RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 IL15RAQ13261 267 aa15.23■□□□□ 0.03
UPF1-201ENST00000262803 KIR3DS1Q14943 382 aa15.23■□□□□ 0.03
UPF1-201ENST00000262803 C20orf144Q9BQM9 153 aa15.23■□□□□ 0.03
UPF1-201ENST00000262803 PLXND1Q9Y4D7 1925 aa15.23■□□□□ 0.03
UPF1-201ENST00000262803 IGHV1-24A0A0C4DH33 117 aa15.22■□□□□ 0.03
UPF1-201ENST00000262803 UBE2V1Q13404 147 aa15.22■□□□□ 0.03
UPF1-201ENST00000262803 C9orf66Q5T8R8 295 aa15.22■□□□□ 0.03
UPF1-201ENST00000262803 NOTCH4Q99466 2003 aa15.22■□□□□ 0.03
UPF1-201ENST00000262803 RBAKDNA6NC62 111 aa15.22■□□□□ 0.03
UPF1-201ENST00000262803 WT1-ASQ06250 92 aa15.22■□□□□ 0.03
UPF1-201ENST00000262803 SDHAF1A6NFY7 115 aa15.21■□□□□ 0.03
UPF1-201ENST00000262803 IGHV2-5P01817 119 aa15.21■□□□□ 0.03
UPF1-201ENST00000262803 STPG4Q8N801 248 aa15.21■□□□□ 0.03
UPF1-201ENST00000262803 GAGE12BA1L429 117 aa15.21■□□□□ 0.03
UPF1-201ENST00000262803 GAGE7O76087 117 aa15.21■□□□□ 0.03
UPF1-201ENST00000262803 GAGE12FP0CL80 117 aa15.21■□□□□ 0.03
UPF1-201ENST00000262803 GAGE12GP0CL81 117 aa15.21■□□□□ 0.03
UPF1-201ENST00000262803 GAGE12IP0CL82 117 aa15.21■□□□□ 0.03
UPF1-201ENST00000262803 ZNF114Q8NC26 417 aa15.21■□□□□ 0.03
UPF1-201ENST00000262803 G3V318 75 aa15.21■□□□□ 0.03
UPF1-201ENST00000262803 V9GYV3 84 aa15.21■□□□□ 0.03
UPF1-201ENST00000262803 TRAV8-3A0A0A6YYJ7 113 aa15.21■□□□□ 0.02
UPF1-201ENST00000262803 FOXE3Q13461 319 aa15.2■□□□□ 0.02
UPF1-201ENST00000262803 UTF1Q5T230 341 aa15.2■□□□□ 0.02
UPF1-201ENST00000262803 TRAV13-2A0A0B4J235 113 aa15.2■□□□□ 0.02
UPF1-201ENST00000262803 FAM215AQ9Y5M1 114 aa15.2■□□□□ 0.02
UPF1-201ENST00000262803 C8orf49Q96NF6 230 aa15.2■□□□□ 0.02
UPF1-201ENST00000262803 ZNRF2Q8NHG8 242 aa15.2■□□□□ 0.02
UPF1-201ENST00000262803 MMP23AO75900 390 aa15.19■□□□□ 0.02
UPF1-201ENST00000262803 SLX1AQ9BQ83 275 aa15.19■□□□□ 0.02
UPF1-201ENST00000262803 KLF5Q13887 457 aaPredicted RBP15.19■□□□□ 0.02
UPF1-201ENST00000262803 ANXA2RQ3ZCQ2 193 aa15.19■□□□□ 0.02
UPF1-201ENST00000262803 MALRD1Q5VYJ5 2156 aa15.19■□□□□ 0.02
UPF1-201ENST00000262803 KLK9Q9UKQ9 250 aa15.19■□□□□ 0.02
UPF1-201ENST00000262803 GTF3C1Q12789 2109 aa15.18■□□□□ 0.02
UPF1-201ENST00000262803 TPSG1Q9NRR2 321 aa15.18■□□□□ 0.02
UPF1-201ENST00000262803 IGHV2-70P01814 119 aa15.18■□□□□ 0.02
UPF1-201ENST00000262803 TAL2Q16559 108 aa15.18■□□□□ 0.02
UPF1-201ENST00000262803 DEFB113Q30KQ7 82 aa15.17■□□□□ 0.02
UPF1-201ENST00000262803 HLA-DRB4P13762 266 aa15.17■□□□□ 0.02
UPF1-201ENST00000262803 HLA-DRB4X5D2U9 266 aa15.17■□□□□ 0.02
UPF1-201ENST00000262803 CGB3P0DN86 165 aa15.17■□□□□ 0.02
UPF1-201ENST00000262803 GAGE2AQ6NT46 116 aa15.17■□□□□ 0.02
UPF1-201ENST00000262803 IGFL2Q6UWQ7 119 aa15.17■□□□□ 0.02
UPF1-201ENST00000262803 KNCNA6PVL3 124 aa15.16■□□□□ 0.02
UPF1-201ENST00000262803 LGALS9BQ3B8N2 356 aa15.16■□□□□ 0.02
UPF1-201ENST00000262803 LGALS9CQ6DKI2 356 aa15.16■□□□□ 0.02
UPF1-201ENST00000262803 Q6ZWC4 215 aa15.16■□□□□ 0.02
UPF1-201ENST00000262803 PRSS33Q8NF86 280 aa15.16■□□□□ 0.02
UPF1-201ENST00000262803 IGLC1P0CG04 106 aa15.16■□□□□ 0.02
UPF1-201ENST00000262803 HOXB4P17483 251 aaPredicted RBP15.16■□□□□ 0.02
UPF1-201ENST00000262803 Q8NFD4 153 aa15.16■□□□□ 0.02
UPF1-201ENST00000262803 C11orf52Q96A22 123 aa15.16■□□□□ 0.02
UPF1-201ENST00000262803 UBL5Q9BZL1 73 aa15.16■□□□□ 0.02
UPF1-201ENST00000262803 SMIM2Q9BVW6 85 aa15.15■□□□□ 0.02
UPF1-201ENST00000262803 COX11Q9Y6N1 276 aa15.15■□□□□ 0.02
UPF1-201ENST00000262803 SMIM27A0A1W2PRY6 76 aa15.14■□□□□ 0.01
UPF1-201ENST00000262803 GAGE6Q13070 117 aa15.14■□□□□ 0.01
UPF1-201ENST00000262803 MRPL51Q4U2R6 128 aaKnown RBP15.14■□□□□ 0.01
UPF1-201ENST00000262803 ZNF493Q6ZR52 646 aa15.14■□□□□ 0.01
UPF1-201ENST00000262803 UBE2WQ96B02 151 aa15.14■□□□□ 0.01
UPF1-201ENST00000262803 DIAPH2-AS1Q14236 149 aa15.14■□□□□ 0.01
UPF1-201ENST00000262803 OCIAD2Q56VL3 154 aa15.14■□□□□ 0.01
UPF1-201ENST00000262803 C22orf46C9J442 243 aa15.13■□□□□ 0.01
UPF1-201ENST00000262803 IGLC2P0DOY2 106 aa15.13■□□□□ 0.01
UPF1-201ENST00000262803 IGLC3P0DOY3 106 aa15.13■□□□□ 0.01
UPF1-201ENST00000262803 NDUFA12Q9UI09 145 aa15.13■□□□□ 0.01
UPF1-201ENST00000262803 CFHR3Q02985 330 aa15.13■□□□□ 0.01
UPF1-201ENST00000262803 SHISA9B4DS77 424 aa15.12■□□□□ 0.01
UPF1-201ENST00000262803 C9JAW5 83 aa15.12■□□□□ 0.01
UPF1-201ENST00000262803 PRR20EP86478 221 aa15.12■□□□□ 0.01
UPF1-201ENST00000262803 PRR20CP86479 221 aa15.12■□□□□ 0.01
UPF1-201ENST00000262803 PRR20DP86480 221 aa15.12■□□□□ 0.01
UPF1-201ENST00000262803 PRR20BP86481 221 aa15.12■□□□□ 0.01
UPF1-201ENST00000262803 PRR20AP86496 221 aa15.12■□□□□ 0.01
UPF1-201ENST00000262803 TMEM89A2RUT3 159 aa15.12■□□□□ 0.01
UPF1-201ENST00000262803 LYPD6BQ8NI32 183 aa15.12■□□□□ 0.01
UPF1-201ENST00000262803 IGHV3-16A0A0C4DH30 117 aa15.11■□□□□ 0.01
UPF1-201ENST00000262803 CCL24O00175 119 aa15.11■□□□□ 0.01
UPF1-201ENST00000262803 LINC01545Q5VT33 79 aa15.11■□□□□ 0.01
UPF1-201ENST00000262803 PRSS29PA6NIE9 313 aa15.11■□□□□ 0.01
UPF1-201ENST00000262803 FXYD5Q96DB9 178 aa15.11■□□□□ 0.01
UPF1-201ENST00000262803 H3BQ85 93 aa15.11■□□□□ 0.01
UPF1-201ENST00000262803 CGB7P0DN87 165 aa15.11■□□□□ 0.01
UPF1-201ENST00000262803 HERV-K104P63124 156 aa15.11■□□□□ 0.01
UPF1-201ENST00000262803 PRSS57Q6UWY2 283 aa15.11■□□□□ 0.01
UPF1-201ENST00000262803 C16orf74Q96GX8 76 aa15.11■□□□□ 0.01
UPF1-201ENST00000262803 MAPK1IP1LQ8NDC0 245 aa15.1■□□□□ 0.01
UPF1-201ENST00000262803 CRLF1O75462 422 aa15.1■□□□□ 0.01
UPF1-201ENST00000262803 ANGP03950 147 aaKnown RBP15.1■□□□□ 0.01
UPF1-201ENST00000262803 DEFB112Q30KQ8 113 aa15.1■□□□□ 0.01
UPF1-201ENST00000262803 NPBQ8NG41 125 aa15.1■□□□□ 0.01
UPF1-201ENST00000262803 IGF2BP2-AS1Q96M15 143 aa15.1■□□□□ 0.01
UPF1-201ENST00000262803 F8VRH5 84 aa15.09■□□□□ 0.01
UPF1-201ENST00000262803 PFN2P35080 140 aa15.09■□□□□ 0.01
UPF1-201ENST00000262803 LURAP1LQ8IV03 231 aa15.09■□□□□ 0.01
UPF1-201ENST00000262803 DSCR8Q96T75 97 aa15.09■□□□□ 0.01
UPF1-201ENST00000262803 SCRT2Q9NQ03 307 aa15.09■□□□□ 0.01
UPF1-201ENST00000262803 DAZAP2Q15038 168 aaPredicted RBP15.08■□□□□ 0.01
UPF1-201ENST00000262803 ASPHD1Q5U4P2 390 aa15.08■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms