RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 LAMTOR3Q9UHA4 124 aa-0.35□□□□□ -2.47
SS18-214ENST00000580003 FRMPD1Q5SYB0 1578 aa-0.36□□□□□ -2.47
SS18-214ENST00000580003 ABCA12Q86UK0 2595 aa-0.36□□□□□ -2.47
SS18-214ENST00000580003 PIK3C2AO00443 1686 aa-0.36□□□□□ -2.47
SS18-214ENST00000580003 MT-ND6P03923 174 aa-0.36□□□□□ -2.47
SS18-214ENST00000580003 IFNA6P05013 189 aa-0.36□□□□□ -2.47
SS18-214ENST00000580003 ASB16-AS1Q495Z4 193 aa-0.36□□□□□ -2.47
SS18-214ENST00000580003 VMO1Q7Z5L0 202 aa-0.36□□□□□ -2.47
SS18-214ENST00000580003 OR4B1Q8NGF8 309 aa-0.36□□□□□ -2.47
SS18-214ENST00000580003 MRPL35Q9NZE8 188 aaKnown RBP-0.36□□□□□ -2.47
SS18-214ENST00000580003 CD109Q6YHK3 1445 aa-0.37□□□□□ -2.47
SS18-214ENST00000580003 BBIP1A8MTZ0 92 aa-0.37□□□□□ -2.47
SS18-214ENST00000580003 TRACP01848 142 aa-0.37□□□□□ -2.47
SS18-214ENST00000580003 FABP4P15090 132 aa-0.37□□□□□ -2.47
SS18-214ENST00000580003 KRTAP6-1Q3LI64 71 aa-0.37□□□□□ -2.47
SS18-214ENST00000580003 IZUMO2Q6UXV1 221 aa-0.37□□□□□ -2.47
SS18-214ENST00000580003 DSPPQ9NZW4 1301 aa-0.38□□□□□ -2.47
SS18-214ENST00000580003 H3BQV1 296 aa-0.38□□□□□ -2.47
SS18-214ENST00000580003 SNCBQ16143 134 aa-0.38□□□□□ -2.47
SS18-214ENST00000580003 RTL8BQ17RB0 113 aa-0.38□□□□□ -2.47
SS18-214ENST00000580003 C3orf62Q6ZUJ4 267 aa-0.38□□□□□ -2.47
SS18-214ENST00000580003 DEFB132Q7Z7B7 95 aa-0.38□□□□□ -2.47
SS18-214ENST00000580003 ISOC1Q96CN7 298 aa-0.38□□□□□ -2.47
SS18-214ENST00000580003 CEP19Q96LK0 163 aa-0.38□□□□□ -2.47
SS18-214ENST00000580003 CIB3Q96Q77 187 aaPredicted RBP-0.38□□□□□ -2.47
SS18-214ENST00000580003 CACNA1CQ13936 2221 aa-0.38□□□□□ -2.47
SS18-214ENST00000580003 HIVEP3Q5T1R4 2406 aa-0.39□□□□□ -2.47
SS18-214ENST00000580003 C5orf58C9J3I9 102 aa-0.39□□□□□ -2.47
SS18-214ENST00000580003 KPNA4O00629 521 aaPredicted RBP-0.39□□□□□ -2.47
SS18-214ENST00000580003 NDUFA6P56556 154 aa-0.39□□□□□ -2.47
SS18-214ENST00000580003 ZNF56Q15929 161 aa-0.39□□□□□ -2.47
SS18-214ENST00000580003 CCSMST1Q4G0I0 132 aa-0.39□□□□□ -2.47
SS18-214ENST00000580003 TCTEX1D1Q8N7M0 179 aa-0.39□□□□□ -2.47
SS18-214ENST00000580003 CCL4L1Q8NHW4 92 aa-0.39□□□□□ -2.47
SS18-214ENST00000580003 LINC00208Q96KT6 92 aa-0.39□□□□□ -2.47
SS18-214ENST00000580003 TTC28Q96AY4 2481 aa-0.39□□□□□ -2.47
SS18-214ENST00000580003 C3orf85A0A1B0GTC6 90 aa-0.4□□□□□ -2.47
SS18-214ENST00000580003 A0A1W2PPB8 328 aa-0.4□□□□□ -2.47
SS18-214ENST00000580003 A0A1W2PRS3 328 aa-0.4□□□□□ -2.47
SS18-214ENST00000580003 ARL5CA6NH57 179 aa-0.4□□□□□ -2.47
SS18-214ENST00000580003 HIGD1CA8MV81 97 aa-0.4□□□□□ -2.47
SS18-214ENST00000580003 KIR3DP1A8MWS1 328 aa-0.4□□□□□ -2.47
SS18-214ENST00000580003 TMEM229BQ8NBD8 167 aa-0.4□□□□□ -2.47
SS18-214ENST00000580003 OR13C6PQ8NH95 151 aa-0.4□□□□□ -2.47
SS18-214ENST00000580003 TMEM210A6NLX4 147 aa-0.41□□□□□ -2.48
SS18-214ENST00000580003 HSD11B1P28845 292 aa-0.41□□□□□ -2.48
SS18-214ENST00000580003 DNAJB13P59910 316 aa-0.41□□□□□ -2.48
SS18-214ENST00000580003 FXYD3Q14802 87 aa-0.41□□□□□ -2.48
SS18-214ENST00000580003 DHRS4L2Q6PKH6 230 aa-0.41□□□□□ -2.48
SS18-214ENST00000580003 DGCR14Q96DF8 476 aaKnown RBP-0.41□□□□□ -2.48
SS18-214ENST00000580003 NUP210LQ5VU65 1888 aa-0.41□□□□□ -2.48
SS18-214ENST00000580003 MUC2Q02817 5179 aa-0.42□□□□□ -2.48
SS18-214ENST00000580003 LOC107984156A0A0G2JMH3 177 aa-0.42□□□□□ -2.48
SS18-214ENST00000580003 IGF2P01344 180 aa-0.42□□□□□ -2.48
SS18-214ENST00000580003 IFNA1P01562 189 aa-0.42□□□□□ -2.48
SS18-214ENST00000580003 Q5XG85 94 aa-0.42□□□□□ -2.48
SS18-214ENST00000580003 ARL17AQ8IVW1 177 aa-0.42□□□□□ -2.48
SS18-214ENST00000580003 DIRC1Q969H9 104 aa-0.42□□□□□ -2.48
SS18-214ENST00000580003 C19orf12Q9NSK7 152 aa-0.42□□□□□ -2.48
SS18-214ENST00000580003 CAMSAP1Q5T5Y3 1602 aa-0.42□□□□□ -2.48
SS18-214ENST00000580003 MCRIP1C9JLW8 97 aa-0.43□□□□□ -2.48
SS18-214ENST00000580003 FXYD1O00168 92 aa-0.43□□□□□ -2.48
SS18-214ENST00000580003 CAPZBP47756 277 aa-0.43□□□□□ -2.48
SS18-214ENST00000580003 C5orf56Q8N8D9 126 aa-0.43□□□□□ -2.48
SS18-214ENST00000580003 GINS3Q9BRX5 216 aa-0.43□□□□□ -2.48
SS18-214ENST00000580003 U3KQA8 63 aa-0.43□□□□□ -2.48
SS18-214ENST00000580003 RBBP6Q7Z6E9 1792 aaKnown RBP-0.43□□□□□ -2.48
SS18-214ENST00000580003 PCLOQ9Y6V0 5065 aa-0.43□□□□□ -2.48
SS18-214ENST00000580003 SAA1P0DJI8 122 aaPredicted RBP-0.44□□□□□ -2.48
SS18-214ENST00000580003 TPT1P13693 172 aaKnown RBP-0.44□□□□□ -2.48
SS18-214ENST00000580003 MNS1Q8NEH6 495 aa-0.44□□□□□ -2.48
SS18-214ENST00000580003 FAM213BQ8TBF2 198 aa-0.44□□□□□ -2.48
SS18-214ENST00000580003 IL20Q9NYY1 176 aa-0.44□□□□□ -2.48
SS18-214ENST00000580003 N4BP2Q86UW6 1770 aaPredicted RBP-0.45□□□□□ -2.48
SS18-214ENST00000580003 CACNA1HO95180 2353 aa-0.45□□□□□ -2.48
SS18-214ENST00000580003 NBDYA0A0U1RRE5 68 aa-0.45□□□□□ -2.48
SS18-214ENST00000580003 ARF6P62330 175 aa-0.45□□□□□ -2.48
SS18-214ENST00000580003 KLKP1Q107X0 134 aa-0.45□□□□□ -2.48
SS18-214ENST00000580003 MRPL36Q9P0J6 103 aaKnown RBP-0.45□□□□□ -2.48
SS18-214ENST00000580003 TENM4Q6N022 2769 aa-0.45□□□□□ -2.48
SS18-214ENST00000580003 TRAPPC8Q9Y2L5 1435 aa-0.46□□□□□ -2.48
SS18-214ENST00000580003 UNC79Q9P2D8 2635 aa-0.46□□□□□ -2.48
SS18-214ENST00000580003 CTTNBP2Q8WZ74 1663 aa-0.46□□□□□ -2.48
SS18-214ENST00000580003 S100A6P06703 90 aa-0.46□□□□□ -2.48
SS18-214ENST00000580003 CSAG1Q6PB30 78 aa-0.46□□□□□ -2.48
SS18-214ENST00000580003 BORCS8Q96FH0 119 aa-0.46□□□□□ -2.48
SS18-214ENST00000580003 TMEM14BQ9NUH8 114 aa-0.46□□□□□ -2.48
SS18-214ENST00000580003 NUBP2Q9Y5Y2 271 aa-0.46□□□□□ -2.48
SS18-214ENST00000580003 KMT2CQ8NEZ4 4911 aaKnown RBP-0.46□□□□□ -2.48
SS18-214ENST00000580003 A0A096LNT2 108 aa-0.47□□□□□ -2.48
SS18-214ENST00000580003 POU6F1Q14863 301 aa-0.47□□□□□ -2.48
SS18-214ENST00000580003 OR8J3Q8NGG0 315 aa-0.47□□□□□ -2.48
SS18-214ENST00000580003 OR5H6Q8NGV6 325 aa-0.47□□□□□ -2.48
SS18-214ENST00000580003 AP3S1Q92572 193 aa-0.47□□□□□ -2.48
SS18-214ENST00000580003 CHMP6Q96FZ7 201 aa-0.47□□□□□ -2.48
SS18-214ENST00000580003 MPC1Q9Y5U8 109 aa-0.47□□□□□ -2.48
SS18-214ENST00000580003 LOC101927531A0A1B0GV80 90 aa-0.48□□□□□ -2.49
SS18-214ENST00000580003 TMEM30CPA0ZSE6 113 aa-0.48□□□□□ -2.49
SS18-214ENST00000580003 CSN2P05814 226 aa-0.48□□□□□ -2.49
SS18-214ENST00000580003 FABP2P12104 132 aa-0.48□□□□□ -2.49
Retrieved 100 of 20,778 RNA–protein pairs in 104.9 ms