RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

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Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 NPC2P61916 151 aa16.29■□□□□ 0.2
UPF1-207ENST00000599848 HIST1H4AP62805 103 aaKnown RBP16.29■□□□□ 0.2
UPF1-207ENST00000599848 CACNA1DQ01668 2161 aa16.29■□□□□ 0.2
UPF1-207ENST00000599848 BCL6BQ8N143 479 aaPredicted RBP16.29■□□□□ 0.2
UPF1-207ENST00000599848 IGHV3-16A0A0C4DH30 117 aa16.29■□□□□ 0.2
UPF1-207ENST00000599848 BTCP35070 178 aa16.29■□□□□ 0.2
UPF1-207ENST00000599848 SAMD5Q5TGI4 173 aa16.29■□□□□ 0.2
UPF1-207ENST00000599848 HLA-DRB4P13762 266 aa16.28■□□□□ 0.2
UPF1-207ENST00000599848 HLA-DRB4X5D2U9 266 aa16.28■□□□□ 0.2
UPF1-207ENST00000599848 SIPA1L1O43166 1804 aa16.28■□□□□ 0.2
UPF1-207ENST00000599848 ESDP10768 282 aa16.27■□□□□ 0.2
UPF1-207ENST00000599848 C2orf66Q6UXQ4 117 aa16.27■□□□□ 0.2
UPF1-207ENST00000599848 TRAV8-1A0A0A6YYK1 113 aa16.27■□□□□ 0.2
UPF1-207ENST00000599848 ANXA2RQ3ZCQ2 193 aa16.27■□□□□ 0.19
UPF1-207ENST00000599848 AMN1Q8IY45 258 aa16.27■□□□□ 0.19
UPF1-207ENST00000599848 PROK2Q9HC23 129 aa16.27■□□□□ 0.19
UPF1-207ENST00000599848 PDCD11Q14690 1871 aaKnown RBP16.27■□□□□ 0.19
UPF1-207ENST00000599848 A0A1B0GV90 55 aa16.26■□□□□ 0.19
UPF1-207ENST00000599848 WIPF2Q8TF74 440 aaPredicted RBP16.26■□□□□ 0.19
UPF1-207ENST00000599848 A0A087WV48 116 aa16.26■□□□□ 0.19
UPF1-207ENST00000599848 IGHV4-61A0A0C4DH41 118 aa16.26■□□□□ 0.19
UPF1-207ENST00000599848 CENPVL3A0A0U1RRI6 287 aa16.26■□□□□ 0.19
UPF1-207ENST00000599848 SPANXDQ9BXN6 97 aa16.26■□□□□ 0.19
UPF1-207ENST00000599848 POLEQ07864 2286 aa16.25■□□□□ 0.19
UPF1-207ENST00000599848 TRAV13-2A0A0B4J235 113 aa16.25■□□□□ 0.19
UPF1-207ENST00000599848 K7EM74 188 aa16.25■□□□□ 0.19
UPF1-207ENST00000599848 C4orf48Q5BLP8 95 aa16.25■□□□□ 0.19
UPF1-207ENST00000599848 ZC2HC1BQ5TFG8 222 aa16.25■□□□□ 0.19
UPF1-207ENST00000599848 POU2AF1Q16633 256 aa16.25■□□□□ 0.19
UPF1-207ENST00000599848 SUMO4Q6EEV6 95 aa16.25■□□□□ 0.19
UPF1-207ENST00000599848 PRR25Q96S07 402 aa16.25■□□□□ 0.19
UPF1-207ENST00000599848 ZNF503Q96F45 646 aa16.24■□□□□ 0.19
UPF1-207ENST00000599848 IGHV4-30-2A0A087WSY4 118 aa16.24■□□□□ 0.19
UPF1-207ENST00000599848 PFN2P35080 140 aa16.24■□□□□ 0.19
UPF1-207ENST00000599848 C20orf78Q9BR46 151 aa16.24■□□□□ 0.19
UPF1-207ENST00000599848 FAM104BQ5XKR9 115 aa16.24■□□□□ 0.19
UPF1-207ENST00000599848 RBAKDNA6NC62 111 aa16.23■□□□□ 0.19
UPF1-207ENST00000599848 K7EMI3 77 aa16.23■□□□□ 0.19
UPF1-207ENST00000599848 KIF26BQ2KJY2 2108 aa16.23■□□□□ 0.19
UPF1-207ENST00000599848 ARHGEF17Q96PE2 2063 aaPredicted RBP16.22■□□□□ 0.19
UPF1-207ENST00000599848 C21orf62-AS1Q17RA5 79 aa16.22■□□□□ 0.19
UPF1-207ENST00000599848 C14orf177Q52M58 125 aa16.22■□□□□ 0.19
UPF1-207ENST00000599848 STPG4Q8N801 248 aa16.22■□□□□ 0.19
UPF1-207ENST00000599848 SCRT2Q9NQ03 307 aa16.22■□□□□ 0.19
UPF1-207ENST00000599848 NOP10Q9NPE3 64 aaKnown RBP16.21■□□□□ 0.19
UPF1-207ENST00000599848 PRB1P04280 392 aa16.21■□□□□ 0.19
UPF1-207ENST00000599848 UBL5Q9BZL1 73 aa16.21■□□□□ 0.19
UPF1-207ENST00000599848 C8orf49Q96NF6 230 aa16.21■□□□□ 0.19
UPF1-207ENST00000599848 ABCA1O95477 2261 aa16.21■□□□□ 0.18
UPF1-207ENST00000599848 TIRAPP58753 221 aa16.21■□□□□ 0.18
UPF1-207ENST00000599848 GUSBP1Q15486 140 aa16.21■□□□□ 0.18
UPF1-207ENST00000599848 TRAV8-3A0A0A6YYJ7 113 aa16.2■□□□□ 0.18
UPF1-207ENST00000599848 TRAV12-2A0A075B6T6 113 aa16.2■□□□□ 0.18
UPF1-207ENST00000599848 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP16.19■□□□□ 0.18
UPF1-207ENST00000599848 ALPK2Q86TB3 2170 aa16.19■□□□□ 0.18
UPF1-207ENST00000599848 GREB1Q4ZG55 1949 aa16.19■□□□□ 0.18
UPF1-207ENST00000599848 C15orf65H3BRN8 121 aa16.19■□□□□ 0.18
UPF1-207ENST00000599848 SYS1-DBNDD2H3BUS1 97 aa16.19■□□□□ 0.18
UPF1-207ENST00000599848 GAGE2BQ13066 116 aa16.19■□□□□ 0.18
UPF1-207ENST00000599848 NDUFAF3Q9BU61 184 aa16.19■□□□□ 0.18
UPF1-207ENST00000599848 U3KQE9 123 aa16.19■□□□□ 0.18
UPF1-207ENST00000599848 ETDCA0A1B0GVM5 59 aa16.19■□□□□ 0.18
UPF1-207ENST00000599848 FBXL19-AS1Q494R0 122 aa16.18■□□□□ 0.18
UPF1-207ENST00000599848 DSCR8Q96T75 97 aa16.18■□□□□ 0.18
UPF1-207ENST00000599848 HEATR1Q9H583 2144 aaKnown RBP16.18■□□□□ 0.18
UPF1-207ENST00000599848 FNDC4Q9H6D8 234 aaPredicted RBP16.18■□□□□ 0.18
UPF1-207ENST00000599848 H3BQ85 93 aa16.18■□□□□ 0.18
UPF1-207ENST00000599848 IGLC1P0CG04 106 aa16.18■□□□□ 0.18
UPF1-207ENST00000599848 LYL1P12980 280 aa16.18■□□□□ 0.18
UPF1-207ENST00000599848 MLANAQ16655 118 aa16.18■□□□□ 0.18
UPF1-207ENST00000599848 FAM231DQ6ZW35 169 aa16.18■□□□□ 0.18
UPF1-207ENST00000599848 KLHDC3Q9BQ90 382 aa16.18■□□□□ 0.18
UPF1-207ENST00000599848 MRPL36Q9P0J6 103 aaKnown RBP16.18■□□□□ 0.18
UPF1-207ENST00000599848 Q9HAA7 133 aa16.18■□□□□ 0.18
UPF1-207ENST00000599848 F8W735 103 aaPredicted RBP16.17■□□□□ 0.18
UPF1-207ENST00000599848 LOXL1Q08397 574 aaPredicted RBP16.17■□□□□ 0.18
UPF1-207ENST00000599848 NPBQ8NG41 125 aa16.17■□□□□ 0.18
UPF1-207ENST00000599848 A0A0J9YY99 117 aa16.17■□□□□ 0.18
UPF1-207ENST00000599848 CD5LO43866 347 aa16.17■□□□□ 0.18
UPF1-207ENST00000599848 HIST1H2BKO60814 126 aa16.17■□□□□ 0.18
UPF1-207ENST00000599848 HIST1H2BJP06899 126 aa16.17■□□□□ 0.18
UPF1-207ENST00000599848 HIST1H2BOP23527 126 aa16.17■□□□□ 0.18
UPF1-207ENST00000599848 HIST1H2BBP33778 126 aa16.17■□□□□ 0.18
UPF1-207ENST00000599848 HIST1H2BDP58876 126 aa16.17■□□□□ 0.18
UPF1-207ENST00000599848 HIST1H2BCP62807 126 aa16.17■□□□□ 0.18
UPF1-207ENST00000599848 HIST2H2BEQ16778 126 aa16.17■□□□□ 0.18
UPF1-207ENST00000599848 HIST2H2BFQ5QNW6 126 aaPredicted RBP16.17■□□□□ 0.18
UPF1-207ENST00000599848 C15orf53Q8NAA6 179 aa16.17■□□□□ 0.18
UPF1-207ENST00000599848 ATP6V0E2Q8NHE4 81 aa16.17■□□□□ 0.18
UPF1-207ENST00000599848 HIST1H2BHQ93079 126 aa16.17■□□□□ 0.18
UPF1-207ENST00000599848 VOPP1Q96AW1 172 aa16.17■□□□□ 0.18
UPF1-207ENST00000599848 HIST1H2BNQ99877 126 aa16.17■□□□□ 0.18
UPF1-207ENST00000599848 HIST1H2BMQ99879 126 aa16.17■□□□□ 0.18
UPF1-207ENST00000599848 NDUFA12Q9UI09 145 aa16.17■□□□□ 0.18
UPF1-207ENST00000599848 IGKV1-39P01597 117 aa16.16■□□□□ 0.18
UPF1-207ENST00000599848 IGKV1D-39P04432 117 aa16.16■□□□□ 0.18
UPF1-207ENST00000599848 NXPH4O95158 308 aa16.16■□□□□ 0.18
UPF1-207ENST00000599848 HERV-K104P63124 156 aa16.16■□□□□ 0.18
UPF1-207ENST00000599848 CYTL1Q9NRR1 136 aa16.16■□□□□ 0.18
UPF1-207ENST00000599848 UBE2CO00762 179 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms