RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 MRPL53Q96EL3 112 aaKnown RBP6.74□□□□□ -1.33
TRIM28-210ENST00000597618 FAM19A4Q96LR4 140 aa6.74□□□□□ -1.33
TRIM28-210ENST00000597618 Q9HAA7 133 aa6.74□□□□□ -1.33
TRIM28-210ENST00000597618 PSENENQ9NZ42 101 aa6.74□□□□□ -1.33
TRIM28-210ENST00000597618 MGAT4CQ9UBM8 478 aa6.74□□□□□ -1.33
TRIM28-210ENST00000597618 BOLA1Q9Y3E2 137 aa6.74□□□□□ -1.33
TRIM28-210ENST00000597618 IGHV1OR15-1A0A075B7D0 117 aa6.73□□□□□ -1.33
TRIM28-210ENST00000597618 ZNF253O75346 499 aa6.73□□□□□ -1.33
TRIM28-210ENST00000597618 GPX1P07203 203 aa6.73□□□□□ -1.33
TRIM28-210ENST00000597618 NMBP08949 121 aa6.73□□□□□ -1.33
TRIM28-210ENST00000597618 CRISP2P16562 243 aa6.73□□□□□ -1.33
TRIM28-210ENST00000597618 TIRAPP58753 221 aa6.73□□□□□ -1.33
TRIM28-210ENST00000597618 KRTAP10-4P60372 401 aaPredicted RBP6.73□□□□□ -1.33
TRIM28-210ENST00000597618 POLR2GP62487 172 aaKnown RBP eCLIP6.73□□□□□ -1.33
TRIM28-210ENST00000597618 ERCC8Q13216 396 aa6.73□□□□□ -1.33
TRIM28-210ENST00000597618 CTF1Q16619 201 aa6.73□□□□□ -1.33
TRIM28-210ENST00000597618 MORN5Q5VZ52 161 aa6.73□□□□□ -1.33
TRIM28-210ENST00000597618 C10orf113Q5VZT2 155 aa6.73□□□□□ -1.33
TRIM28-210ENST00000597618 SCXQ7RTU7 201 aa6.73□□□□□ -1.33
TRIM28-210ENST00000597618 OR10G4Q8NGN3 311 aa6.73□□□□□ -1.33
TRIM28-210ENST00000597618 TMEM37Q8WXS4 190 aa6.73□□□□□ -1.33
TRIM28-210ENST00000597618 LINC00477Q96M19 166 aa6.73□□□□□ -1.33
TRIM28-210ENST00000597618 CCDC59Q9P031 241 aaKnown RBP6.73□□□□□ -1.33
TRIM28-210ENST00000597618 TP53TG3Q9ULZ0 132 aa6.73□□□□□ -1.33
TRIM28-210ENST00000597618 PKHD1L1Q86WI1 4243 aa6.73□□□□□ -1.33
TRIM28-210ENST00000597618 AGPAT2O15120 278 aa6.72□□□□□ -1.33
TRIM28-210ENST00000597618 SSSCA1O60232 199 aa6.72□□□□□ -1.33
TRIM28-210ENST00000597618 HOXB5P09067 269 aa6.72□□□□□ -1.33
TRIM28-210ENST00000597618 SFTA3P0C7M3 94 aa6.72□□□□□ -1.33
TRIM28-210ENST00000597618 PPT1P50897 306 aa6.72□□□□□ -1.33
TRIM28-210ENST00000597618 ID3Q02535 119 aa6.72□□□□□ -1.33
TRIM28-210ENST00000597618 TDRG1Q3Y452 100 aa6.72□□□□□ -1.33
TRIM28-210ENST00000597618 OR10P1Q8NGE3 313 aa6.72□□□□□ -1.33
TRIM28-210ENST00000597618 BLNKQ8WV28 456 aa6.72□□□□□ -1.33
TRIM28-210ENST00000597618 ZNF479Q96JC4 524 aa6.72□□□□□ -1.33
TRIM28-210ENST00000597618 TM2D2Q9BX73 214 aa6.72□□□□□ -1.33
TRIM28-210ENST00000597618 SLC25A31Q9H0C2 315 aa6.72□□□□□ -1.33
TRIM28-210ENST00000597618 TRAV8-6A0A0B4J262 113 aa6.71□□□□□ -1.34
TRIM28-210ENST00000597618 M0R3E3 92 aa6.71□□□□□ -1.34
TRIM28-210ENST00000597618 CTDSP2O14595 271 aa6.71□□□□□ -1.34
TRIM28-210ENST00000597618 RS1O15537 224 aa6.71□□□□□ -1.34
TRIM28-210ENST00000597618 CCNKO75909 580 aa6.71□□□□□ -1.34
TRIM28-210ENST00000597618 SFT2D2O95562 160 aa6.71□□□□□ -1.34
TRIM28-210ENST00000597618 METTL15P1P0C7V9 234 aa6.71□□□□□ -1.34
TRIM28-210ENST00000597618 FAUP35544 74 aaKnown RBP6.71□□□□□ -1.34
TRIM28-210ENST00000597618 ASAH1Q13510 395 aa6.71□□□□□ -1.34
TRIM28-210ENST00000597618 LAGE3Q14657 143 aa6.71□□□□□ -1.34
TRIM28-210ENST00000597618 TMEM14EPQ6UXP3 125 aa6.71□□□□□ -1.34
TRIM28-210ENST00000597618 NHLRC2Q8NBF2 726 aa6.71□□□□□ -1.34
TRIM28-210ENST00000597618 DIRAS2Q96HU8 199 aa6.71□□□□□ -1.34
TRIM28-210ENST00000597618 SMIM8Q96KF7 97 aa6.71□□□□□ -1.34
TRIM28-210ENST00000597618 SRRQ9GZT4 340 aa6.71□□□□□ -1.34
TRIM28-210ENST00000597618 AGPAT4-IT1Q9H0P7 198 aa6.71□□□□□ -1.34
TRIM28-210ENST00000597618 PRELID1Q9Y255 219 aa6.71□□□□□ -1.34
TRIM28-210ENST00000597618 TRBV19A0A075B6N1 114 aa6.7□□□□□ -1.34
TRIM28-210ENST00000597618 TNFSF8P32971 234 aa6.7□□□□□ -1.34
TRIM28-210ENST00000597618 PPP1R1AQ13522 171 aa6.7□□□□□ -1.34
TRIM28-210ENST00000597618 WFDC2Q14508 124 aa6.7□□□□□ -1.34
TRIM28-210ENST00000597618 ZNF846Q147U1 533 aa6.7□□□□□ -1.34
TRIM28-210ENST00000597618 TMEM78Q5T7P6 136 aa6.7□□□□□ -1.34
TRIM28-210ENST00000597618 PRR9Q5T870 116 aa6.7□□□□□ -1.34
TRIM28-210ENST00000597618 Q6ZRG5 221 aa6.7□□□□□ -1.34
TRIM28-210ENST00000597618 C9orf47Q6ZRZ4 202 aa6.7□□□□□ -1.34
TRIM28-210ENST00000597618 ZFAND2AQ8N6M9 145 aa6.7□□□□□ -1.34
TRIM28-210ENST00000597618 RASL10AQ92737 203 aa6.7□□□□□ -1.34
TRIM28-210ENST00000597618 CHAC1Q9BUX1 264 aa6.7□□□□□ -1.34
TRIM28-210ENST00000597618 GGACTQ9BVM4 153 aa6.7□□□□□ -1.34
TRIM28-210ENST00000597618 NAA50Q9GZZ1 169 aaKnown RBP6.7□□□□□ -1.34
TRIM28-210ENST00000597618 DNAJC4Q9NNZ3 241 aa6.7□□□□□ -1.34
TRIM28-210ENST00000597618 RSL24D1Q9UHA3 163 aaKnown RBP6.7□□□□□ -1.34
TRIM28-210ENST00000597618 TRAV4A0A0B4J268 109 aa6.69□□□□□ -1.34
TRIM28-210ENST00000597618 HIST1H1EP10412 219 aaKnown RBP6.69□□□□□ -1.34
TRIM28-210ENST00000597618 PDE6HQ13956 83 aa6.69□□□□□ -1.34
TRIM28-210ENST00000597618 ACOT6Q3I5F7 207 aaPredicted RBP6.69□□□□□ -1.34
TRIM28-210ENST00000597618 OR10J3Q5JRS4 329 aa6.69□□□□□ -1.34
TRIM28-210ENST00000597618 OR1L4Q8NGR5 311 aa6.69□□□□□ -1.34
TRIM28-210ENST00000597618 PFDN5Q99471 154 aa6.69□□□□□ -1.34
TRIM28-210ENST00000597618 MGST2Q99735 147 aa6.69□□□□□ -1.34
TRIM28-210ENST00000597618 SPXQ9BT56 116 aa6.69□□□□□ -1.34
TRIM28-210ENST00000597618 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.68□□□□□ -1.34
TRIM28-210ENST00000597618 LOC100131303A0A0U1RQF7 123 aa6.68□□□□□ -1.34
TRIM28-210ENST00000597618 TSC22D2O75157 780 aa6.68□□□□□ -1.34
TRIM28-210ENST00000597618 IGHV3-30P01768 117 aa6.68□□□□□ -1.34
TRIM28-210ENST00000597618 IGHV3-33P01772 117 aa6.68□□□□□ -1.34
TRIM28-210ENST00000597618 IGHV3-30-3P0DP02 117 aa6.68□□□□□ -1.34
TRIM28-210ENST00000597618 IGHV3-30-5P0DP03 117 aa6.68□□□□□ -1.34
TRIM28-210ENST00000597618 TAS2R30P59541 319 aa6.68□□□□□ -1.34
TRIM28-210ENST00000597618 RAB31Q13636 194 aa6.68□□□□□ -1.34
TRIM28-210ENST00000597618 Q6ZQT7 251 aa6.68□□□□□ -1.34
TRIM28-210ENST00000597618 C12orf45Q8N5I9 185 aaPredicted RBP6.68□□□□□ -1.34
TRIM28-210ENST00000597618 CIRBP-AS1Q8TBR5 109 aa6.68□□□□□ -1.34
TRIM28-210ENST00000597618 RAB2BQ8WUD1 216 aa6.68□□□□□ -1.34
TRIM28-210ENST00000597618 SLC25A21Q9BQT8 299 aaPredicted RBP6.68□□□□□ -1.34
TRIM28-210ENST00000597618 AAMDCQ9H7C9 122 aa6.68□□□□□ -1.34
TRIM28-210ENST00000597618 TIMM9Q9Y5J7 89 aa6.68□□□□□ -1.34
TRIM28-210ENST00000597618 IGKV2-40A0A087WW87 121 aaPredicted RBP6.67□□□□□ -1.34
TRIM28-210ENST00000597618 TRBV7-9A0A0J9YWB2 115 aa6.67□□□□□ -1.34
TRIM28-210ENST00000597618 FABP12A6NFH5 140 aa6.67□□□□□ -1.34
TRIM28-210ENST00000597618 LECT2O14960 151 aa6.67□□□□□ -1.34
TRIM28-210ENST00000597618 NDUFB4O95168 129 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms