RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 EXOC3-AS1Q8N2X6 119 aa3.74□□□□□ -1.81
SCN1A-220ENST00000641603 PRSS22Q9GZN4 317 aa3.74□□□□□ -1.81
SCN1A-220ENST00000641603 MT-ATP8P03928 68 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 C1orf122Q6ZSJ8 110 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 HEATR5BQ9P2D3 2071 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 TRIOBPQ9H2D6 2365 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 YLPM1P49750 1951 aaKnown RBP3.73□□□□□ -1.81
SCN1A-220ENST00000641603 ZNRF1Q8ND25 227 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 PLA2G2EQ9NZK7 142 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 ADARB2-AS1A8MUL3 147 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 ZNF883P0CG24 379 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 DKK2Q9UBU2 259 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 A0A1W2PR77 199 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 RNASE1P07998 156 aaKnown RBP3.73□□□□□ -1.81
SCN1A-220ENST00000641603 TOMM6Q96B49 74 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 IGKV2-40A0A087WW87 121 aaPredicted RBP3.73□□□□□ -1.81
SCN1A-220ENST00000641603 IGKV2D-40P01614 121 aaPredicted RBP3.73□□□□□ -1.81
SCN1A-220ENST00000641603 LINC00527Q9UJ94 153 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 MDC1Q14676 2089 aaKnown RBP3.73□□□□□ -1.81
SCN1A-220ENST00000641603 CFAP126Q5VTH2 177 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 SIGLEC9Q9Y336 463 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 SERP1Q9Y6X1 66 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 DOCK5Q9H7D0 1870 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 CCL3L1P16619 93 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 SLC22A18ASQ8N1D0 253 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 NCKAP5O14513 1909 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 GTF3C1Q12789 2109 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 TRAV3A0A0B4J244 114 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 C17orf100A8MU93 164 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 F8WEM9 126 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 CLPSP04118 112 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 LINC00158P58513 81 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 KHDC1LQ5JSQ8 128 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 MAFAQ8NHW3 353 aaPredicted RBP3.73□□□□□ -1.81
SCN1A-220ENST00000641603 SMIM26A0A096LP01 95 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 TRBV30A0A0K0K1B3 111 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 CRYGBP07316 175 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 ALKBH6Q3KRA9 238 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 ZNF407Q9C0G0 2248 aa3.73□□□□□ -1.81
SCN1A-220ENST00000641603 DOCK9Q9BZ29 2069 aa3.72□□□□□ -1.81
SCN1A-220ENST00000641603 PAX8Q06710 450 aa3.72□□□□□ -1.81
SCN1A-220ENST00000641603 ZC2HC1AQ96GY0 325 aa3.72□□□□□ -1.81
SCN1A-220ENST00000641603 TIMM17BO60830 172 aa3.72□□□□□ -1.81
SCN1A-220ENST00000641603 CELA3BP08861 270 aa3.72□□□□□ -1.81
SCN1A-220ENST00000641603 CFHR1Q03591 330 aa3.72□□□□□ -1.81
SCN1A-220ENST00000641603 C17orf82Q86X59 251 aaPredicted RBP3.72□□□□□ -1.81
SCN1A-220ENST00000641603 Q8N1Y9 231 aa3.72□□□□□ -1.81
SCN1A-220ENST00000641603 MBD6Q96DN6 1003 aa3.72□□□□□ -1.81
SCN1A-220ENST00000641603 ZNF876PQ49A33 203 aa3.72□□□□□ -1.81
SCN1A-220ENST00000641603 FAM201AQ5SY85 155 aa3.72□□□□□ -1.81
SCN1A-220ENST00000641603 CNOT1A5YKK6 2376 aaKnown RBP3.72□□□□□ -1.81
SCN1A-220ENST00000641603 C19orf71A6NCJ1 209 aa3.72□□□□□ -1.81
SCN1A-220ENST00000641603 PSPNO60542 156 aa3.72□□□□□ -1.81
SCN1A-220ENST00000641603 CLUHP3Q96NS8 147 aa3.72□□□□□ -1.81
SCN1A-220ENST00000641603 UBR3Q6ZT12 1888 aa3.72□□□□□ -1.81
SCN1A-220ENST00000641603 LGALS9O00182 355 aa3.72□□□□□ -1.81
SCN1A-220ENST00000641603 IGHV1-3A0A0C4DH29 117 aa3.72□□□□□ -1.81
SCN1A-220ENST00000641603 C16orf54Q6UWD8 224 aa3.72□□□□□ -1.81
SCN1A-220ENST00000641603 GGNQ86UU5 652 aa3.72□□□□□ -1.81
SCN1A-220ENST00000641603 U3KQK5 164 aa3.72□□□□□ -1.81
SCN1A-220ENST00000641603 P0C879 139 aa3.72□□□□□ -1.81
SCN1A-220ENST00000641603 RPL18AQ02543 176 aaKnown RBP3.72□□□□□ -1.81
SCN1A-220ENST00000641603 A4D1N5 150 aa3.72□□□□□ -1.81
SCN1A-220ENST00000641603 TRGV3P03979 118 aa3.72□□□□□ -1.81
SCN1A-220ENST00000641603 BCE1O60756 84 aa3.71□□□□□ -1.81
SCN1A-220ENST00000641603 MLST8Q9BVC4 326 aa3.71□□□□□ -1.81
SCN1A-220ENST00000641603 PRO0628Q9UI54 55 aa3.71□□□□□ -1.81
SCN1A-220ENST00000641603 ABCA1O95477 2261 aa3.71□□□□□ -1.81
SCN1A-220ENST00000641603 SPTA1P02549 2419 aa3.71□□□□□ -1.81
SCN1A-220ENST00000641603 ZGRF1Q86YA3 2104 aa3.71□□□□□ -1.81
SCN1A-220ENST00000641603 ZNF784Q8NCA9 323 aaPredicted RBP3.71□□□□□ -1.81
SCN1A-220ENST00000641603 TET1Q8NFU7 2136 aa3.71□□□□□ -1.81
SCN1A-220ENST00000641603 AKAP6Q13023 2319 aa3.71□□□□□ -1.82
SCN1A-220ENST00000641603 A0A0J9YX75 114 aa3.71□□□□□ -1.82
SCN1A-220ENST00000641603 CRLF1O75462 422 aa3.71□□□□□ -1.82
SCN1A-220ENST00000641603 IGHV1-8P0DP01 117 aa3.71□□□□□ -1.82
SCN1A-220ENST00000641603 GP9P14770 177 aa3.71□□□□□ -1.82
SCN1A-220ENST00000641603 SS18Q15532 418 aa3.71□□□□□ -1.82
SCN1A-220ENST00000641603 FAM120AOSQ5T036 256 aa3.71□□□□□ -1.82
SCN1A-220ENST00000641603 FGFBP3Q8TAT2 258 aa3.71□□□□□ -1.82
SCN1A-220ENST00000641603 SCN10AQ9Y5Y9 1956 aa3.71□□□□□ -1.82
SCN1A-220ENST00000641603 MYOFQ9NZM1 2061 aa3.71□□□□□ -1.82
SCN1A-220ENST00000641603 CGB1A6NKQ9 187 aa3.71□□□□□ -1.82
SCN1A-220ENST00000641603 KRTAP27-1Q3LI81 207 aa3.71□□□□□ -1.82
SCN1A-220ENST00000641603 FAM216BQ8N7L0 139 aa3.71□□□□□ -1.82
SCN1A-220ENST00000641603 ADAMTSL1Q8N6G6 1762 aa3.71□□□□□ -1.82
SCN1A-220ENST00000641603 IGHV3-72A0A0B4J1Y9 119 aa3.71□□□□□ -1.82
SCN1A-220ENST00000641603 FAM222AQ5U5X8 452 aa3.71□□□□□ -1.82
SCN1A-220ENST00000641603 SLC25A29Q8N8R3 303 aa3.71□□□□□ -1.82
SCN1A-220ENST00000641603 TOMM7Q9P0U1 55 aa3.71□□□□□ -1.82
SCN1A-220ENST00000641603 CEP250Q9BV73 2442 aa3.71□□□□□ -1.82
SCN1A-220ENST00000641603 FAM110DQ8TAY7 271 aaPredicted RBP3.71□□□□□ -1.82
SCN1A-220ENST00000641603 SPTBN2O15020 2390 aa3.71□□□□□ -1.82
SCN1A-220ENST00000641603 TNRC6AQ8NDV7 1962 aaKnown RBP3.71□□□□□ -1.82
SCN1A-220ENST00000641603 TRAV25A0A0B4J276 109 aa3.71□□□□□ -1.82
SCN1A-220ENST00000641603 MORN5Q5VZ52 161 aa3.71□□□□□ -1.82
SCN1A-220ENST00000641603 CD177Q8N6Q3 437 aa3.71□□□□□ -1.82
SCN1A-220ENST00000641603 LEAP2Q969E1 77 aa3.71□□□□□ -1.82
SCN1A-220ENST00000641603 PLXNA4Q9HCM2 1894 aa3.71□□□□□ -1.82
SCN1A-220ENST00000641603 SRRM4A7MD48 611 aaKnown RBP3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms