12.78□□□□□ -0.36
CTCF-201ENST00000264010 C17orf77Q96MU5 243 aa12.78□□□□□ -0.36
CTCF-201ENST00000264010 SMAD7O15105 426 aaKnown RBP12.78□□□□□ -0.36
CTCF-201ENST00000264010 OR9G4Q8NGQ1 327 aa12.78□□□□□ -0.36
CTCF-201ENST00000264010 SLC50A1Q9BRV3 221 aa12.78□□□□□ -0.36
CTCF-201ENST00000264010 RELNP78509 3460 aa12.78□□□□□ -0.36
CTCF-201ENST00000264010 IGKV2-40A0A087WW87 121 aaPredicted RBP12.78□□□□□ -0.36
CTCF-201ENST00000264010 IGKV2D-40P01614 121 aaPredicted RBP12.78□□□□□ -0.36
CTCF-201ENST00000264010 VGLL1Q99990 258 aa12.78□□□□□ -0.36
CTCF-201ENST00000264010 SIRPDQ9H106 197 aa12.78□□□□□ -0.36
CTCF-201ENST00000264010 IGHV7-81A0A0B4J1V7 117 aa12.77□□□□□ -0.36
CTCF-201ENST00000264010 PCP2Q8IVA1 136 aa12.77□□□□□ -0.36
CTCF-201ENST00000264010 SPTBN4Q9H254 2564 aa12.77□□□□□ -0.36
CTCF-201ENST00000264010 TRAV41A0A0B4J266 112 aa12.77□□□□□ -0.37
CTCF-201ENST00000264010 SMKR1H3BMG3 65 aa12.77□□□□□ -0.37
CTCF-201ENST00000264010 LEPP41159 167 aa12.77□□□□□ -0.37
CTCF-201ENST00000264010 MRGPRG-AS1Q2M3A8 158 aa12.77□□□□□ -0.37
CTCF-201ENST00000264010 SPANXN1Q5VSR9 72 aa12.77□□□□□ -0.37
CTCF-201ENST00000264010 FANCD2OSQ96PS1 177 aa12.77□□□□□ -0.37
CTCF-201ENST00000264010 CHAC1Q9BUX1 264 aa12.77□□□□□ -0.37
CTCF-201ENST00000264010 MGAQ8IWI9 3026 aa12.76□□□□□ -0.37
CTCF-201ENST00000264010 MYCNOSP40205 109 aa12.76□□□□□ -0.37
CTCF-201ENST00000264010 ARHGAP32A7KAX9 2087 aa12.76□□□□□ -0.37
CTCF-201ENST00000264010 PIEZO1Q92508 2521 aa12.76□□□□□ -0.37
CTCF-201ENST00000264010 IGHV1-24A0A0C4DH33 117 aa12.76□□□□□ -0.37
CTCF-201ENST00000264010 GAGE12JA6NER3 117 aa12.76□□□□□ -0.37
CTCF-201ENST00000264010 PRSS29PA6NIE9 313 aa12.76□□□□□ -0.37
CTCF-201ENST00000264010 GAGE7O76087 117 aa12.76□□□□□ -0.37
CTCF-201ENST00000264010 GAGE12FP0CL80 117 aa12.76□□□□□ -0.37
CTCF-201ENST00000264010 GAGE12GP0CL81 117 aa12.76□□□□□ -0.37
CTCF-201ENST00000264010 GAGE12IP0CL82 117 aa12.76□□□□□ -0.37
CTCF-201ENST00000264010 GAGE4Q13068 117 aa12.76□□□□□ -0.37
CTCF-201ENST00000264010 PRORYQ9H606 182 aa12.76□□□□□ -0.37
CTCF-201ENST00000264010 TRBV7-1A0A0A6YYK4 115 aa12.76□□□□□ -0.37
CTCF-201ENST00000264010 WI2-2373I1.2A0A1W2PRP0 233 aa12.76□□□□□ -0.37
CTCF-201ENST00000264010 SIGLEC15Q6ZMC9 328 aa12.76□□□□□ -0.37
CTCF-201ENST00000264010 Q8N9W7 124 aa12.76□□□□□ -0.37
CTCF-201ENST00000264010 CHCHD1Q96BP2 118 aaKnown RBP12.76□□□□□ -0.37
CTCF-201ENST00000264010 TMEM170BQ5T4T1 132 aa12.75□□□□□ -0.37
CTCF-201ENST00000264010 BRD3OSQ6XYD6 125 aa12.75□□□□□ -0.37
CTCF-201ENST00000264010 HBDP02042 147 aa12.75□□□□□ -0.37
CTCF-201ENST00000264010 IFI27P40305 119 aaPredicted RBP12.75□□□□□ -0.37
CTCF-201ENST00000264010 RUSC1-AS1Q66K80 236 aa12.75□□□□□ -0.37
CTCF-201ENST00000264010 SPAG8Q99932 426 aaPredicted RBP12.75□□□□□ -0.37
CTCF-201ENST00000264010 FABP5P3A8MUU1 101 aa12.75□□□□□ -0.37
CTCF-201ENST00000264010 NDPQ00604 133 aa12.75□□□□□ -0.37
CTCF-201ENST00000264010 C20orf78Q9BR46 151 aa12.75□□□□□ -0.37
CTCF-201ENST00000264010 LINC00527Q9UJ94 153 aa12.75□□□□□ -0.37
CTCF-201ENST00000264010 G3V318 75 aa12.74□□□□□ -0.37
CTCF-201ENST00000264010 COX8AP10176 69 aa12.74□□□□□ -0.37
CTCF-201ENST00000264010 ORMDL3Q8N138 153 aa12.74□□□□□ -0.37
CTCF-201ENST00000264010 DYNAPQ8N1N2 210 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms