RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 ISOC2Q96AB3 205 aa7.84□□□□□ -1.15
VPS4B-204ENST00000589604 SGK494Q96LW2 274 aa7.84□□□□□ -1.15
VPS4B-204ENST00000589604 MLST8Q9BVC4 326 aa7.84□□□□□ -1.15
VPS4B-204ENST00000589604 AAMDCQ9H7C9 122 aa7.84□□□□□ -1.15
VPS4B-204ENST00000589604 NRN1Q9NPD7 142 aa7.84□□□□□ -1.15
VPS4B-204ENST00000589604 A0A087WWC5 75 aa7.83□□□□□ -1.16
VPS4B-204ENST00000589604 B4DEV8 164 aa7.83□□□□□ -1.16
VPS4B-204ENST00000589604 ADIRFQ15847 76 aa7.83□□□□□ -1.16
VPS4B-204ENST00000589604 PSG3Q16557 428 aa7.83□□□□□ -1.16
VPS4B-204ENST00000589604 CMTM2Q8TAZ6 248 aa7.83□□□□□ -1.16
VPS4B-204ENST00000589604 MRPL53Q96EL3 112 aaKnown RBP7.83□□□□□ -1.16
VPS4B-204ENST00000589604 PRELID1Q9Y255 219 aa7.83□□□□□ -1.16
VPS4B-204ENST00000589604 IGKV2-40A0A087WW87 121 aaPredicted RBP7.83□□□□□ -1.16
VPS4B-204ENST00000589604 UBE2CO00762 179 aa7.83□□□□□ -1.16
VPS4B-204ENST00000589604 TSPAN4O14817 238 aa7.83□□□□□ -1.16
VPS4B-204ENST00000589604 LTAP01374 205 aa7.83□□□□□ -1.16
VPS4B-204ENST00000589604 IGKV2D-40P01614 121 aaPredicted RBP7.83□□□□□ -1.16
VPS4B-204ENST00000589604 S100A9P06702 114 aaKnown RBP7.83□□□□□ -1.16
VPS4B-204ENST00000589604 GNG4P50150 75 aa7.83□□□□□ -1.16
VPS4B-204ENST00000589604 BTN1A1Q13410 526 aa7.83□□□□□ -1.16
VPS4B-204ENST00000589604 RNF212Q495C1 297 aa7.83□□□□□ -1.16
VPS4B-204ENST00000589604 CBLN2Q8IUK8 224 aa7.83□□□□□ -1.16
VPS4B-204ENST00000589604 TMEM75Q8N9X5 138 aa7.83□□□□□ -1.16
VPS4B-204ENST00000589604 FMC1Q96HJ9 113 aa7.83□□□□□ -1.16
VPS4B-204ENST00000589604 RPS10P5Q9NQ39 176 aa7.83□□□□□ -1.16
VPS4B-204ENST00000589604 PEMTQ9UBM1 199 aa7.83□□□□□ -1.16
VPS4B-204ENST00000589604 AGRNO00468 2067 aa7.82□□□□□ -1.16
VPS4B-204ENST00000589604 K7EQG2 157 aa7.82□□□□□ -1.16
VPS4B-204ENST00000589604 GCGP01275 180 aa7.82□□□□□ -1.16
VPS4B-204ENST00000589604 BMI1P35226 326 aa7.82□□□□□ -1.16
VPS4B-204ENST00000589604 OR5I1Q13606 314 aa7.82□□□□□ -1.16
VPS4B-204ENST00000589604 TMEM88Q6PEY1 159 aa7.82□□□□□ -1.16
VPS4B-204ENST00000589604 Q86TA4 180 aa7.82□□□□□ -1.16
VPS4B-204ENST00000589604 BAGE2Q86Y30 109 aa7.82□□□□□ -1.16
VPS4B-204ENST00000589604 GBGT1Q8N5D6 347 aa7.82□□□□□ -1.16
VPS4B-204ENST00000589604 VGLL1Q99990 258 aa7.82□□□□□ -1.16
VPS4B-204ENST00000589604 MS4A6AQ9H2W1 248 aa7.82□□□□□ -1.16
VPS4B-204ENST00000589604 IGKV3-7A0A075B6H7 116 aa7.81□□□□□ -1.16
VPS4B-204ENST00000589604 CSN1S1P47710 185 aa7.81□□□□□ -1.16
VPS4B-204ENST00000589604 SMCPP49901 116 aaPredicted RBP7.81□□□□□ -1.16
VPS4B-204ENST00000589604 KRTAP10-11P60412 298 aa7.81□□□□□ -1.16
VPS4B-204ENST00000589604 FLI1Q01543 452 aaPredicted RBP7.81□□□□□ -1.16
VPS4B-204ENST00000589604 DEFB114Q30KQ6 69 aa7.81□□□□□ -1.16
VPS4B-204ENST00000589604 FAM24BQ8N5W8 94 aa7.81□□□□□ -1.16
VPS4B-204ENST00000589604 NHLRC2Q8NBF2 726 aa7.81□□□□□ -1.16
VPS4B-204ENST00000589604 YPEL4Q96NS1 127 aa7.81□□□□□ -1.16
VPS4B-204ENST00000589604 ASCL2Q99929 193 aa7.81□□□□□ -1.16
VPS4B-204ENST00000589604 CLEC5AQ9NY25 188 aa7.81□□□□□ -1.16
VPS4B-204ENST00000589604 SIGLEC8Q9NYZ4 499 aa7.81□□□□□ -1.16
VPS4B-204ENST00000589604 PSG8Q9UQ74 426 aa7.81□□□□□ -1.16
VPS4B-204ENST00000589604 SERTM2A0A1B0GWG4 89 aa7.8□□□□□ -1.16
VPS4B-204ENST00000589604 RBAKDNA6NC62 111 aa7.8□□□□□ -1.16
VPS4B-204ENST00000589604 DEFB1P60022 68 aa7.8□□□□□ -1.16
VPS4B-204ENST00000589604 UBE2G1P62253 170 aa7.8□□□□□ -1.16
VPS4B-204ENST00000589604 ERCC8Q13216 396 aa7.8□□□□□ -1.16
VPS4B-204ENST00000589604 LINC00322Q6ZN03 302 aaPredicted RBP7.8□□□□□ -1.16
VPS4B-204ENST00000589604 TMEM242Q9NWH2 141 aa7.8□□□□□ -1.16
VPS4B-204ENST00000589604 WIPF1O43516 503 aa7.79□□□□□ -1.16
VPS4B-204ENST00000589604 SAP30O75446 220 aa7.79□□□□□ -1.16
VPS4B-204ENST00000589604 BEAN1Q3B7T3 259 aa7.79□□□□□ -1.16
VPS4B-204ENST00000589604 COX8CQ7Z4L0 72 aa7.79□□□□□ -1.16
VPS4B-204ENST00000589604 PRNTQ86SH4 94 aa7.79□□□□□ -1.16
VPS4B-204ENST00000589604 WFDC3Q8IUB2 231 aa7.79□□□□□ -1.16
VPS4B-204ENST00000589604 TMEM183AQ8IXX5 376 aa7.79□□□□□ -1.16
VPS4B-204ENST00000589604 SMIM12Q96EX1 92 aa7.79□□□□□ -1.16
VPS4B-204ENST00000589604 SFRP2Q96HF1 295 aa7.79□□□□□ -1.16
VPS4B-204ENST00000589604 AGPAT4-IT1Q9H0P7 198 aa7.79□□□□□ -1.16
VPS4B-204ENST00000589604 TUBA4BQ9H853 241 aa7.79□□□□□ -1.16
VPS4B-204ENST00000589604 IZUMO1RA6ND01 250 aa7.79□□□□□ -1.16
VPS4B-204ENST00000589604 K7EQM0 130 aa7.79□□□□□ -1.16
VPS4B-204ENST00000589604 PRB2P02812 416 aaPredicted RBP7.79□□□□□ -1.16
VPS4B-204ENST00000589604 MT-ND4LP03901 98 aa7.79□□□□□ -1.16
VPS4B-204ENST00000589604 C9orf47Q6ZRZ4 202 aa7.79□□□□□ -1.16
VPS4B-204ENST00000589604 TMEM61Q8N0U2 210 aa7.79□□□□□ -1.16
VPS4B-204ENST00000589604 GPR61Q9BZJ8 451 aa7.79□□□□□ -1.16
VPS4B-204ENST00000589604 CTDSP1Q9GZU7 261 aa7.79□□□□□ -1.16
VPS4B-204ENST00000589604 SMCO4Q9NRQ5 59 aa7.79□□□□□ -1.16
VPS4B-204ENST00000589604 PPP1R14DQ9NXH3 145 aa7.79□□□□□ -1.16
VPS4B-204ENST00000589604 ZFP30Q9Y2G7 519 aa7.79□□□□□ -1.16
VPS4B-204ENST00000589604 C19orf71A6NCJ1 209 aa7.78□□□□□ -1.16
VPS4B-204ENST00000589604 COLCA2A8K830 154 aa7.78□□□□□ -1.16
VPS4B-204ENST00000589604 IGLV1-51P01701 117 aa7.78□□□□□ -1.16
VPS4B-204ENST00000589604 PFN1P07737 140 aaKnown RBP7.78□□□□□ -1.16
VPS4B-204ENST00000589604 ZNF705DP0CH99 300 aaPredicted RBP7.78□□□□□ -1.16
VPS4B-204ENST00000589604 ZNF705BP0CI00 300 aaPredicted RBP7.78□□□□□ -1.16
VPS4B-204ENST00000589604 MGST1P10620 155 aaKnown RBP7.78□□□□□ -1.16
VPS4B-204ENST00000589604 TFPI2P48307 235 aa7.78□□□□□ -1.16
VPS4B-204ENST00000589604 CRIP1P50238 77 aa7.78□□□□□ -1.16
VPS4B-204ENST00000589604 CD300EQ496F6 205 aaPredicted RBP7.78□□□□□ -1.16
VPS4B-204ENST00000589604 KPRPQ5T749 579 aaPredicted RBP7.78□□□□□ -1.16
VPS4B-204ENST00000589604 C9orf66Q5T8R8 295 aa7.78□□□□□ -1.16
VPS4B-204ENST00000589604 ZNF738Q8NE65 137 aa7.78□□□□□ -1.16
VPS4B-204ENST00000589604 Q8TAT8 98 aa7.78□□□□□ -1.16
VPS4B-204ENST00000589604 ZC2HC1AQ96GY0 325 aa7.78□□□□□ -1.16
VPS4B-204ENST00000589604 C8orf49Q96NF6 230 aa7.78□□□□□ -1.16
VPS4B-204ENST00000589604 PRR25Q96S07 402 aa7.78□□□□□ -1.16
VPS4B-204ENST00000589604 RNASE7Q9H1E1 156 aaKnown RBP7.78□□□□□ -1.16
VPS4B-204ENST00000589604 OSTCQ9NRP0 149 aa7.78□□□□□ -1.16
VPS4B-204ENST00000589604 V9GYV3 84 aa7.78□□□□□ -1.16
VPS4B-204ENST00000589604 TRAV2A0A0B4J234 112 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms